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At least 1,549 records · Page 86

Numerical methods and computers used in elastohydrodynamic lubrication

Some of the methods of obtaining approximate numerical solutions to boundary value problems that arise in elastohydrodynamic lubrication are reviewed. The highlights of four general approaches (direct, inverse, quasi-inverse, and Newton-Raphson) are sketched. Advantages and disadvantages of these approaches are presented along with a flow chart showing some of the details of each. The basic question of numerical stability of the elastohydrodynamic lubrication solutions, especially in the pressure spike region, is considered. Computers used to solve this important class of lubrication problems are briefly described, with emphasis on supercomputers.

Hamrock, B. J.↗

Performance prediction of concurrent systems

Concurrent systems are computers that use multiple processors to solve a single problem. A means to predict the application performance on these systems is a useful tool in many areas of concurrent system research. A computationally efficient and accurate method to predict performance for a class of parallel computations on concurrent systems is described. A parallel computation is modeled as a task system with precedence relationships expressed as a series parallel directed acyclic graph. Resources in concurrent systems are modeled as service centers in queueing network models. Using these two models as inputs, the method outputs predictions of both the time to complete the computation and the concurrent system utilization. The algorithm used is based on the approximate Mean Value Analysis in queueing network modeling with extensions to model concurrency in the computation. The new algorithm was validated against both detailed simulation and actual execution on a commercial multiprocessor.

Mak, Victor W. K.↗

Machine learning and TDDFT software for stopping power computation

(SF-24-012) Stopping power describes the rate that a material slows radiation particles passing through it and is useful in designing many technologies. Few organizations can perform new measurements, which require significant resources and rare equipment, and all others rely on coarse approximations rendered from pre-existing data. Methods for computing stopping power in new materials, such as time-dependent density functional theory (TD-DFT), have only recently (circa-2015) become available but are too computationally costly to use frequently enough to have a pronounced impact. We have created a method that opens a pathway to computing stopping power without any need for experimental data by combining electronic structure computations and machine learning.

Ward, Logan↗

Advanced reliability methods for structural evaluation

Fast probability integration (FPI) methods, which can yield approximate solutions to such general structural reliability problems as the computation of the probabilities of complicated functions of random variables, are known to require one-tenth the computer time of Monte Carlo methods for a probability level of 0.001; lower probabilities yield even more dramatic differences. A strategy is presented in which a computer routine is run k times with selected perturbed values of the variables to obtain k solutions for a response variable Y. An approximating polynomial is fit to the k 'data' sets, and FPI methods are employed for this explicit form.

Wirsching, P. H.↗

A computer program for plotting stress-strain data from compression, tension, and torsion tests of materials

A computer program for plotting stress-strain curves obtained from compression and tension tests on rectangular (flat) specimens and circular-cross-section specimens (rods and tubes) and both stress-strain and torque-twist curves obtained from torsion tests on tubes is presented in detail. The program is written in FORTRAN 4 language for the Control Data 6000 series digital computer with the SCOPE 3.0 operating system and requires approximately 110000 octal locations of core storage. The program has the capability of plotting individual strain-gage outputs and/or the average output of several strain gages and the capability of computing the slope of a straight line which provides a least-squares fit to a specified section of the plotted curve. In addition, the program can compute the slope of the stress-strain curve at any point along the curve. The computer program input and output for three sample problems are presented.

Greenbaum, A.↗

The Geometric Spreading of Coronal Plumes and Coronal Holes

The geometric spreading in plumes and in the interplume region in coronal holes is calculated, using analytic and numerical theoretical models, between 1.0 and 5.0 solar radius. We apply two scale approximation that permits the rapid local spreading at the base of plumes to be evaluated separately from the global spreading imposed by coronal hole geometry. We show that fl can be computed from a potential field model and fg can be computed from global magnetohydrodynamic simulations of coronal structure. The approximations are valid when the plasma beta is small with respect to unity and for a plume separation small with respect to a solar radius.

Suess, S. T.↗

Detailed Mid- and Far- Ultraviolet Model Spectra for Accretion Disks in Cataclysmic Binaries

We present a large grid of computed far- and mid-ultraviolet spectra (850-2000 A) of the integrated light from steady-state accretion disks in luminous cataclysmic variables. The spectra are tabulated at 0.25 A intervals with an adopted FWHM resolution of 1.0 A, so they are suitable for use with observed spectra from a variety of modern space-borne observatories. Twenty-six different combinations of white dwarf mass M(sub wd) and mass accretion rate dot-m are considered, and spectra are presented for six different disk inclinations i. The disk models are computed self-consistently in the plane-parallel approximation, assuming LTE and vertical hydrostatic equilibrium, by solving simultaneously the radiative transfer, hydrostatic equilibrium, and energy balance equations. Irradiation from external sources is neglected. Local spectra of disk annuli are computed taking into account line transitions from elements 1-28 (H through Ni). Limb darkening as well as Doppler broadening and blending of lines are taken into account in computing the integrated disk spectra. The radiative properties of the models are discussed, including the dependence of ultraviolet fluxes and colors on M(sub wd), dot-m, and i. The appearance of the disk spectra is illustrated, with regard to changes in the same three parameters. Finally, possible future improvements to the present models and spectra are discussed.

Wade, Richard A.↗

Protein Molecular Dynamics Simulations with Approximate QM: What Can We Learn?

Classical force fields are essential for computer simulations of proteins and are typically parameterized to reproduce secondary and tertiary structure of isolated proteins. However, while protein-protein interactions are ubiquitous in nature, they are not considered in parameterization efforts and are far less understood than isolated proteins. A better characterization of intermolecular interactions is widely recognized as a key to revolutionizing drug and therapeutic developments with high-throughput computational screening. Urgently needed is a critical assessment of the performance of modern protein force fields against first-principles electronic structure methods and experiments. In a daring step toward this goal, we here describe a comparison of peptide folding dynamics as predicted by a molecular mechanics force field on the one hand and by an approximate electronic structure quantum mechanical (QM) method based on density-functional tight-binding (DFTB) on the other. We further compare the dynamics from straightforward DFTB simulations with a near-linear scaling version of DFTB for massively parallel computation based on the fragment molecular orbital (FMO-DFTB) method. We illustrate differences between the phenomenology of the folding dynamics from these three methods for a small model peptide, as well as charge polarization and dynamic fluctuations, point out possible correlations and implications for force field developers, and discuss the lessons learned that might become applicable to future predictive high-throughput computer screening for personalized neoantigen cancer therapy.

Irle, Stephan↗

Simulating X-ray Absorption Spectra with Linear-Response Density Cumulant Theory

We present a new approach for simulating X-ray absorption spectra based on linear-response density cumulant theory (LR-DCT) [Copan, A. V.; Sokolov, A. Yu. J. Chem. Theory Comput. 2018, 14, 4097–4108]. Our new method combines the LR-ODC-12 formulation of LR-DCT with core- valence separation approximation (CVS) that allows us to efficiently access high-energy core-excited states. We describe our computer implementation of the CVS-approximated LRODC-12 method (CVS-ODC-12) and benchmark its performance by comparing simulated X-ray absorption spectra to those obtained from experiment for several small molecules. Our results demonstrate that the CVS-ODC-12 method shows good agreement with experiment for relative spacings between transitions and their intensities, but the excitation energies are systematically overestimated. When compared to results from excited-state coupled cluster methods with single and double excitations, the CVS-ODC-12 method shows a similar performance for intensities and peak separations, while coupled cluster spectra are less shifted, relative to experiment. An important advantage of CVS-ODC-12 is that its excitation energies are computed by diagonalizing a Hermitian matrix, which enables efficient computation of transition intensities.

Peng, Ruojing↗

The no boundary density matrix

We discuss a no-boundary proposal for a subregion of the universe. In the classical approximation, this density matrix involves finding a specific classical solution of the equations of motion with no boundary. Beyond the usual no boundary condition at early times, we also have another no boundary condition in the region we trace out. We can find the prescription by starting from the usual Hartle-Hawking proposal for the wavefunction on a full slice and tracing out the unobserved region in the classical approximation. We discuss some specific subregions and compute the corresponding solutions. These geometries lead to phenomenologically unacceptable probabilities, as expected.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Comments on the double cone wormhole

In this paper we revisit the double cone wormhole introduced by Saad, Shenker and Stanford (SSS), which was shown to reproduce the ramp in the spectral form factor. As a first approximation we can say that this solution computes Tr[e –iKT ], a trace of the “evolution” operator that generates Schwarzschild time translations on the two sided wormhole geometry. This point of view leads to a simple way to compute the normalization factor of the wormhole. When we have bulk matter fields, SSS suggested using a modified evolution K ~ which involves a slightly complex geometry, so that we are really computing Tr[e –iK ~ T ]. We argue that, for general black holes, the spectrum of K ~ is given by quasinormal mode frequencies. We explain that this reproduces various features that were previously predicted from the spectral form factor on hydrodynamics grounds. We also give a general algebraic construction of the modified boost in terms of operators constructed from half sided modular inclusions. For the special case of JT gravity, we work out the backreaction of matter on the geometry of the double cone and find that it deforms the geometry in an undesirable direction. We finally give some comments on the possible physical interpretation of K ~ .

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Equivalence principle in Reissner–Nordström geometry

The Equivalence Principle is a key element in the development of General Relativity. In one of its formulations, the Equivalence Principle states that a reference frame at rest in a uniform gravitational field is equivalent to a reference frame in uniformly accelerated motion in the absence of any gravitation field. We analyze the spacetime surrounding a non-rotating spherically symmetric charged body, known as Reissner–Nordström geometry, and exhibit a coordinate transformation, which makes explicit its compatibility with the Equivalence Principle. We revisit the Schwarzschild case, previously analyzed in the literature. We also consider second order terms of the relevant expansion parameters in the approximate metric, which is needed for the computed curvature quantities to be correct at zeroth order.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Optimal carbon storage reservoir management through deep reinforcement learning

Model-based optimization plays a central role in energy system design and management. The complexity and high-dimensionality of many process-level models, especially those used for geosystem energy exploration and utilization, often lead to formidable computational costs when the dimension of decision space is also large. This work adopts elements of recently advanced deep learning techniques to solve a sequential decision-making problem in applied geosystem management. Specifically, a deep reinforcement learning framework was formed for optimal multiperiod planning, in which a deep Q-learning network (DQN) agent was trained to maximize rewards by learning from high-dimensional inputs and from exploitation of its past experiences. To expedite computation, deep multitask learning was used to approximate high-dimensional, multistate transition functions. Both DQN and deep multitask learning are pattern based. As a demonstration, the framework was applied to optimal carbon sequestration reservoir planning using two different types of management strategies: monitoring only and brine extraction. Both strategies are designed to mitigate potential risks due to pressure buildup. Results show that the DQN agent can identify the optimal policies to maximize the reward for given risk and cost constraints. Finally, experiments also show that knowledge the agent gained from interacting with one environment is largely preserved when deploying the same agent in other similar environments.

15 GEOTHERMAL ENERGY↗

A two-equation soot-in-flamelet modeling approach applied under Spray A conditions

Soot production (including formation and oxidation) is studied in the transient, high-pressure and turbulent n-dodecane Spray A flames from the Engine Combustion Network (ECN) using computational fluid dynamics (CFD) simulations. A two-equation soot-in-flamelet modeling approach is applied within the framework of the Unsteady Flamelet Progress Variable (UFPV) model and results are validated against experimental data. Equations for soot mass fraction and soot number density derived in the mixture fraction space are solved in the context of detailed flamelet calculations. Source terms for the different steps in the soot chemistry are tabulated and incorporated in the flamelet manifold. For the reference condition, the modeling approach based on the tabulated flamelet manifold reduces the computational cost of a CFD calculation by approximately 40 times compared to a non-tabulated well-mixed (WM) modeling approach. The soot-in-flamelet approach is then extended to study the effect of ambient oxygen concentration, ambient mixture composition and ambient temperature on soot production. Results show that the modeling approach is able to capture the experimental trends for the soot volume fraction (SVF) with good quantitative agreement, especially in the soot ramp-up region.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Stochastic scheduling of generating units with weekly energy storage: A hybrid decomposition approach

We propose a solution method for the large-scale stochastic unit commitment (SUC) problem with weekly-dispatched energy storage and significant weather-dependent stochastic generating capacity. Weekly storage facilities that mostly charge during weekends and discharge during weekdays require a weekly scheduling of generating units, which result in a large-scale optimization problem. This SUC problem is formulated as a two-stage stochastic model and we use the conditional value-at-risk as a risk measure. Using a Benders framework, the proposed solution method decomposes the problem into a mixed-integer linear master problem and linear and continuous subproblems. The master problem corresponds to the first-stage decisions throughout the week and includes all the commitment (binary) variables and their corresponding constraints. The subproblems correspond to the actual dispatch of the generating units on a weekly basis. Based on the success of column-and-constraint generation algorithms to solve robust optimization problems, we improve the low communication between the master problem and the subproblems in the standard Benders decomposition by adding primal variables and constraints from the subproblems to the master problem, which provides a better approximation of the recourse function. Furthermore, our computational experiments demonstrate the effectiveness of the proposed decomposition method using an instance of the South Carolina synthetic system with 90 generating units under 40 scenarios.

25 ENERGY STORAGE↗

A second-order distributed memory parallel fast sweeping method for the Eikonal equation

The Eikonal equation is used to calculate wave propagation and distance fields, and due to its complexity requires numerical treatment for its solution. In this work, we present a second-order distributed memory parallel fast sweeping method. The second-order solution switches on a two-point stencil when two upwind points are available, and reverts to first-order otherwise. In all examples, the second-order method improves the solution over the first-order, allowing for significant savings in memory while achieving the same accuracy. Parallelization over distributed memory saw good weak scaling with optimal convergence. The computational time for second-order was approximately 2.5 times slower than first-order, where the largest amount of mesh points ran on 144 cores (512 GB) was ≈20 billion. The savings in memory from the second-order method combined with the distributed memory algorithm result in the ability to solve problems much larger than are possible with the serial first-order method.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Measurement and analysis of GPU-accelerated applications with HPCToolkit

To address the challenge of performance analysis on the US DOE’s forthcoming exascale supercomputers, Rice University has been extending its HPCToolkit performance tools to support measurement and analysis of GPU-accelerated applications. To help developers understand the performance of accelerated applications as a whole, HPCToolkit’s measurement and analysis tools attribute metrics to calling contexts that span both CPUs and GPUs. To measure GPU-accelerated applications efficiently, HPCToolkit employs a novel wait-free data structure to coordinate monitoring and attribution of GPU performance. To help developers understand the performance of complex GPU code generated from high-level programming models, HPCToolkit constructs sophisticated approximations of call path profiles for GPU computations. To support fine-grained analysis and tuning, HPCToolkit uses PC sampling and instrumentation to measure and attribute GPU performance metrics to source lines, loops, and inlined code. To supplement fine-grained measurements, HPCToolkit can measure GPU kernel executions using hardware performance counters. To provide a view of how an execution evolves over time, HPCToolkit can collect, analyze, and visualize call path traces within and across nodes. Finally, on NVIDIA GPUs, HPCToolkit can derive and attribute a collection of useful performance metrics based on measurements using GPU PC samples. Here, we illustrate HPCToolkit’s new capabilities for analyzing GPU-accelerated applications with several codes developed as part of the Exascale Computing Project.

97 MATHEMATICS AND COMPUTING↗

Functional Relationships between Kinetic, Flow, and Geometrical Parameters in a High-Temperature Chemical Microreactor

Computational fluid dynamics (CFD) simulations and isothermal approximation were applied for the interpretation of experimental measurements of the C 10 H 7 Br pyrolysis efficiency in the high-temperature microreactor and of the pressure drop in the flow tube of the reactor. Applying isothermal approximation allows the derivation of analytical relationships between the kinetic, gas flow, and geometrical parameters of the microreactor, which, along with CFD simulations, accurately predict the experimental observations. On the basis of the obtained analytical relationships, a clear strategy for measuring rate coefficients of (pseudo) first-order bimolecular and unimolecular reactions using the microreactor was proposed. The pressure- and temperature-dependent rate coefficients for the C 10 H 7 Br pyrolysis calculated using variable reaction coordinate transition state theory were invoked to interpret the experimental data on the pyrolysis efficiency.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗