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At least 1,585 records · Page 88

Dramatic changes in mitochondrial subcellular location and morphology accompany activation of the CO 2 concentrating mechanism

Dynamic changes in intracellular ultrastructure can be critical for the ability of organisms to acclimate to environmental conditions. Microalgae, which are responsible for ~50% of global photosynthesis, compartmentalize their Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase (Rubisco) into a specialized structure known as the pyrenoid when the cells experience limiting CO 2 conditions; this compartmentalization is a component of the CO 2 Concentrating Mechanism (CCM), which facilitates photosynthetic CO 2 fixation as environmental levels of inorganic carbon (Ci) decline. Changes in the spatial distribution of mitochondria in green algae have also been observed under CO 2 limitation, although a role for this reorganization in CCM function remains unclear. We used the green microalga Chlamydomonas reinhardtii to monitor changes in mitochondrial position and ultrastructure as cells transition between high CO 2 and Low/Very Low CO 2 (LC/VLC). Upon transferring cells to VLC, the mitochondria move from a central to a peripheral cell location and orient in parallel tubular arrays that extend along the cell’s apico-basal axis. We show that these ultrastructural changes correlate with CCM induction and are regulated by the CCM master regulator CIA5. The apico-basal orientation of the mitochondrial membranes, but not the movement of the mitochondrion to the cell periphery, is dependent on microtubules and the MIRO1 protein, with the latter involved in membrane–microtubule interactions. Furthermore, blocking mitochondrial respiration in VLC-acclimated cells reduces the affinity of the cells for Ci. Overall, our results suggest that mitochondrial repositioning functions in integrating cellular architecture and energetics with CCM activities and invite further exploration of how intracellular architecture can impact fitness under dynamic environmental conditions.

CO2 concentrating mechanism↗

Response of thyroid follicular cells to gamma irradiation compared to proton irradiation: II. The role of connexin 32

The objective of this study was to determine whether connexin 32-type gap junctions contribute to the "contact effect" in follicular thyrocytes and whether the response is influenced by radiation quality. Our previous studies demonstrated that early-passage follicular cultures of Fischer rat thyroid cells express functional connexin 32 gap junctions, with later-passage cultures expressing a truncated nonfunctional form of the protein. This model allowed us to assess the role of connexin 32 in radiation responsiveness without relying solely on chemical manipulation of gap junctions. The survival curves generated after gamma irradiation revealed that early-passage follicular cultures had significantly lower values of alpha (0.04 Gy(-1)) than later-passage cultures (0.11 Gy(-1)) (P < 0.0001, n = 12). As an additional way to determine whether connexin 32 was contributing to the difference in survival, cultures were treated with heptanol, resulting in higher alpha values, with early-passage cultures (0.10 Gy(-1)) nearly equivalent to untreated late-passage cultures (0.11 Gy(-1)) (P > 0.1, n = 9). This strongly suggests that the presence of functional connexin 32-type gap junctions was contributing to radiation resistance in gamma-irradiated thyroid follicles. Survival curves from proton-irradiated cultures had alpha values that were not significantly different whether cells expressed functional connexin 32 (0.10 Gy(-1)), did not express connexin 32 (0.09 Gy(-1)), or were down-regulated (early-passage plus heptanol, 0.09 Gy(-1); late-passage plus heptanol, 0.12 Gy(-1)) (P > 0.1, n = 19). Thus, for proton irradiation, the presence of connexin 32-type gap junctional channels did not influence their radiosensitivity. Collectively, the data support the following conclusions. (1) The lower alpha values from the gamma-ray survival curves of the early-passage cultures suggest greater repair efficiency and/or enhanced resistance to radiation-induced damage, coincident with the expression of connexin 32-type gap junctions. (2) The increased sensitivity of FRTL-5 cells to proton irradiation was independent of their ability to communicate through connexin 32 gap junctions. (3) The fact that the beta components of the survival curves from both gamma rays and proton beams were similar (average 0.022 +/- 0.008 Gy(-2), P > 0.1, n = 39) suggests that at higher doses the loss of viability occurs at a relatively constant rate and is independent of radiation quality and the presence of functional gap junctions.

Non-NASA Center↗

Quinolyl functionalized spiro[fluorene-9,9'-xanthene] host materials with bipolar characteristics for green and red phosphorescent organic light-emitting diodes

Spiro[fluorene-9,9'-xanthene] (SFX) bipolar hosts bearing one, two and three quinolyl substituents, namely SFX-bPy, SFX-DbPy and SFX-TbPy, were designed and synthesized for phosphorescent organic light emitting diodes (PhOLEDs). The successive substitution of quinoline at 2', 2 and 7' positions of SFX results in reduced LUMO energy levels while leaving the HOMO energy levels nearly intact. The impact of quinoline substitution in these SFX-based hosts on PhOLED performance was investigated in detail through green and red model devices. For the green emitting devices, the device based on SFX-bPy host showed better performance (23.6 cd A -1 , 23.4 lm W -1 , 6.3%) due to high triplet energy level ( T 1 ) and balanced carriers-transporting ability. In contrast, for the red PhOLED devices, the device hosted by SFX-DbPy displayed higher performance (15.8 cd A -1 , 16.0 lm W -1 , 9.1%), attributable to the well matched T 1 and separated frontier molecular orbitals. This work thus sheds light on the rational design of SFX-based bipolar hosts for more efficient PhOLEDs.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

LOW X-RAY LUMINOSITY GALAXY CLUSTERS: MAIN GOALS, SAMPLE SELECTION, PHOTOMETRIC AND SPECTROSCOPIC OBSERVATIONS

We present our study of 19 low X-ray luminosity galaxy clusters (L{sub X} ∼ 0.5–45 × 10{sup 43} erg s{sup −1}), selected from the ROSAT Position Sensitive Proportional Counters Pointed Observations and the revised version of Mullis et al. in the redshift range of 0.16–0.7. This is the introductory paper of a series presenting the sample selection, photometric and spectroscopic observations, and data reduction. Photometric data in different passbands were taken for eight galaxy clusters at Las Campanas Observatory; three clusters at Cerro Tololo Interamerican Observatory; and eight clusters at the Gemini Observatory. Spectroscopic data were collected for only four galaxy clusters using Gemini telescopes. Using the photometry, the galaxies were defined based on the star-galaxy separation taking into account photometric parameters. For each galaxy cluster, the catalogs contain the point-spread function and aperture magnitudes of galaxies within the 90% completeness limit. They are used together with structural parameters to study the galaxy morphology and to estimate photometric redshifts. With the spectroscopy, the derived galaxy velocity dispersion of our clusters ranged from 507 km s{sup −1} for [VMF98]022 to 775 km s{sup −1} for [VMF98]097 with signs of substructure. Cluster membership has been extensively discussed taking into account spectroscopic and photometric redshift estimates. In this sense, members are the galaxies within a projected radius of 0.75 Mpc from the X-ray emission peak and with clustercentric velocities smaller than the cluster velocity dispersion or 6000 km s{sup −1}, respectively. These results will be used in forthcoming papers to study, among the main topics, the red cluster sequence, blue cloud and green populations, the galaxy luminosity function, and cluster dynamics.

79 ASTRONOMY AND ASTROPHYSICS↗

Improving Trigger Functions for Convective Parameterization Schemes Using GOAmazon Observations

Using observations from the Green Ocean Amazon (GOAmazon) field campaign, this study aims to improve trigger functions of convection schemes. Results show that the CAPE generation rate (dCAPE)-type triggers are the first tier and that the Bechtold and heated condensation framework (HCF) triggers are a distant second tier. The composite analysis reveals that the undilute dCAPE trigger underpredicts convection when there is bottom-heavy upward motion but overpredicts convection with low-level downward and upper-level upward motions. The empirical orthogonal function (EOF) analysis on vertical velocity shows that EOF1 (62.65%) exhibits upward motion throughout the troposphere and that EOF2 (28.05%) has lower-level upward motion and upper-level downward motion. Both of them have close relationships with precipitation, indicating the role of vertical velocity in triggering convection. The skill sensitivity analysis shows that the inclusion of 700-hPa upward motion significantly enhances the undilute dCAPE trigger. For the dilute dCAPE trigger, entrainment rate and dCAPE threshold are optimized to improve it. Opposite to dCAPE-type triggers, the Bechtold trigger overemphasizes the low-level vertical velocity and underpredicts the mature and decaying phases of long-lasting convection events. The HCF trigger overemphasizes the near-surface moist static energy and overlooks the vertical velocity. The performance of dCAPE-type triggers on various convective systems over the Amazon region is examined. The eastward-propagating systems are best represented, with only a few underpredictions in their decaying stages. The weak locally occurring systems and marginal phases of westward-propagating systems are easy to underpredict. The revised dCAPE-type triggers perform better on different convection systems and the diurnal cycle of convection.

54 ENVIRONMENTAL SCIENCES↗

Interrogating biomineralization one amino acid at a time: amplification of mutational effects in protein-aided titania morphogenesis through reaction-diffusion control

To emulate the control that biomineralizing organisms exert over reactant transport, we construct a countercurrent reaction-diffusion chamber in which an agarose hydrogel regulates the fluxes of inorganic precursor and precipitating solid-binding protein. Furthermore, we show that the morphology of the bioprecipitated titania can be changed from monolithic to interconnected particle networks and dispersed nanoparticles either by decreasing reaction time or by increasing agarose weight percentage at constant precursor and protein concentrations. More strikingly, protein variants with one or two substitutions in their metal oxide-binding domain yield unique peripheral morphologies (needles, threads, plates, and peapods) with distinct crystallography and photocatalytic activity. Our results suggest that diffusional control can magnify otherwise subtle mutational effects in biomineralizing proteins and provide a path for the green synthesis of morphologically and functionally diverse inorganic materials.

59 BASIC BIOLOGICAL SCIENCES↗

Phototaxis in a wild isolate of the cyanobacterium Synechococcus elongatus

Many cyanobacteria, which use light as an energy source via photosynthesis, have evolved the ability to guide their movement toward or away from a light source. This process, termed “phototaxis,” enables organisms to localize in optimal light environments for improved growth and fitness. Mechanisms of phototaxis have been studied in the coccoid cyanobacterium Synechocystis sp. strain PCC 6803, but the rod-shaped Synechococcus elongatus PCC 7942, studied for circadian rhythms and metabolic engineering, has no phototactic motility. In this study we report a recent environmental isolate of S. elongatus , the strain UTEX 3055, whose genome is 98.5% identical to that of PCC 7942 but which is motile and phototactic. A six-gene operon encoding chemotaxis-like proteins was confirmed to be involved in phototaxis. Environmental light signals are perceived by a cyanobacteriochrome, PixJ Se (Synpcc7942_0858), which carries five GAF domains that are responsive to blue/green light and resemble those of PixJ from Synechocystis . Furthermore, plate-based phototaxis assays indicate that UTEX 3055 uses PixJ Se to sense blue and green light. Mutation of conserved functional cysteine residues in different GAF domains indicates that PixJ Se controls both positive and negative phototaxis, in contrast to the multiple proteins that are employed for implementing bidirectional phototaxis in Synechocystis .

59 BASIC BIOLOGICAL SCIENCES↗

Experimental and synthetic measurements of polarized synchrotron emission from runaway electrons in Alcator C-Mod

This paper presents the first experimental analysis of polarized synchrotron emission from relativistic runaway electrons (REs) in a tokamak plasma. Importantly, we show that the polarization information of synchrotron radiation can be used to diagnose spatially-localized RE pitch angle distributions. Synchrotron-producing REs were generated during low density, Ohmic, diverted plasma discharges in the Alcator C-Mod tokamak. The ten-channel motional Stark effect diagnostic was used to measure spatial profiles of the polarization angle θ pol and the fraction f pol of detected light that was linearly-polarized. Spatial transitions in θ pol of 90° —from horizontal to vertical polarization and vice versa—are observed in experimental data and are well-explained by the gyro-motion of REs and high directionality of synchrotron radiation. Here polarized synchrotron emission is modeled with the synthetic diagnostic Soft; its output Green's (or detector response) functions reveal a critical RE pitch angle at which θ pol flips by 90° and f pol is minimal. Using Soft, we determine the dominant RE pitch angle which reproduces measured θ pol and f pol values. The spatiotemporal evolutions of θ pol and f pol are explored in detail for one C-Mod discharge. For channels viewing REs near the magnetic axis and flux surfaces q = 1 and 4/3, disagreements between synthetic and experimental signals suggest that the sawtooth instability may be influencing RE dynamics. Furthermore, other sources of pitch angle scattering, not considered in this analysis, could help explain discrepancies between simulation and experiment.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community

The Asian citrus psyllid ( Diaphorina citri Kuwayama) is the insect vector of the bacterium Candidatus Liberibacter asiaticus (CLas), the pathogen associated with citrus Huanglongbing (HLB, citrus greening). HLB threatens citrus production worldwide. Suppression or reduction of the insect vector using chemical insecticides has been the primary method to inhibit the spread of citrus greening disease. Accurate structural and functional annotation of the Asian citrus psyllid genome, as well as a clear understanding of the interactions between the insect and CLas, are required for development of new molecular-based HLB control methods. A draft assembly of the D. citri genome has been generated and annotated with automated pipelines. However, knowledge transfer from well-curated reference genomes such as that of Drosophila melanogaster to newly sequenced ones is challenging due to the complexity and diversity of insect genomes. To identify and improve gene models as potential targets for pest control, we manually curated several gene families with a focus on genes that have key functional roles in D. citri biology and CLas interactions. This community effort produced 530 manually curated gene models across developmental, physiological, RNAi regulatory and immunity-related pathways. As previously shown in the pea aphid, RNAi machinery genes putatively involved in the microRNA pathway have been specifically duplicated. A comprehensive transcriptome enabled us to identify a number of gene families that are either missing or misassembled in the draft genome. In order to develop biocuration as a training experience, we included undergraduate and graduate students from multiple institutions, as well as experienced annotators from the insect genomics research community. The resulting gene set (OGS v1.0) combines both automatically predicted and manually curated gene models.

59 BASIC BIOLOGICAL SCIENCES↗

Experimental and synthetic measurements of polarized synchrotron emission from runaway electrons in Alcator C-Mod

This paper presents the first experimental analysis of polarized synchrotron emission from relativistic runaway electrons (REs) in a tokamak plasma. Importantly, we show that the polarization information of synchrotron radiation can be used to diagnose spatially-localized RE pitch angle distributions. Synchrotron-producing REs were generated during low density, Ohmic, diverted plasma discharges in the Alcator C-Mod tokamak. The ten-channel Motional Stark Effect diagnostic was used to measure spatial profiles of the polarization angle and the fraction of detected light that was linearly-polarized. Spatial transitions in the polarization angle of 90 degrees---from horizontal to vertical polarization and vice versa---are observed in experimental data and are well-explained by the gyro-motion of REs and high directionality of synchrotron radiation. Polarized synchrotron emission is modeled with the synthetic diagnostic SOFT; its output Green's (or detector response) functions reveal a critical RE pitch angle at which the polarization angle flips by 90 degrees and the polarization fraction is minimal. Using SOFT, we determine the dominant RE pitch angle which reproduces measured polarization angle and fraction values. The spatiotemporal evolutions of the polarization angle and fraction are explored in detail for one C-Mod discharge. For channels viewing REs near the magnetic axis and flux surfaces q = 1 and 4/3, disagreements between synthetic and experimental signals suggest that the sawtooth instability may be influencing RE dynamics. Furthermore, other sources of pitch angle scattering, not considered in this analysis, could help explain discrepancies between simulation and experiment.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Application of boundary integral method to elastic analysis of V-notched beams

A semidirect boundary integral method, using Airy's stress function and its derivatives in Green's boundary integral formula, is used to obtain an accurate numerical solution for elastic stress and strain fields in V-notched beams in pure bending. The proper choice of nodal spacing on the boundary is shown to be necessary to achieve an accurate stress field in the vicinity of the tip of the notch. Excellent agreement is obtained with the results of the collocation method of solution.

Rzasnicki, W.↗

Factors that affect reliability of nondestructive detection of flaws in structural ceramics

The factors that affect reliability of nondestructive detection of flaws in structural ceramics by microfocus radiography and scanning laser acoustic microscopy (SLAM) were investigated. Reliability of void detection in silicon nitride and silicon carbide by microfocus X-rays was affected by photon energy level, material chemistry in the immediate vicinity of the void, and the presence of loose powder aggregates inside the void cavity. The sensitivity of SLAM to voids was affected by material microstructure, the level of porosity, and the condition of the specimen surfaces. Statistical results are presented in the form of probability of detection as a function of void diameter for green compacts and sintered materials.

Klima, S. J.↗

Identification and preliminary characterization of conserved uncharacterized proteins from Chlamydomonas reinhardtii , Arabidopsis thaliana , and Setaria viridis

Abstract The rapid accumulation of sequenced plant genomes in the past decade has outpaced the still difficult problem of genome‐wide protein‐coding gene annotation. A substantial fraction of protein‐coding genes in all plant genomes are poorly annotated or unannotated and remain functionally uncharacterized. We identified unannotated proteins in three model organisms representing distinct branches of the green lineage (Viridiplantae): Arabidopsis thaliana (eudicot), Setaria viridis (monocot), and Chlamydomonas reinhardtii (Chlorophyte alga). Using similarity searching, we identified a subset of unannotated proteins that were conserved between these species and defined them as Deep Green proteins. Bioinformatic, genomic, and structural predictions were performed to begin classifying Deep Green genes and proteins. Compared to whole proteomes for each species, the Deep Green set was enriched for proteins with predicted chloroplast targeting signals predictive of photosynthetic or plastid functions, a result that was consistent with enrichment for daylight phase diurnal expression patterning. Structural predictions using AlphaFold and comparisons to known structures showed that a significant proportion of Deep Green proteins may possess novel folds. Though only available for three organisms, the Deep Green genes and proteins provide a starting resource of high‐value targets for further investigation of potentially new protein structures and functions conserved across the green lineage.

59 BASIC BIOLOGICAL SCIENCES↗

Surface reflectance measurements in the UV from an airborne platform. I

The reflectance of naturally occurring surfaces is measured from a twin engine Cessna 402B aircraft both spectrally (0.29-0.40 micron) with a compact double monochromator and broadband (0.29-1.2 micron) with a UV enhanced photodiode. The measurement system, which is computer controlled and electrically isolated from the aircraft, consists of upward and downward looking hemispheric diffusers, filters, a rotating 90 deg mirror, a focusing lens, and a double monochromator/PMT or the UV photodiode. Measurements are taken at several altitudes enabling the empirical determination of backscatter and attenuation effects on the reflectance. The results are presented for pine forest canopy, green farmland, open ocean, and brown farmland as a function of wavelength and altitude.

Doda, D. D.↗

Exploring Micro-Environmental Conditions of Urban Agrivoltaics: Advancing Sustainable Green Spaces and Agriculture in Temperate Cities

Agrivoltaics, the integrated land use combining renewable energy production and agriculture, can potentially address key challenges faced by urban communities, including limited access to vacant land, fresh produce, and electricity. However, urban agrivoltaics has rarely been considered a viable solution, primarily due to a lack of experimental systems demonstrating the functionality of urban food production or green spaces alongside solar energy production. To evaluate the potential of solar photovoltaics to help mitigate heat stress on urban agriculture and green spaces in a temperate climate, we examined the microclimatic changes introduced by an urban agrivoltaics system (UrAV) when combined with vegetable crops and turfgrass, respectively. Accordingly, we installed an experimental setup instrumented with environmental sensors to compare full-sun conditions with those of an agrivoltaics system designed for urban environments. We found minimal differences for both land cover types between the control and agrivoltaics sites in air and soil temperature. However, during periods of intensified summer heat, temperatures beneath the panels cooled due to reductions in wind speed and relative humidity, which impeded the movement of hot, moist air and reduced reference evapotranspiration. Further, soil moisture in UrAV was highly spatially heterogeneous, influenced by the layout of the photovoltaic panels and their support structure, which redistributed rainfall and controlled where solar radiation could penetrate and drive evapotranspiration. Overall, our results suggest that PV-induced environmental changes in temperate climates are compatible with cultivating turfgrass or appropriate crops. These findings can help planners and designers integrate agrivoltaics into community gardens, farms, and green spaces in temperate cities.

14 SOLAR ENERGY↗

Spectral properties /0.04 to 0.75 microns/ of soils exposed at the Viking 1 landing site

The bidirectional reflectance and photometric function (Hapke, 1981) was determined for seven patches of soil located near the Viking Lander 1 spacecraft. The soil photometric function has a prominent opposition effect in addition to a phase function that is strongly backscattering. The ratio of reflectances at a 1 deg phase angle to that at a 10 deg phase angle averages 1.25, 1.24, and 1.19 for blue, green, and red wavelengths respectively. The photometric function has a wavelength dependence, which causes color ratios to vary by up to 33% as a function of phase angle. Estimates of soil reflectance at a 5 deg phase angle averaged over the blue and green passbands of the Viking Lander cameras are 0.11 and 0.17, respectively, while estimates over the red channel range from 0.30 to 0.39. Brightness and color variations within the soil can be correlated with particle size, finer-grained soil being brighter and redder than coarser-grained soil. Lander soils, homogeneous in nature, are typical of brighter soils covering a large portion of the Martian surface.

Guinness, E. A.↗

The auroral green line in Perseid spectra near sunspot maximum

Thirty-one spectra photographed during the Perseid showers of 1969 and 1970 are found to exhibit greater ionization and stronger, more frequent appearance of the forbidden oxygen line at 5577 A than Perseid spectra obtained with the same instrument in 1961. Data from 13 Perseid showers indicate a relationship between the frequency of occurrence of the oxygen line and solar activity. In 1969-70, near sunspot maximum, the strength of this auroral green line is greatest near shower maximum, as though the nature of the meteoroids were a function of their distance from the core of the stream, or, alternatively, the strength of the green line were a function of the altitude of the radiant.

Russell, J. A.↗