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At least 1,549 records · Page 86

Untargeted Spatial Metabolomics and Spatial Proteomics on the Same Tissue Section

An increasing number of spatial multiomic workflows have been recently developed. Some of these approaches have leveraged initial mass spectrometry imaging (MSI)-based spatial metabolomics to inform region of interest (ROI) selection for downstream spatial proteomics. However, these workflows have been limited by varied substrate requirements between modalities or have required analyzing serial sections (i.e., one section per modality). To mitigate these issues, we present a novel multiomic workflow that uses desorption electrospray ionization (DESI)-MSI to identify representative spatial metabolite patterns on-tissue prior to spatial proteomic analyses on the same tissue section. Further, this workflow is demonstrated here with a model mammalian tissue (coronal rat brain section) mounted on a polyethylene naphthalate-membrane slide. Initial DESI-MSI resulted in 160 annotations (SwissLipids) within to the METASPACE platform (≤20% false discovery rate). A segmentation map from the annotated ion images informed downstream ROI selection for spatial proteomics characterization from the same sample. The unspecific substrate requirements and minimal sample disruption inherent to DESI-MSI allowed for an optimized, downstream spatial proteomics assay, resulting in 3888 ± 240 to 4717 ± 48 proteins being confidently directed per ROI (200 µm x 200 µm). Finally, we demonstrate the integration of multiomic information, where we found ceramide localization to be correlated with SMPD3 abundance (ceramide synthesis protein), and we also utilized protein abundance to resolve metabolite isomeric ambiguity. Overall, the integration of DESI-MSI into the multiomic workflow allows for complementary spatial and molecular-level information to be achieved from optimized implementations of each MS assay inherent to the workflow itself.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

rmap: An R package to plot and compare tabular data on customizable maps across scenarios and time

`rmap` is an R package that allows users to easily plot tabular data (CSV or R data frames) on maps without any Geographic Information Systems (GIS) knowledge. Maps produced by `rmap` are `ggplot` objects and thus capitalize on the flexibility and advancements of the `ggplot2` package and all elements of each map are thus fully customizable. Additionally `rmap` automatically detects and produces comparison maps if the data has multiple scenarios or time periods as well as animations for time series data. Advanced users can load their own shapefiles if desired. `rmap` comes with a range of pre-built color palettes but users can also provide any `R` color palette or create their own as needed. Four different legend types are available to highlight different kinds of data distributions. The input spatial data can be both gridded or polygon data. `rmap` is desgined in particular for comparing spatial data across scenarios and time periods and comes preloaded with standard country, state, and basin maps as well as custom maps compatible with the Global Change Analysis Model (GCAM) spatial boundaries. `rmap` has a growing number of users and its products have been used in multiple multisector dynamics publications as well as a required dependency in other R packages such as `rfasst` and `metis`. `rmap's` automatic processing of tabular data using pre-built map selection, difference map calculations, faceting, and animations offers unique functionality which makes it a powerful and yet simple tool for users looking to explore multi-sector, multi-scenario data across space and time.

58 GEOSCIENCES↗

A hybrid CNN-LSTM surrogate model for hyper-resolution spatiotemporal flood forecasting in Norfolk, Virginia

Study region: Norfolk, Virginia, United States Study focus: Accurate and timely flood forecasting is essential for enhancing resilience in coastal urban areas in the context of increasing frequency and intensity of rainfall, sea level rise and urbanization. This study presents a hybrid deep learning-based surrogate model that integrates Convolutional Neural Networks (CNN) and Long Short-Term Memory (LSTM) networks to enable real-time spatiotemporal flood forecasting. The model leverages CNN to capture spatial features from inputs such as elevation and Topographic Wetness Index (TWI), while LSTM processes time-series inputs of rainfall and tide data to capture temporal features. New hydrologic insights for the region: The hybrid CNN-LSTM model was trained using the physics-based hydrodynamic model simulations obtained from the Two-dimensional Unsteady FLOW (TUFLOW) model for Norfolk, Virginia, and achieved high predictive accuracy across diverse flood-prone areas. The reduced computational time from four to six hours using TUFLOW to 3.2 min per event using CNN-LSTM enables rapid flood inundation mapping and early warning applications. The model effectively captured both spatial flood extents and their temporal evolution across different flooding scenarios, providing forecasts at a 2.5-m spatial resolution and 15-min temporal resolution and a one-hour-ahead prediction horizon. While challenges remain in terms of transferability to new regions and real-time data assimilation, this approach demonstrates strong potential for supporting operational flood risk management in coastal urban environments.

Coastal urban flooding↗

Flux Channeling Induced Nanoconfinement and Enhancement of Microwaves Imaged by Rabi Oscillation Mapping

With rapid advances in qubit technologies, techniques for localizing, modulating, and measuring RF fields and their impact on qubit performance are of the utmost importance. Here, we demonstrate that flux-channeling from a permalloy nanowire can be used to achieve localized spatial modulation of an RF field and that the modulated field can be mapped with high resolution by using the Rabi oscillations of an NV center. Rabi maps reveal ∼100 mm wavelength microwaves concentrated in sub-300 nm regions with up to ∼16× power enhancement. This modulation is robust over a 20 dBm power range and has no adverse impact on NV T 2 coherence time. Micromagnetic simulations confirm that the modulated field results from the nanowire’s stray field through its constructive/destructive interference with the incident RF field. Our findings provide a new pathway for controlling qubits, amplifying RF signals, and mapping local fields in various on-chip RF technologies.

Diamond↗

Mathematical Inversion of Lightning Data: Techniques and Applications

A survey of some interesting mathematical inversion studies dealing with radio, optical, and electrostatic measurements of lightning are presented. A discussion of why NASA is interested in lightning, what specific physical properties of lightning are retrieved, and what mathematical techniques are used to perform the retrievals are discussed. In particular, a relatively new multi-station VHF time-of-arrival (TOA) antenna network is now on-line in Northern Alabama and will be discussed. The network, called the Lightning Mapping Array (LMA), employs GPS timing and detects VHF radiation from discrete segments (effectively point emitters) that comprise the channel of lightning strokes within cloud and ground flashes. The LMA supports on-going ground-validation activities of the low Earth orbiting Lightning Imaging Sensor (LIS) satellite developed at NASA Marshall Space Flight Center (MSFC) in Huntsville, Alabama. The LMA also provides detailed studies of the distribution and evolution of thunderstorms and lightning in the Tennessee Valley, and offers interesting comparisons with other meteorological/geophysical datasets. In order to take full advantage of these benefits, it is essential that the LMA channel mapping accuracy (in both space and time) be fully characterized and optimized. A new channel mapping retrieval algorithm is introduced for this purpose. To characterize the spatial distribution of retrieval errors, the algorithm has been applied to analyze literally tens of millions of computer-simulated lightning VHF point sources that have been placed at various ranges, azimuths, and altitudes relative to the LMA network. Statistical results are conveniently summarized in high-resolution, color-coded, error maps.

Koshak, William↗

Spatial and temporal behavior of atomic oxygen determined by Ogo 6 airglow observations

Maps are produced of the atomic oxygen density near 97 km showing a strong variation in latitude, longitude, universal time, and time of year. These densities are deduced from atomic oxygen green nightglow observations carried out from Ogo 6. Meridional wind patterns needed to support the asymmetries observed in local oxygen production and loss rates are deduced.

Donahue, T. M.↗

Mars: Correcting surface albedo observations for effects of atmospheric dust loading

We have developed a radiative transfer model which allows the effects of atmospheric dust loading on surface albedo to be investigated. This model incorporates atmospheric dust opacity, the single scattering albedo and particle phase function of atmospheric dust, the bidirectional reflectance of the surface, and variable lighting and viewing geometry. The most recent dust particle properties are utilized. The spatial and temporal variability of atmospheric opacity (Tan) strongly influences the radiative transfer modelling results. We are currently using the approach described to determine Tan for IRTM mapping sequences of selected regions. This approach allows Tan to be determined at the highest spatial and temporal resolution supported by the IRTM data. Applying the radiative transfer modelling and determination of Tan described, IRTM visual brightness observations can be corrected for the effects of atmospheric dust loading a variety of locations and times. This approach allows maps of 'dust-corrected surface albedo' to be constructed for selected regions. Information on the variability of surface albedo and the amount of dust deposition/erosion related to such variability results. To date, this study indicates that atmospheric dust loading has a significant effect on observations of surface albedo, amounting to albedo corrections of as much as several tens of percent. This correction is not constant or linear, but depends upon surface albedo, viewing and lighting geometry, the dust and surface phase functions, and the atmospheric opacity. It is clear that the quantitative study of surface albedo, especially where small variations in observed albedo are important (such as photometric analyses), needs to account for the effects of the atmospheric dust loading. Maps of 'dust-corrected surface albedo' will be presented for a number of regions.

Lee, S. W.↗

The spatial variation of the infrared-to-radio ratio in spiral galaxies

We have produced two-dimensional maps of the intensity ratio, Q(sub 60), of 60 micron infrared to 20 cm radio continuum emission, for a set of 25 nearby galaxies, mostly spirals. The ratio maps were obtained from infrared images made using IRAS data with the maximum correlation method, and radio images made using VLA data. Before taking the ratio, the radio images were processed so as to have the same resolution properties as the infrared images; the final spatial resolution in all cases is approximately 1 min, corresponding to 1 - 2 kpc for most galaxies. This resolution represents a significant improvement over previous studies. Our new high-resolution maps confirm the slow decrease of Q(sub 60) with increasing radial distance from the nucleus, but show additional structure which is probably associated with separate sites of active star formation in the spiral arms. The maps show Q(sub 60) to be more closely related to infrared surface brightness than to the radial distance r in the galaxy disk. We note also that the Q(sub 60) gradients are absent (or at least reduced) for the edge-on galaxies, a property which can be attributed to the dilution of contrast due to the averaging of the additional structure along the line of sight. The results are all in qualitative agreement with the suggestion that the radio image represents a smeared version of the infrared image, as would be expected on the basis of current models in which the infrared-radio correlation is driven by the formation of massive stars, and the intensity distribution of radio emission is smeared as a result of the propagation of energetic electrons accelerated during the supernova phase.

Marsh, K. A.↗

Tracking of oxide formation in laser-produced uranium plasmas

We use a spatially and temporally resolved emission tracking technique based on optical emission spectroscopy to map the evolution of emission features from uranium and its com- pounds in a plasma produced by a nanosecond laser. We observe quenching of the emission from neutral uranium (591.538 nm) and uranium monoxide (593.55 nm) species with increasing oxygen concentration and discuss possible reaction pathways for dissociation or formation of higher uranium oxides U x O y . Here, we further identify spectral features between 320 nm and 380 nm and between 520 nm and 640 nm, which we attribute to U x O y .

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Alternate Inversion Paradigm for Spectroheliogram Data

Over the past five years, new methods to reconstruct spectrally pure maps of the Sun from spectroheliogram data have emerged, essentially unlocking this long-abandoned method of obtaining both spatial and spectral information over a large field of view simultaneously. The original inversion method determined the plasma’s emission measure distribution as a function of temperature at every spatial location in the field of view. To complete this inversion, a response matrix had to be created mapping the emission measure in different (temperature, space) bins to detector, requiring assumptions on the thermal and ionization equilibrium and abundance state of the plasma. We have since derived a new method of the inversion that does not require these atomic assumptions to be made. Instead, we use only the different locations of spectral lines from the same ion species and the possible ratios of those single-species spectral lines, removing the need for a priori knowledge on the state of the emitting plasma. In this presentation, we demonstrate this method using observed data from the Marshall Grazing Incidence X-ray Spectrometer (MaGIXS) and simulated data from the EUV CME and Coronal Connectivity Observatory (ECCCO) investigation.

Amy Winebarger↗

A robust high sensitivity scanning thermal probe for simultaneous microscale thermal and thermoelectric property mapping

Scanning Thermal Microscopy (SThM) provides efficient thermal property measurement with micro- or nanoscale spatial resolution. However, the sensitivity and accuracy of state-of-the-art thermal probes have been limited by excessive thermal contact resistance between the probe and sample. Introduced herein is a robust thermal microprobe that can increase the probe-sample contact force by more than two orders of magnitude, thereby reducing the probe-sample thermal contact resistance by as much as 96% and increasing measurement sensitivity by more than 240% compared to a commercial thermal probe with the same dimensions and measurement principle. The relationship between the probe-sample thermal contact resistance, thermal exchange radius, and sample thermal conductivity is determined experimentally. Simultaneous measurement of thermal conductivity and Seebeck coefficient with unprecedented sensitivity is demonstrated using the enhanced scanning thermal microprobe on samples of an extended range of thermal conductivity up to 18 W/m K, increasing the range of samples applicable to SThM when compared to the conventional commercial probe with diminished measurement sensitivity above ~10 W/m K. The probe is further demonstrated by simultaneously mapping thermal conductivity and Seebeck coefficient as a function of depth from the irradiated surface of an ion-irradiated bulk nanostructured thermoelectric material. In addition to enabling microscale thermal conductivity and Seebeck coefficient measurement of materials previously not applicable to SThM, the probe can also facilitate high-throughput characterization of combinatorial materials to aid the rapid discovery of compositions and processing conditions that yield highly desired thermal and thermoelectric properties.

36 MATERIALS SCIENCE↗

Performance evaluation of the JPL TOPSAR system: An across-track interferometric SAR system for topographic mapping

An across-track interferometric (XTI) SAR has the capability of determining the three dimensional target location from the recorded radar echos thus providing high spatial resolution both horizontally and vertically. The output of an XTI SAR will typically include both a radar backscatter map and a digital elevation model (DEM). The accuracy of the derived DEM is determined by factors such as data acquisition geometry, signal-to-noise ratio, knowledge of platform position and attitude as well as the accuracy of the processing system. In the summer of 1992 the authors acquired TOPSAR data over the Ft. Irwin area in California, a desert area with significant relief (height standard deviation 150 m). Very accurate DEM's have been derived for this area by the Topographic Engineering Center (TEC) using digital correlation methods on 1:20,000 scale digitized photographs. Corner reflectors were deployed in the area, and their locations were determined to cm accuracies by the Defense Mapping Agency (DMA) using differential GPS techniques. DEM's generated from the acquired radar data have been rotated and translated to overlay the reference DEM's provided by TEC. A detailed description of the errors and their characteristics will be given. The standard deviations of the radar data sets we acquired measured over a 5.6 by 7 km area were 1.9 and 2.3 m. The corresponding numbers for flat areas were 1.1 and 2.0 m and for mountain areas 3.3 and 2.2 m.

Madsen, Soren N.↗

Large-scale Gulf Stream frontal study using GEOS 3 radar altimeter data

From data obtained by the GEOS 3 radar altimeter, sea surface heights are found by both editing and filtering the raw sea surface height measurements and then referencing these processed data to a 5 foot by 5 foot geoid. Any trend between the processed data and the geoid is removed by subtracting out a linear fit to the residuals in the open ocean. Data from individual passes are further processed by applying a minimum variance technique at the subsatellite crossing points to produce surface topography maps for the 6 months and an overall mean map which reveal important details about the Gulf Stream system. The differences between the monthly mean and the overall mean are calculated for each of the 6 months to show the temporal and spatial changes of the Gulf Stream front and spawned eddies. The standard deviation map is even more informative and shows preferred locations of Gulf Stream meanders.

Huang, N. E.↗

X-ray fluorescence mapping: Insights into mesoscale structure impact on battery functional electrochemistry

Abstract Electron transfer and ion transport occurs over multiple-length scales ranging from the atomic to mesoscale within battery materials and electrodes. Micro-X-ray fluorescence (µ-XRF) is an important characterization tool as it can resolve structural, compositional, and redox information while providing insight into the spatial distribution of an electroactive material. In this work, µ-XRF mapping is used to probe the distribution of iron within thin planar slurry-based and thick porous carbon nanotube (CNT)-based magnetite (Fe 3 O 4 ) electrodes. Notably, the porous CNT-based electrode showed homogenous distribution of Fe within the electrode whereas the planar electrode demonstrated distinct Fe aggregates. This information was used to rationalize the electrochemistry observed by cyclic voltammetry and galvanostatic cycling. The thick porous electrode delivered 215% more capacity per gram of magnetite during the first discharge, consistent with increased electrode homogeneity enabling effective ion access and electron transfer. Graphical Abstract

Sadique, Nahian↗

Application of Modern Design of Experiments to CARS Thermometry in a Model Scramjet Engine

We have applied formal experiment design and analysis to optimize the measurement of temperature in a supersonic combustor at NASA Langley Research Center. We used the coherent anti-Stokes Raman spectroscopy (CARS) technique to map the temperature distribution in the flowfield downstream of an 1160 K, Mach 2 freestream into which supersonic hydrogen fuel is injected at an angle of 30 degrees. CARS thermometry is inherently a single-point measurement technique; it was used to map thc flow by translating the measurement volume through the flowfield. The method known as "Modern Design of Experiments" (MDOE) was used to estimate the data volume required, design the test matrix, perform the experiment and analyze the resulting data. MDOE allowed us to match the volume of data acquired to the precision requirements of the customer. Furthermore, one aspect of MDOE, known as response surface methodology, allowed us to develop precise maps of the flowfield temperature, allowing interpolation between measurement points. An analytic function in two spatial variables was fit to the data from a single measurement plane. Fitting with a Cosine Series Bivariate Function allowed the mean temperature to be mapped with 95% confidence interval half-widths of +/- 30 Kelvin, comfortably meeting the confidence of +/- 50 Kelvin specified prior to performing the experiments. We estimate that applying MDOE to the present experiment saved a factor of 5 in data volume acquired, compared to experiments executed in the traditional manner. Furthermore, the precision requirements could have been met with less than half the data acquired.

Danehy, P. M.↗

Patterned probes for high precision 4D-STEM bragg measurements

Nanoscale strain mapping by four-dimensional scanning transmission electron microscopy (4D-STEM) relies on determining the precise locations of Bragg-scattered electrons in a sequence of diffraction patterns, a task which is complicated by dynamical scattering, inelastic scattering, and shot noise. These features hinder accurate automated computational detection and position measurement of the diffracted disks, limiting the precision of measurements of local deformation. Here, we investigate the use of patterned probes to improve the precision of strain mapping. We imprint a "bullseye" pattern onto the probe, by using a binary mask in the probe-forming aperture, to improve the robustness of the peak finding algorithm to intensity modulations inside the diffracted disks. We show that this imprinting leads to substantially improved strain-mapping precision at the expense of a slight decrease in spatial resolution. In experiments on an unstrained silicon reference sample, we observe an improvement in strain measurement precision from 2.7% of the reciprocal lattice vectors with standard probes to 0.3% using bullseye probes for a thin sample, and an improvement from 4.7% to 0.8% for a thick sample. Additionally, we use multislice simulations to explore how sample thickness and electron dose limit the attainable accuracy and precision for 4D-STEM strain measurements.

47 OTHER INSTRUMENTATION↗

Feedback on Forty-year Long Clean-up Operations of a Contaminated Soil for Environmental Purpose - 20026

One of the CEA facilities in France is the place of miscellaneous mapping and clean-up operations since the 1980's. The final purpose of the conducted work deals with the environmental remediation of the building. In France, the absence of a regulatory framework for the management of sites polluted by radioactive substances, especially as the lack of release thresholds, has led to develop different approaches of soil radiological characterization. The geostatistical approach is part of them. Preliminary investigations are an unavoidable step prior to clearance and remediation. First, historical analysis enables to define site perimeters to investigate as well as to precisely locate expected contaminated parts. For radioactive pollutants, the media (water, soil, air) and transfer routes participate in the definition of the investigation perimeter and thus also need to be identified through a geological study. At the same time, functional analysis leads to choose the best measurement means which could provide useful information when combined with visual inspection. An equipment well adapted to easy-to-measure radionuclides as gamma emitters, such as gamma probe or on-site gamma spectrometry, is usually selected as a non-destructive assay. Coupled with spatial positions, processed on-site radiological data can be mapped. Data processing consists in mapping and kriging before a geostatistical analysis in order to identify the zones of interest to be targeted. Selected zones are not only linked to high level count rates but also to low level ones so that a pollution-free reference is known in the area. This data processing also enables to categorize waste types according to their origin and contamination levels. An expected volume of different waste then follows as well as the waste characterization equipments. In-depth investigations, e.g. core drillings and samplings, naturally ensue to aim at remediation optimization through the assessment of environmental impact. After clean-up operations, non-destructive assays as well as destructive samplings enable to check the effective clearance. Following this methodology in the present remediation work, results of the first non-destructive assay campaign highlighted a long-lived transuranic radionuclides contamination in the concrete flagstone. Successive non-destructive assays were then performed in the defined zones of interest. Count rates measured with a surface probe were first mapped. The best localization of destructive assays, i.e. core drillings at a 1 meter depth, came from this surface mapping followed by a geostatistical analysis. The concrete flagstone was totally removed. Then, the depth of soil to remove under the flagstone was optimized from the results of radiological activities measured in core drillings samples. A new surface mapping was then drawn after this partial soil excavation. The sand and demolition rubble samples, homogeneously constituted from the flagstone fragments, were analyzed by gamma spectrometry. Meanwhile, waste drums and other containers were also measured by gamma spectrometry and passive neutron measurement devices. All these results have brought miscellaneous pieces of information. In this context, major issues appear in terms of physical constraints such as the premises tininess as well as of soil sampling techniques and in terms of measurement performances assessment and the representativeness of homogeneous samples. The choice of radiological soil and waste characterization devices is described in the light of enhanced performances by keeping in mind radiation protection requirements and a willing to always optimize waste categories (very low level waste) and volume. The improvement of the characterization methods appears through this forty-year long work while sharing the feedback of encountered difficulties. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗