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At least 1,567 records · Page 87

TH-AB-202-08: A Robust Real-Time Surface Reconstruction Method On Point Clouds Captured From a 3D Surface Photogrammetry System

Purpose: Surface photogrammetry (e.g. VisionRT, C-Rad) provides a noninvasive way to obtain high-frequency measurement for patient motion monitoring in radiotherapy. This work aims to develop a real-time surface reconstruction method on the acquired point clouds, whose acquisitions are subject to noise and missing measurements. In contrast to existing surface reconstruction methods that are usually computationally expensive, the proposed method reconstructs continuous surfaces with comparable accuracy in real-time. Methods: The key idea in our method is to solve and propagate a sparse linear relationship from the point cloud (measurement) manifold to the surface (reconstruction) manifold, taking advantage of the similarity in local geometric topology in both manifolds. With consistent point cloud acquisition, we propose a sparse regression (SR) model to directly approximate the target point cloud as a sparse linear combination from the training set, building the point correspondences by the iterative closest point (ICP) method. To accommodate changing noise levels and/or presence of inconsistent occlusions, we further propose a modified sparse regression (MSR) model to account for the large and sparse error built by ICP, with a Laplacian prior. We evaluated our method on both clinical acquired point clouds under consistent conditions and simulated point clouds with inconsistent occlusions. The reconstruction accuracy was evaluated w.r.t. root-mean-squared-error, by comparing the reconstructed surfaces against those from the variational reconstruction method. Results: On clinical point clouds, both the SR and MSR models achieved sub-millimeter accuracy, with mean reconstruction time reduced from 82.23 seconds to 0.52 seconds and 0.94 seconds, respectively. On simulated point cloud with inconsistent occlusions, the MSR model has demonstrated its advantage in achieving consistent performance despite the introduced occlusions. Conclusion: We have developed a real-time and robust surface reconstruction method on point clouds acquired by photogrammetry systems. It serves an important enabling step for real-time motion tracking in radiotherapy. This work is supported in part by NIH grant R01 CA169102-02.

60 APPLIED LIFE SCIENCES↗

The Impact of Circumsolar Diffuse Radiation on the Numerical Computation and Forecasting of DNI

Weather Research and Forecasting model with solar extensions (WRF-Solar) uses the Fast All-sky Radiation Model for Solar applications (FARMS) to predict solar radiation from the forecasted atmospheric gases, aerosols, and clouds. The Beer-Bouguer-Lambert law utilized by FARMS as well as other radiative transfer models assumes Direct Normal Irradiance (DNI) is a narrow beam only covering the sun disk. This assumption is interpreted differently in solar observations by pyrheliometers where the circumsolar diffuse radiation is accounted. This study precisely computes circumsolar diffuse radiation in all-sky conditions using a radiative transfer model based on a parameterization of precomputed cloud transmittance and reflectance. The model is implemented in WRF-Solar to provide day-ahead DNI forecast in the north America. The computation and forecasting of DNI is compared with the Beer-Bouguer-Lambert law to understand the impact of circumsolar diffuse radiation.

aerosols↗

Characterizing Response Versus Scan-Angle for MODIS Reflective Solar Bands Using Deep Convective Clouds

MODIS consists of a cross-track, two-sided scan mirror, whose reflectance is not uniform but is a function of angle of incidence (AOI). This feature, known as response versusscan-angle (RVS), was characterized for all reflective solar bands of both MODIS instruments prior to launch. The RVS characteristic has changed on orbit, which must be tracked precisely over time to ensure the quality of MODIS products. The MODIS characterization support team utilizes the onboard calibrators and the earth view responses from multiple pseudo invariant desert sites to track the RVS changes at different AOIs. The drawback of using deserts is the assumption that these sites are radiometrically stable during the monitoring period. In addition, the 16-day orbit repeat cycle of MODIS allows for only a limited set of AOIs over a given desert. We propose a novel and robust approach of characterizing the MODIS RVS using tropical deep convective clouds (DCC). The method tracks the monthly DCC response at specified sets of AOIs to compute the temporal RVS changes. Initial results have shown that the Aqua-MODIS collection 6 band 1 level 1B radiances show considerable residual RVS dependencies, with long-term drifts up to 2.3 at certain AOIs.

Clouds↗

Enhancing Cloud Cybersecurity: Prescriptive Controls for Operational Technology

This whitepaper provides strategic insights and recommendations into security cloud-based solutions for electric utilities, encompassing operational technology (OT), virtual power plants (VPP), distributed energy resources (DERs), applications, networks, and data storage as they transition to and leverage cloud infrastructure through managed service providers (MSPs) and cloud service providers (CSPs). Principles derived from established frameworks serve as a foundation for best practices across cybersecurity projects and remove the constraints of settling on a single framework. For organizations that prefer not to integrate a specific framework altogether, elements of the proposed approach could be adopted or tailored to best fit defined requirements and expected functionalities. The Cirrus assessment, a utility cloud feasibility tool, and the roadmap it provides serve as a precursor to this paper, which seeks to be a valuable resource for defining next steps following cloud technology integration feasibility appraisal. With its comprehensive approach to adoption, the Cirrus framework offers strategic guidance on responsibly preparing for or deploying a utility cloud solution. The previously published whitepaper, “Use Case-Informed Framework for Utility Cloud Migration,” details the guiding strategy, research, and deployment of cloud solutions within electric and interconnected grid systems. Before implementing the controls suggested in this document, it is recommended that stakeholders complete Cirrus's cloud integration assessment and pair the results with their unique cybersecurity controls to form a comprehensive cloud-based utility cybersecurity plan. The Cirrus outcome will consider a series of future architectures for the grid before and after the energy transition and evaluate the arguments for and against cloud applications for each electric and interconnected grid layer. This document is a companion to the original whitepaper, "Use Case-Informed Framework for Utility Cloud Migration" to further identify and recommend security controls based on Cirrus’s cloud integration assessment output. The following whitepaper outlines the cybersecurity controls that secure cloud-service models pertinent to the electric sector using the predefined categories identify, protect, detect, and respond and recover. The objective is to outline prescriptive security controls based on the type of architecture and data stored in the cloud. The focus includes dissecting the shared responsibility model and elucidating what on-premises Infrastructure as a Service (IaaS), Platform as a Service (PaaS), and Software as a Service (SaaS) entail. A pivotal consideration in this context is allocating responsibility for foundational cybersecurity aspects—having used Cirrus for the cloud integration assessment. The ensuing controls detailed herein also represent a checklist of controls necessary for a secure cloud transition, equipping utilities with the knowledge to navigate this digital transformation with confidence and strategic foresight in a safe and responsible manner.

42 ENGINEERING↗

AIRS Water Vapor and Cloud Products Validate and Explain Recent Negative Global and Tropical OLR Trends Observed by CERES

This paper compares spatial and temporal anomalies and trends of OLR as observed by CERES and computed based on AIRS retrieved surface and atmospheric geophysical parameters over the time period September 2002 February 2010. This time period is marked by a substantial decreasing OLR trend on the order of -0.1 W/m2/yr averaged over the globe. There are very large spatial variations of these trends however, with local values ranging from -2.6 W/m2/yr to +3.0 W/m2/yr in the tropics. The spatial patterns of the AIRS and CERES trends are in essentially perfect agreement with each other, as are the anomaly time series averaged over different spatial regions. This essentially perfect agreement of OLR anomalies and trends derived from observations by two different instruments, in totally independent and different manners, implies that both sets of results must be highly accurate. The agreement of anomalies and trends of OLR as observed by CERES and computed from AIRS derived products also indirectly validates the anomalies and trends of the AIRS derived products as well. We used the anomalies and trends of AIRS derived water vapor and cloud products to explain why global OLR has had a large negative trend over the time period September 2002 through February 2010. Tropical OLR began to decrease significantly at the onset of a strong La Nina in mid-2007. AIRS products show that cloudiness and mid-tropospheric water vapor began to increase in the region 5degN - 20degS latitude extending eastward from 150degW - 30 E longitude at that time, with a corresponding very large drop in OLR in this region. Late 2009 is characterized by a strong El-Nino, with a corresponding change in sign of observed anomalies of mid-tropospheric water vapor, cloud cover, and OLR in this region, as we] l as that of OLR anomalies in the tropics and globally. Monthly mean anomalies of OLR, water vapor and cloud cover over this region are all shown to be highly correlated in time with those of an El Nino anomaly index four months previously. The El Nino index is defined as the SST anomaly averaged over the area 15S to 15N and 160W eastward to 30E. If one excludes the area 5degN - 20degS, 150degW - 30degE from the statistics, the negative area mean tropical OLR trends, as well as OLR trends over the rest of the globe, are substantially

Susskind, Joel↗

Toward GEOS-6, A Global Cloud System Resolving Atmospheric Model

NASA is committed to observing and understanding the weather and climate of our home planet through the use of multi-scale modeling systems and space-based observations. Global climate models have evolved to take advantage of the influx of multi- and many-core computing technologies and the availability of large clusters of multi-core microprocessors. GEOS-6 is a next-generation cloud system resolving atmospheric model that will place NASA at the forefront of scientific exploration of our atmosphere and climate. Model simulations with GEOS-6 will produce a realistic representation of our atmosphere on the scale of typical satellite observations, bringing a visual comprehension of model results to a new level among the climate enthusiasts. In preparation for GEOS-6, the agency's flagship Earth System Modeling Framework [JDl] has been enhanced to support cutting-edge high-resolution global climate and weather simulations. Improvements include a cubed-sphere grid that exposes parallelism; a non-hydrostatic finite volume dynamical core, and algorithm designed for co-processor technologies, among others. GEOS-6 represents a fundamental advancement in the capability of global Earth system models. The ability to directly compare global simulations at the resolution of spaceborne satellite images will lead to algorithm improvements and better utilization of space-based observations within the GOES data assimilation system

Putman, William M.↗

Improvements in the Scalability of the NASA Goddard Multiscale Modeling Framework for Hurricane Climate Studies

Improving our understanding of hurricane inter-annual variability and the impact of climate change (e.g., doubling CO2 and/or global warming) on hurricanes brings both scientific and computational challenges to researchers. As hurricane dynamics involves multiscale interactions among synoptic-scale flows, mesoscale vortices, and small-scale cloud motions, an ideal numerical model suitable for hurricane studies should demonstrate its capabilities in simulating these interactions. The newly-developed multiscale modeling framework (MMF, Tao et al., 2007) and the substantial computing power by the NASA Columbia supercomputer show promise in pursuing the related studies, as the MMF inherits the advantages of two NASA state-of-the-art modeling components: the GEOS4/fvGCM and 2D GCEs. This article focuses on the computational issues and proposes a revised methodology to improve the MMF's performance and scalability. It is shown that this prototype implementation enables 12-fold performance improvements with 364 CPUs, thereby making it more feasible to study hurricane climate.

Shen, Bo-Wen↗

Delaunay walk for fast nearest neighbor: accelerating correspondence matching for ICP

Point set registration algorithms such as Iterative Closest Point (ICP) are commonly utilized in time-constrained environments like robotics. Finding the nearest neighbor of a point in a reference 3D point set is a common operation in ICP and frequently consumes at least 90% of the computation time. We introduce a novel approach to performing the distance-based nearest neighbor step based on Delaunay triangulation. This greedy algorithm finds the nearest neighbor of a query point by traversing the edges of the Delaunay triangulation created from a reference 3D point set. Our work integrates the Delaunay traversal into the correspondences search of ICP and exploits the iterative aspect of ICP by caching previous correspondences to expedite each iteration. An algorithmic analysis and comparison is conducted showing an order of magnitude speedup for both serial and vector processor implementation.

3d point cloud processing↗

Experiments on Electron Cloud Mitigation at PEP-II

The electron cloud effect has been observed at many accelerator facilities. It has been the subject of many workshops and reviews. An electron cloud is formed when low energy photoelectrons released from the vacuum chamber surfaces and ionized residual gas molecules, driven by the beam fields of passing positively charged bunches, impinge on the chamber walls and create secondary emission. It is an important issue for many currently operating facilities and the damping rings of the proposed International Linear Collider (ILC) because beam-cloud interaction can severely impact the machines performance. Systematic studies on the electron cloud effect, and its possible remedies, have been carried out in many laboratories. At SLAC, the effort has been concentrated on theoretical understanding with the aid of computer simulations, and experimental measurements with high intensity positron beams at PEP-II. Computer simulation results have been presented at ECLOUD07 and in an earlier article in this journal. In this article, we present recent results from electron cloud experiments at the positron storage ring of PEP-II. In particular, we discuss the performance of various mitigation techniques.

43 PARTICLE ACCELERATORS↗

Supercomputers, Clouds and Grids powered by BigPanDA for Brain studies

The PanDA WMS - Production and Distributed Analysis Workload Management System - has been developed and used by the ATLAS experiment at the LHC (Large Hadron Collider) for all data processing and analysis challenges. BigPanDA is an extension of the PanDA WMS to run ATLAS and non-ATLAS applications on Leadership Class Facilities and supercomputers, as well as traditional grid and cloud resources. The success of the BigPanDA project has drawn attention from other compute intensive sciences such as biology. In 2017, a pilot project was started between BigPanDA and the Blue Brain Project (BBP) of the Ecole Polytechnique Federal de Lausanne (EPFL) located in Lausanne, Switzerland. This proof of concept project is aimed at demonstrating the efficient application of the BigPanDA system to support the complex scientific workflow of the BBP, which relies on using a mix of desktop, cluster and supercomputers to reconstruct and simulate accurate models of brain tissue.

Computer Science↗

Electron Cloud Simulations in the Fermilab Booster

As part of Fermilab's Proton Improvement Plan-II (PIP-II), the Fermilab Booster synchrotron will operate at a higher intensity, increasing from 4.5×1012 to 6.7×1012 protons per pulse [ppp]. A potential challenge for achieving high-intensity performance arises from rapid transverse instabilities induced by electron cloud (EC). This research presents EC simulations using PyECLOUD, which is an advanced computational tool that incorporates measurements of the secondary electron yield (SEY) from the Booster's combined function magnet material. By systematically varying beam parameters in PyECLOUD, such as bunch structure, bunch length, and intensity, the EC effects on beam stability and overall performance of Booster can be predicted.

43 PARTICLE ACCELERATORS↗

Persistent Homology Metrics Reveal Quantum Fluctuations and Reactive Atoms in Path Integral Dynamics

Nuclear quantum effects (NQEs) are known to impact a number of features associated with chemical reactivity and physicochemical properties, particularly for light atoms and at low temperatures. In the imaginary time path integral formalism, each atom is mapped onto a “ring polymer” whose spread is related to the quantum mechanical uncertainty in the particle’s position, i.e., its thermal wavelength. A number of metrics have previously been used to investigate and characterize this spread and explain effects arising from quantum delocalization, zero-point energy, and tunneling. Many of these shape metrics consider just the instantaneous structure of the ring polymers. However, given the significant interest in methods such as centroid molecular dynamics and ring polymer molecular dynamics that link the molecular dynamics of these ring polymers to real time properties, there exists significant opportunity to exploit metrics that also allow for the study of the fluctuations of the atom delocalization in time. Here we consider the ring polymer delocalization from the perspective of computational topology, specifically persistent homology, which describes the 3-dimensional arrangement of point cloud data, (i.e. atomic positions). We employ the Betti sequence probability distribution to define the ensemble of shapes adopted by the ring polymer. The Wasserstein distances of Betti sequences adjacent in time are used to characterize fluctuations in shape, where the Fourier transform and associated principal components provides added information differentiating atoms with different NQEs based on their dynamic properties. We demonstrate this methodology on two representative systems, a glassy system consisting of two atom types with dramatically different de Broglie thermal wavelengths, and ab initio molecular dynamics simulation of an aqueous 4 M HCl solution where the H-atoms are differentiated based on their participation in proton transfer reactions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Breakups are complicated: an efficient representation of collisional breakup in the superdroplet method

Abstract. A key constraint of particle-based methods for modeling cloud microphysics is the conservation of total particle number, which is required for computational tractability. The process of collisional breakup poses a particular challenge to this framework, as breakup events often produce many droplet fragments of varying sizes, which would require creating new particles in the system. This work introduces a representation of collisional breakup in the so-called “superdroplet” method which conserves the total number of superdroplets in the system. This representation extends an existing stochastic collisional-coalescence scheme and samples from a fragment size distribution in an additional Monte Carlo step. This method is demonstrated in a set of idealized box model and single-column warm-rain simulations. We further discuss the effects of the breakup dynamic and fragment size distribution on the particle size distribution, hydrometeor population, and microphysical process rates. Box model experiments serve to characterize the impacts of properties such as coalescence efficiency and fragmentation function on the relative roles of collisional breakup and coalescence. The results demonstrate that this representation of collisional breakup can produce a stationary particle size distribution, in which breakup and coalescence rates are approximately equal, and that it recovers expected behavior such as a reduction in precipitate-sized particles in the column model. The breakup algorithm presented here contributes to an open-source pythonic implementation of the superdroplet method, PySDM, which will facilitate future research using particle-based microphysics.

de Jong, Emily (ORCID:0000000253104554)↗

A unified parameterization of clouds and turbulence using CLUBB and subcolumns in the Community Atmosphere Model

Most global climate models parameterize separate cloud types using separate parameterizations. This approach has several disadvantages, including obscure interactions between parameterizations and inaccurate triggering of cumulus parameterizations. Alternatively, a unified cloud parameterization uses one equation set to represent all cloud types. Such cloud types include stratiform liquid and ice cloud, shallow convective cloud, and deep convective cloud. Vital to the success of a unified parameterization is a general interface between clouds and microphysics. One such interface involves drawing Monte Carlo samples of subgrid variability of temperature, water vapor, cloud liquid, and cloud ice, and feeding the sample points into a microphysics scheme.This study evaluates a unified cloud parameterization and a Monte Carlo microphysics interface that has been implemented in the Community Atmosphere Model (CAM) version 5.3. Results describing the mean climate and tropical variability from global simulations are presented. The new model shows a degradation in precipitation skill but improvements in short-wave cloud forcing, liquid water path, long-wave cloud forcing, precipitable water, and tropical wave simulation. Also presented are estimations of computational expense and investigation of sensitivity to number of subcolumns.

58 GEOSCIENCES↗

Corkscrews and singularities in fruitflies - Resetting behavior of the circadian eclosion rhythm.

Description of experiments undertaken to define the phase-resetting behavior of the circadian rhythm of pupal eclosion in populations of fruitflies. An attempt is made to determine how and why the resetting response depends on the duration of a standard perturbation as well as on the time at which it is given. Plotting a three-dimensional graph of the measured emergence centroids vs the stimulus variables, the data are found to spiral up around a vertical rotation axis. Using a computer, a smooth surface, called the resetting surface, which approximately fits the helicoidal cloud of data points, is obtained and is shown to be best described as a vertical corkscrew linking together tilted planes. This corkscrew feature of the resetting surface is taken to indicate that there is an isolated perturbation following which there is either no circadian rhythm of emergence in the steady state, or one of unpredictable phase. A hypothesis concerning the clock dynamics underlying the eclosion rhythm is briefly sketched which encompasses the main features of known resetting data using single discrete pulses of any perturbing agent.

Winfree, A. T.↗

Binary-selectable detector holdoff circuit

High-speed switching circuit protects detectors from sudden, extremely-intense backscattered radiation that results from short-range atmospheric dust layers, or low-level clouds, entering laser/radar field of view. Function of circuit is to provide computer-controlled switching of photodiode detector, preamplifier power-supply voltages, in approximately 10 nanoseconds.

Kadrmas, K. A.↗

A parameterization for the absorption of solar radiation in the earth's atmosphere

A method is described for rapidly computing the amount of solar energy absorbed at the earth's surface and in the atmosphere as a function of altitude. The method is a parametric treatment, but the form of the solution and the coefficients involved are based on accurate multiple-scattering computations. In this treatment the absorption varies with the amount and type of clouds, the humidity, the zenith angle of the sun, and the albedo of the earth's surface. Within the stratosphere the absorption also depends on the vertical distribution of ozone. This parameterization for solar radiation is being used in current versions of the global atmospheric circulation model developed at the Goddard Institute for Space Studies.

Lacis, A. A.↗

Sodium D-line emission from Io - Comparison of observed and theoretical line profiles

High-resolution spectra of the D-line profiles have been obtained for Io's sodium emission cloud. These lines, which are produced through resonance scattering of sunlight, are broad and asymmetric and can be used to infer source and dynamical properties of the sodium cloud. In this paper we compare line profile data with theoretical line shapes computed for several assumed initial velocity distributions corresponding to various source mechanisms. We also examine the consequences of source distributions which are nonuniform over the surface of Io. It is found that the experimental data are compatible with escape of sodium atoms from the leading hemisphere of Io and with velocity distributions characteristic of sputtering processes. Thermal escape and simple models of plasma sweeping are found to be incompatible with the observations.

Carlson, R. W.↗