Search NASA⌕ Search

SEARCH · Search NASA

Results for “sequence features”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,549 records · Page 86
All sourcesNASA NTRSDOE OSTI
DOE OSTI2016

Effect of the linkers between the zinc fingers in zinc finger protein 809 on gene silencing and nuclear localization

Zinc finger protein 809 (ZFP809) belongs to the Kruppel-associated box-containing zinc finger protein (KRAB-ZFP) family and functions in repressing the expression of Moloney murine leukemia virus (MoMLV). ZFP809 binds to the primer-binding site (PBS)located downstream of the MoMLV-long terminal repeat (LTR) and induces epigenetic modifications at integration sites, such as repressive histone modifications and de novo DNA methylation. KRAB-ZFPs contain consensus TGEKP linkers between C2H2 zinc fingers. The phosphorylation of threonine residues within linkers leads to the inactivation of zinc finger binding to target sequences. ZFP809 also contains consensus linkers between zinc fingers. However, the function of ZFP809 linkers remains unknown. In the present study, we constructed ZFP809 proteins containing mutated linkers and examined their ability to silence transgene expression driven by MLV, binding ability to MLV PBS, and cellular localization. The results of the present study revealed that the linkers affected the ability of ZFP809 to silence transgene expression. Furthermore, this effect could be partly attributed to changes in the localization of ZFP809 proteins containing mutated linkers. Further characterization of ZFP809 linkers is required for understanding the functions and features of KRAB-ZFP-containing linkers. - Highlights: • ZFP809 has three consensus linkers between the zinc fingers. • Linkers are required for ZFP809 to silence transgene expression driven by MLV-LTR. • Linkers affect the precise nuclear localization of ZFP809.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2022

Atomic structure and Mott nature of the insulating charge density wave phase of 1T-TaS 2

Here, using x-ray pair distribution function (PDF) analysis and computer modeling, we explore structure models for the complex charge density wave (CDW) phases of layered 1T-TaS 2 that both well capture their atomic-level features and are amenable to electronic structure calculations. The models give the most probable position of constituent atoms in terms of 3D repetitive unit cells comprising a minimum number of Ta–S layers. Structure modeling results confirm the emergence of star-of-David (SD) like clusters of Ta atoms in the high-temperature incommensurate (IC) CDW phase and show that, contrary to the suggestions of recent studies, the low-temperature commensurate (C) CDW phase expands upon cooling thus reducing lattice strain. The C-CDW phase is also found to preserve the stacking sequence of Ta–S layers found in the room temperature, nearly commensurate (NC) CDW phase to a large extent. DFT based on the PDF refined model shows that bulk C-CDW 1T-TaS 2 also preserves the insulating state of individual layers of SD clusters, favoring the Mott physics description of the metal-to-insulator (NC-CDW to C-CDW) phase transition in 1T-TaS 2 . Our work highlights the importance of using precise crystal structure models in determining the nature of electronic phases in complex materials.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
NASA NTRS1984

The Design and Usage of the New Data Management Features in NASTRAN

Two new data management features are installed in the April 1984 release of NASTRAN. These two features are the Rigid Format Data Base and the READFILE capability. The Rigid Format Data Base is stored on external files in card image format and can be easily maintained and expanded by the use of standard text editors. This data base provides the user and the NASTRAN maintenance contractor with an easy means for making changes to a Rigid Format or for generating new Rigid Formats without unnecessary compilations and link editing of NASTRAN. Each Rigid Format entry in the data base contains the Direct Matrix Abstraction Program (DMAP), along with the associated restart, DMAP sequence subset and substructure control flags. The READFILE capability allows an user to reference an external secondary file from the NASTRAN primary input file and to read data from this secondary file. There is no limit to the number of external secondary files that may be referenced and read.

Pamidi, P. R.↗
NASA NTRS1994

Search for temperature-related albedo changes in nightside and posteclipse images of Io

Using an image-summing process that increases the visibility of Jupiterlit surface features in Voyager images, we have produced the best-ever violet-filter image of the nightside of Io and the best-ever nightside/dayside brightness ratio map of this jovian moon. The ratio map shows no convincing evidence, on either global or local scales, of diurnal temperature-dependent albedo variations. We have also taken an image-ratioing technique developed by O'Shaughnessy et al. (1989), which those authors applied to Voyager violet-filter observations of one Io eclipse reappearance, and extended it to two other, higher-resolution Voyager posteclipse imaging sequences. In none of three imaging sequences do we find any isolated surface regions that convincingly exhibit posteclipse temperature-related albedo variations. These negative results suggest that on Io, pure cyclo-octasulfur (S8), and transient nighttime or in-eclipse deposits of SO2 frost, are at best limited to isolated areas smaller than the resolution of the images in use (i.e., smaller than a few tens of kilometers in size). Such limits are consistent with (1) the negative results reported by the majority of telescopic observers who have searched for posteclipse brightening of Io, (2) indications that physical processes in the ionian surface environment will change any S8 into other allotropes of sulfur, and (3) suggestions that Io's atmosphere is too thin to allow the deposition of transient, optically thick SO2 frost layers at nighttime or during eclipse.

Simonelli, Damon P.↗
NASA NTRS2001

Ground-Based IR Spectroscopy of Mercury for Composition

Remote sensing measurements of the Moon and Mercury in the thermal infrared have been plagued with problems due to atmospheric absorption and other effects. Controversial results have been discussed by Nash et al. and by Salisbury et al.. We have developed a technique to obtain thermal infrared spectra of Mercury together with solar and sky spectra in the 8-13 micrometer region suitable for determining the presence or absence of mineralogical features. High-resolution (0.05 cm(exp -1) between data points) spectra were obtained during daylight using the Fourier Transform Spectrograph (FTS) at the McMath-Pierce Solar Telescope Facility at Kitt Peak National Observatory, Arizona. The reduced data were independent of any model of the transmission of the Earth's atmosphere and rest on a calibration using sky spectra along the same line-of-sight through the atmosphere as the actual Mercury raw spectrum. This method can be applied at all solar elongation angles including small elongation angles (5 deg or less). The basic sequence and the technique are robust.

Killen, Rosemary M.↗
NASA NTRS2002

Effect of Cooling Rate and Oxygen Fugacity on the Crystallization of the Queen Alexandra Range 94201 Martian Melt Composition

Although many basaltic shergottites have been recently found in north African deserts, QUE94201 basaltic shergottite (QUE) is still important because of its particular mineralogical and petrological features. This meteorite is thought to represent its parent melt composition [1 -3] and to crystallize under most reduced condition in this group [1,4]. We performed experimental study by using the synthetic glass that has the same composition as the bulk of QUE. After homogenization for 48 hours at 1300 C, isothermal and cooling experiments were done under various conditions (e.g. temperature, cooling rates, and redox states). Our goals are (1) to verify that QUE really represents its parent melt composition, (2) to estimate a cooling rate of this meteorite, (3) to clarify the crystallization sequences of present minerals, and (4) to verity that this meteorite really crystallized under reduced condition.

Koizumi, E.↗
DOE OSTI2016

High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1T, a gammaproteobacterium isolated from estuarine sediment

Abstract Sedimenticola selenatireducens strain AK4OH1 T (= DSM 17993 T = ATCC BAA-1233 T ) is a microaerophilic bacterium isolated from sediment from the Arthur Kill intertidal strait between New Jersey and Staten Island, NY. S. selenatireducens is Gram-negative and belongs to the Gammaproteobacteria . Strain AK4OH1 T was the first representative of its genus to be isolated for its unique coupling of the oxidation of aromatic acids to the respiration of selenate. It is a versatile heterotroph and can use a variety of carbon compounds, but can also grow lithoautotrophically under hypoxic and anaerobic conditions. The draft genome comprises 4,588,530 bp and 4276 predicted protein-coding genes including genes for the anaerobic degradation of 4-hydroxybenzoate and benzoate. Here we report the main features of the genome of S. selenatireducens strain AK4OH1 T .

4-hydroxybenzoate↗
DOE OSTI2018

The dynamics of adaptive genetic diversity during the early stages of clonal evolution

The dynamics of genetic diversity in large clonally evolving cell populations are poorly understood, despite having implications for the treatment of cancer and microbial infections. Here, we combine barcode lineage tracking, sequencing of adaptive clones and mathematical modelling of mutational dynamics to understand adaptive diversity changes during experimental evolution of Saccharomyces cerevisiae under nitrogen and carbon limitation. We find that, despite differences in beneficial mutational mechanisms and fitness effects, early adaptive genetic diversity increases predictably, driven by the expansion of many single-mutant lineages. Furthermore, a crash in adaptive diversity follows, caused by highly fit double-mutant ‘jackpot’ clones that are fed from exponentially growing single mutants, a process closely related to the classic Luria–Delbrück experiment. The diversity crash is likely to be a general feature of asexual evolution with clonal interference; however, both its timing and magnitude are stochastic and depend on the population size, the distribution of beneficial fitness effects and patterns of epistasis.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

Microplasticity of Amorphous and Crystallized Fe{sub 78}P{sub 20}Si{sub 2} Alloy

In order to determine the mechanism of plastic deformation, the hardness and local plasticity of amorphous Fe{sub 78}P{sub 20}Si{sub 2} alloy are compared at different stages of its crystallization activated by thermal treatment at 300–750°C or short-term photon treatment with a radiation dose coming to the sample of 10–60 J/cm{sup 2}. The phase composition and structure were investigated by X-ray diffractometry and high-resolution transmission electron microscopy. With the same sequence of structural changes, the crystallization rate under photon treatment is more than two orders of magnitude higher than that under thermal treatment, which indicates the effect of a high rate of input of the process activation energy. The nonmonotonic dependence of the hardness, elastic modulus, and the proportion of plastic strain in the indentation work is found, depending on the annealing temperature or radiation dose received by the sample, as a result of structural changes in the alloy. The local plasticity of the initial alloy and fully crystallized alloy are close in magnitude. Based on the features of the crystal structure of the Fe{sub 3}P phase (the impossibility of the dislocation mechanism of plastic deformation) and assuming that the structural unit (tetrahedral Fe{sub 3}P cluster) of the crystallized and amorphous alloy is identical, a conclusion was formulated about the cluster mechanism of plastic deformation of the amorphous alloy.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
NASA NTRS2000

Three-Dimensional Electron Optics Model Developed for Traveling-Wave Tubes

A three-dimensional traveling-wave tube (TWT) electron beam optics model including periodic permanent magnet (PPM) focusing has been developed at the NASA Glenn Research Center at Lewis Field. This accurate model allows a TWT designer to develop a focusing structure while reducing the expensive and time-consuming task of building the TWT and hot-testing it (with the electron beam). In addition, the model allows, for the first time, an investigation of the effect on TWT operation of the important azimuthally asymmetric features of the focusing stack. The TWT is a vacuum device that amplifies signals by transferring energy from an electron beam to a radiofrequency (RF) signal. A critically important component is the focusing structure, which keeps the electron beam from diverging and intercepting the RF slow wave circuit. Such an interception can result in excessive circuit heating and decreased efficiency, whereas excessive growth in the beam diameter can lead to backward wave oscillations and premature saturation, indicating a serious reduction in tube performance. The most commonly used focusing structure is the PPM stack, which consists of a sequence of cylindrical iron pole pieces and opposite-polarity magnets. Typically, two-dimensional electron optics codes are used in the design of magnetic focusing devices. In general, these codes track the beam from the gun downstream by solving equations of motion for the electron beam in static-electric and magnetic fields in an azimuthally symmetric structure. Because these two-dimensional codes cannot adequately simulate a number of important effects, the simulation code MAFIA (solution of Maxwell's equations by the Finite-Integration-Algorithm) was used at Glenn to develop a three-dimensional electron optics model. First, a PPM stack was modeled in three dimensions. Then, the fields obtained using the magnetostatic solver were loaded into a particle-in-cell solver where the fully three-dimensional behavior of the beam was simulated in the magnetic focusing field. For the first time, the effects of azimuthally asymmetric designs and critical azimuthally asymmetric characteristics of the focusing stack (such as shunts, C-magnets, or magnet misalignment) on electron beam behavior have been investigated. A cutaway portion of a simulated electron beam focused by a PPM stack is illustrated.

Kory, Carol L.↗
NASA NTRS2004

Passive IFF: Autonomous Nonintrusive Rapid Identification of Friendly Assets

A proposed optoelectronic instrument would identify targets rapidly, without need to radiate an interrogating signal, apply identifying marks to the targets, or equip the targets with transponders. The instrument was conceived as an identification, friend or foe (IFF) system in a battlefield setting, where it would be part of a targeting system for weapons, by providing rapid identification for aimed weapons to help in deciding whether and when to trigger them. The instrument could also be adapted to law-enforcement and industrial applications in which it is necessary to rapidly identify objects in view. The instrument would comprise mainly an optical correlator and a neural processor (see figure). The inherent parallel-processing speed and capability of the optical correlator would be exploited to obtain rapid identification of a set of probable targets within a scene of interest and to define regions within the scene for the neural processor to analyze. The neural processor would then concentrate on each region selected by the optical correlator in an effort to identify the target. Depending on whether or not a target was recognized by comparison of its image data with data in an internal database on which the neural processor was trained, the processor would generate an identifying signal (typically, friend or foe ). The time taken for this identification process would be less than the time needed by a human or robotic gunner to acquire a view of, and aim at, a target. An optical correlator that has been under development for several years and that has been demonstrated to be capable of tracking a cruise missile might be considered a prototype of the optical correlator in the proposed IFF instrument. This optical correlator features a 512-by-512-pixel input image frame and operates at an input frame rate of 60 Hz. It includes a spatial light modulator (SLM) for video-to-optical image conversion, a pair of precise lenses to effect Fourier transforms, a filter SLM for digital-to-optical correlation-filter data conversion, and a charge-coupled device (CCD) for detection of correlation peaks. In operation, the input scene grabbed by a video sensor is streamed into the input SLM. Precomputed correlation-filter data files representative of known targets are then downloaded and sequenced into the filter SLM at a rate of 1,000 Hz. When there occurs a match between the input target data and one of the known-target data files, the CCD detects a correlation peak at the location of the target. Distortion- invariant correlation filters from a bank of such filters are then sequenced through the optical correlator for each input frame. The net result is the rapid preliminary recognition of one or a few targets.

Moynihan, Philip↗
NASA NTRS1993

Solar imaging vector magnetograph

This report describes an instrument which has been constructed at the University of Hawaii to make observations of the magnetic field in solar active regions. Detailed knowledge of active region magnetic structures is crucial to understanding many solar phenomena, because the magnetic field both defines the morphology of structures seen in the solar atmosphere and is the apparent energy source for solar flares. The new vector magnetograph was conceived in response to a perceived discrepancy between the capabilities of X ray imaging telescopes to be operating during the current solar maximum and those of existing magnetographs. There were no space-based magnetographs planned for this period; the existing ground-based instruments variously suffered from lack of sensitivity, poor time resolution, inadequate spatial resolution or unreliable sites. Yet the studies of flares and their relationship to the solar corona planned for the 1991-1994 maximum absolutely required high quality vector magnetic field measurements. By 'vector' measurements we mean that the observation attempts to deduce the complete strength and direction of the field at the measurement site, rather than just the line of sight component as obtained by a traditional longitudinal magnetograph. Knowledge of the vector field permits one to calculate photospheric electric currents, which might play a part in heating the corona, and to calculate energy stored in coronal magnetic fields as the result of such currents. Information about the strength and direction of magnetic fields in the solar atmosphere can be obtained in a number of ways, but quantitative data is best obtained by observing Zeeman-effect polarization in solar spectral lines. The technique requires measuring the complete state of polarization at one or more wavelengths within a magnetically sensitive line of the solar spectrum. This measurement must be done for each independent spatial point for which one wants magnetic field data. All the measurements need to be done in a time short compared to the time scale for changes of the solar features being observed. Were it possible, one would want to record all the needed data simultaneously, since temporal variation of atmospheric seeing degrades both the image and the polarization sensitivity. Since the measurements must span four dimensions, two spatial plus polarization and wavelength, we had some freedom to design the instrument to favor some dimensions over others in terms of simultaneity. Our earlier instrument, the Haleakala Stokes Polarimeter, records a range of wavelengths spanning two spectral lines in each reading, but requires two seconds to determine the polarization state and obtains spatial information only by assembling a long sequence of measurements at single locations on the sun. The new instrument sacrifices spectral detail and accuracy in favor of greatly improved imaging characteristics. The scientific goals for this instrument were to measure surface magnetic fields with enough accuracy to permit calculations of photospheric currents, but with a field of view covering an entire typical active region, high spatial resolution, and a fast enough temporal cadence for detecting flare-associated changes in magnetic structures.

Canfield, Richard C.↗
NASA NTRS1992

Hey! What's Space Station Freedom?

This video, 'Hey! What's Space Station Freedom?', has been produced as a classroom tool geared toward middle school children. There are three segments to this video. Segment One is a message to teachers presented by Dr. Jeannine Duane, New Jersey, 'Teacher in Space'. Segment Two is a brief Social Studies section and features a series of Presidential Announcements by President John F. Kennedy (May 1961), President Ronald Reagan (July 1982), and President George Bush (July 1989). These historical announcements are speeches concerning the present and future objectives of the United States' space programs. In the last segment, Charlie Walker, former Space Shuttle astronaut, teaches a group of middle school children, through models, computer animation, and actual footage, what Space Station Freedom is, who is involved in its construction, how it is to be built, what each of the modules on the station is for, and how long and in what sequence this construction will occur. There is a brief animation segment where, through the use of cartoons, the children fly up to Space Station Freedom as astronauts, perform several experiments and are given a tour of the station, and fly back to Earth. Space Station Freedom will take four years to build and will have three lab modules, one from ESA and another from Japan, and one habitation module for the astronauts to live in.

Vonehrenfried, Dutch↗
NASA NTRS2003

Investigation of the Short-Time Variability of Tropical Tropospheric Ozone

Since 1998, a ground based tropospheric ozone lidar has been running at Reunion Island and has been involved with a daily measurement campaign that was performed in the latter part of the biomass burning season, during November-December 1999. The averaged ozone profile obtained during November-December 1 999 agrees well with averaged ozone profile obtained from ozonesondes launch at Reunion during November-December (1992- 2001). Comparing weekly sonde launches (part of the Southern Hemisphere Additional Ozonesondes: SHADOZ program) with the daily ground-based lidar observations shows that some striking features of the day to day variability profiles are not observed in the sonde measurements. Ozone profiles respond to the nature of disturbances which vary from the one day to the next. The vertical ozone distribution at Reunion is examined as a function of prevailing atmospheric circulation. Backtrajectories show that most of the enhanced ozone crossed over biomass burning and convectively active regions in Madagascar and the southern African continent. The analyses of the meteorological data show that ozone stratification profiles are in agreement with the movement of the synoptical situations in November-December 1999. Three different sequences of transport are explained using wind fields. The first sequence from 23 to 25 November is characterized by Northerly transport, the second sequence from 26 to 30 November, the air masses are influenced by meridional transport. The third sequence from 2 to 6 December is characterized by westerly transport associated with the subtropical jet stream. The large standard deviations of lidar profiles in the middle and upper troposphere are in agreement with the upper wind variabilities which evidence passing ridge and trough disturbances. During the transition period between the dry season and the wet season, multiple ozone sources including stratosphere-troposphere exchanges, convection and biomass burning contribute to tropospheric ozone at Reunion Island through sporadic events characterized by a large spatial and temporal variability.

Randriambelo, Tantely↗
DOE OSTI2022

Examining the Performance of MIL-STD-188-110D Waveform 0 Against FBMC-SS Over Skywave HF Channels

This paper provides a comprehensive performance comparison between a current robust military waveform; namely, MIL-STD-188-110D, Waveform 0, and a filter bank multicarrier spread-spectrum (FBMC-SS) waveform proposed for communications through ionospheric/skywave HF channels. Waveform 0 is effectively a direct sequence spread spectrum waveform that uses Walsh multi-codes to enhance the information transmission rate. It may thus be referred to as Walsh-DSSS. FBMC-SS, on the other hand, makes use of filter banks to provide excellent performance when the received signal is subject to partial band interference. Successful application of FBMC-SS for communications across skywave HF channels has been previously demonstrated, both theoretically and through experimental work. However, very little has been done to contrast FBMC-SS against Walsh-DSSS. The goal of this paper is to first add new features to FBMC-SS to bring it on par with Walsh-DSSS. These features include: (i), introduction of multi-codes that achieve a comparable (or better) data rate to Walsh-DSSS; and (ii), addition of a scrambling step applied to the multi-codes to make the receiver detection robust against widely spread multipaths. With this established, in the second part of the paper, we examine the performance of the developed FBMC-SS against Walsh-DSSS when both are applied for communications across skywave HF channels. The two waveforms are compared both through a theoretical study and through experimental works across several skywave channels ranging from hundreds to thousands of kilometers.

42 ENGINEERING↗
DOE OSTI2019

CDR3α drives selection of the immunodominant Epstein Barr virus (EBV) BRLF1-specific CD8 T cell receptor repertoire in primary infection

The T cell receptor (TCR) repertoire is an essential component of the CD8 T-cell immune response. Here, we seek to investigate factors that drive selection of TCR repertoires specific to the HLA-A2-restricted immunodominant epitope BRLF1 109-117 (YVLDHLIVV) over the course of primary Epstein Barr virus (EBV) infection. Using single-cell paired TCRαβ sequencing of tetramer sorted CD8 T cells ex vivo , we show at the clonal level that recognition of the HLA-A2-restricted BRLF1 (YVL-BR, BRLF-1109) epitope is mainly driven by the TCRα chain. For the first time, we identify a CDR3α (complementarity determining region 3 α) motif, KDTDKL, resulting from an obligate AV8.1-AJ34 pairing that was shared by all four individuals studied. This observation coupled with the fact that this public AV8.1-KDTDKL-AJ34 TCR pairs with multiple different TCRβ chains within the same donor (median 4; range: 1–9), suggests that there are some unique structural features of the interaction between the YVL-BR/MHC and the AV8.1-KDTDKL-AJ34 TCR that leads to this high level of selection. Newly developed TCR motif algorithms identified a lysine at position 1 of the CDR3α motif that is highly conserved and likely important for antigen recognition. Crystal structure analysis of the YVL-BR/HLA-A2 complex revealed that the MHC-bound peptide bulges at position 4, exposing a negatively charged aspartic acid that may interact with the positively charged lysine of CDR3α. TCR cloning and site-directed mutagenesis of the CDR3α lysine ablated YVL-BR-tetramer staining and substantially reduced CD69 upregulation on TCR mutant-transduced cells following antigen-specific stimulation. Reduced activation of T cells expressing this CDR3 motif was also observed following exposure to mutated (D4A) peptide. In summary, we show that a highly public TCR repertoire to an immunodominant epitope of a common human virus is almost completely selected on the basis of CDR3α and provide a likely structural basis for the selection. These studies emphasize the importance of examining TCRα, as well as TCRβ, in understanding the CD8 T cell receptor repertoire.

Microbiology↗
DOE OSTI2021

Plant Single-Cell Solutions for Energy and the Environment (Second Workshop Report)

Plants are important sources of energy and materials, and they collectively represent a critical component of Earth’s ecosystem. With increasing environmental stresses due to climate change and intensive agricultural practices, the need for resilient plants is greater than ever before. To secure plant resources for bioenergy, biomaterials, food, and ecosystem adaptation, a deeper understanding of the fundamental biology of plants at a cellular level is urgently needed. Plants contain a multitude of specialized cell types that compose tissues and organs. Pathogens often target specific cell types within plants, and the response of one cell to a particular stimulus is likely to be distinct from its neighbor because of underlying molecular and contextual differences. Understanding how these responses are distributed among cells, the main goal of single-cell approaches, will substantially enhance our ability to use targeted engineering for improving plant productivity and resilience. Furthermore, single-cell approaches are necessary to understand the interactions between plants and other ecosystem members such as fungi, bacteria, and archaea. Unlocking these gene-response mechanisms at a cellular level can improve our ability to adapt plants to environmental stresses, increasing their utility as feedstocks for biomaterials and bioenergy. Recent advances in high-throughput sequencing, mass spectrometry, microfluidics and miniaturization, artificial intelligence and machine learning, and bioinformatics have greatly improved our ability to detect and understand processes at a cellular level. In mammalian systems, single-cell transcriptomics has already led to many advances, such as newly identified cell types and cell-targeted treatment of diseases, and mass spectrometry-based single-cell proteomics has recently been demonstrated as a promising emerging technology. However, plant single-cell omics has lagged behind mammalian approaches due to the high cost of the technologies relative to available resources and to the innate biological features of plants, including the complexity of the cell wall and polyploidy. To better understand how single-cell methods could enable plant science, Lawrence Berkeley National Laboratory (Berkeley Lab) hosted a workshop on April 29, 2021, that brought together a diverse group of leaders in plant and/or single-cell biology. Attendees represented federal research programs and domestic and international academic institutions. During the workshop, three presenters described the current state of research in both experimental and computational approaches. While the focus of the workshop was on factors preventing plant biology researchers from fully adopting single-cell methodologies, workshop participants agreed that most barriers could be overcome with focused, strategic investment and coordinated efforts among institutions leading to significant scientific discoveries that would be difficult to obtain using more conventional technologies.

59 BASIC BIOLOGICAL SCIENCES↗