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A unifying Bayesian framework for merging X-ray diffraction data

Novel X-ray methods are transforming the study of the functional dynamics of biomolecules. Key to this revolution is detection of often subtle conformational changes from diffraction data. Diffraction data contain patterns of bright spots known as reflections. To compute the electron density of a molecule, the intensity of each reflection must be estimated, and redundant observations reduced to consensus intensities. Systematic effects, however, lead to the measurement of equivalent reflections on different scales, corrupting observation of changes in electron density. Here, we present a modern Bayesian solution to this problem, which uses deep learning and variational inference to simultaneously rescale and merge reflection observations. We successfully apply this method to monochromatic and polychromatic single-crystal diffraction data, as well as serial femtosecond crystallography data. We find that this approach is applicable to the analysis of many types of diffraction experiments, while accurately and sensitively detecting subtle dynamics and anomalous scattering.

59 BASIC BIOLOGICAL SCIENCES↗

Analysis of field measurements of carbon dioxide and water vapor fluxes

Analysis of the field measurements of carbon dioxide and water vapor fluxes is discussed. These data were examined in conjunction with reflectance obtained from helicopter mounted Modular Multiband Radiometer. These measurements are representative of the canopy scale (10 to 100 m)(exp 2) and provide a good basis for investigating the hypotheses/relationship potentially useful in remote sensing applications. All the micrometeorological data collected during FIFE-89 were processed and fluxes of CO2, water vapor, and sensible heat were calculated. Soil CO2 fluxes were also estimated. Employing these soil CO2 flux values, in conjunction with micrometeorological measurements, canopy photosynthesis is being estimated. A biochemical model of leaf photosynthesis was adapted to the prairie vegetation. The modeled leaf photosynthesis rates were scaled up to the canopy level. This model and a multiplicative stomatal conductance model are also used to calculate canopy conductance.

Verma, Shashi B.↗

Optical Strain Measurement of an Inflated Cylinder using Photogrammetry with Application to Scientific Balloons

A study is presented using photogrammetry to measure the biaxial strain in an inflated cylinder. Two cylinders constructed from polyethylene and each approximately 222 mm in diameter and 930 mm in length were studied. The first had a 0.038 mm wall thickness while the second had a 0.02 mm wall thickness. The cylinders were inflated to a maximum pressure of 1379 Pa. The strain was determined from data collected from 60 retro-reflective targets arranged in a 12 x 5 grid. The uncertainty of the measurement system was determined to be 0.08, 0.04 and 0.06 mm in the x, y, and z directions respectively. The hoop and meridional strains determined from displacement data were compared to values obtained from a finite element analysis of a related proxy problem. The predicted hoop strains showed good agreement over the entire range of pressures while the meridional strains showed good agreement at the lower pressures.

Blandino, Joseph R.↗

Climatology of Global Precipitation Measurement Mission Precipitation Regimes and Implications for Global Estimates of Vertical Winds

The Global Precipitation Measurement (GPM) mission Validation Network (VN) framework leverages over 118 ground-based polarimetric Doppler radars to validate a large subset of precipitation measurements and retrievals from the GPM Dual-frequency Precipitation Radar (DPR). Recently, GPM DPR reflectivity profiles within the VN have been classified according to their convective regime using unsupervised machine learning techniques. The archetypal regimes are stratiform, convective, mixed stratiform-convective (e.g., transition regions), and “other” (e.g., peripheral regions of light precipitation). Subcategories within these four primary regimes vary according to the characteristic depth of included reflectivity profiles, resulting in 12 main GPM DPR precipitation profile categories. Polarimetry of ground-based Doppler radars in the VN offers additional insights into the types of precipitation, while pairs of radars positioned near each other enable retrieval of vertical winds via dual-Doppler analysis. Geometrically matched to the DPR reflectivity profiles in the GPM VN, these ground-based data and retrievals contribute more detailed characterization of the distinct kinematic and microphysical structures associated with each of the 12 DPR precipitation regimes. DPR reflectivity profiles linked with wind in the VN are restricted to GPM overpasses of proximal radar pairs that allow dual-Doppler analysis. Although a limited subset of DPR profiles in the VN are matched with vertical motion, agreement between the reflectivity structures paired with wind data and those of the greater DPR dataset in the VN suggest that estimates of vertical motion may be inferred in regions without ground-based measurements. We present a climatology of the 12 convective regimes identified within the DPR VN dataset as well as early efforts to estimate the kinematic and microphysical structures of precipitation profiles within the greater GPM DPR dataset by applying machine learning techniques. Precipitation data paired with global estimates of vertical winds from these efforts offer early insight to and support upcoming missions to retrieve convective mass flux, including the Investigation of Convective Updrafts (INCUS) in the Tropics and the global Atmosphere Observing System (AOS).

Precipitation↗

The 27-28 October 1986 FIRE IFO Cirrus Case Study: Cirrus Parameter Relationships Derived from Satellite and Lidar Data

Cirrus cloud radiative and physical characteristics are determined using a combination of ground based, aircraft, and satellite measurements taken as part of the First ISCCP Region Experiment (FIRE) cirrus intensive field observations (IFO) during October and November 1986. Lidar backscatter data are used with rawinsonde data to define cloud base, center and top heights and the corresponding temperatures. Coincident GOES-4 4-km visible (0.65 micrometer) and 8-km infrared window (11.5 micrometer) radiances are analyzed to determine cloud emittances and reflectances. Infrared optical depth is computed from the emittance results. Visible optical depth is derived from reflectance using a theoretical ice crystal scattering model and an empirical bidirectional reflectance model. No clouds with visible optical depths greater than 5 or infrared optical depths less than 0.1 were used in the analysis. Average cloud thickness ranged from 0.5 km to 8.0 km for the 71 scenes. Mean vertical beam emittances derived from cloud-center temperatures were 062 for all scenes compared to 0.33 for the case study (27-28 October) reflecting the thinner clouds observed for the latter scenes. Relationships between cloud emittance , extinction coefficients, and temperature for the case study are very similar to those derived from earlier surface-based studies. The thicker clouds seen during the other IFO days yield different results. Emittances derived using cloud-top temperature wer ratioed to those determined from cloud-center temperature. A nearly linear relationship between these ratios and cloud-center temperature holds promise for determining actual cloud-top temperature and cloud thickness from visible and infrared radiance pairs. The mean ratio of the visible scattering optical depth to the infrared absorption optical depth was 2.13 for these data. This scattering efficiency ratio shows a significant dependence on cloud temperature. Values of mean scattering efficiency as high as 2.6 suggest the presence of small ice particles at temperatures below 230 K. the parameterization of visible reflectance in terms of cloud optical depth and clear sky reflectance shows promise as a simplified method for interpreting visible satellite data reflected from cirrus clouds. Large uncertainties in the optical parameters due to cloud reflectance anisotropy and shading were found by analyzing data for various solar zenith angles and for simultaneous advanced very high resolution radiometer (AVHRR) data. Inhomogeneities in the cloud fields result in uneven cloud shading that apparently causes the occurrence of anomalously dark, cloud pixels in the GOES data. These shading effects complicate the interpretation of the satellite data. The results highlight the need for additional study or cirrus cloud scattering processes and remote sensing techniques.

Minnis, Patrick↗

Computation and use of the reflectivity at 3.75 micrometers from AVHRR thermal channels

Global study of land surface properties uses AVHRR channels 1 and 2, but channel 3 may be of interest, although its use requires preprocessing. It consists of both a reflective part and an emissive part, the former can be derived from T3, T4 and T5. Since the water vapor affects channel 3, its content is retrieved from the channel 4 and 5 using the split window technique. A formula of reflective part retrieval at 3.75 micrometers is tested in the case of sunglint observations where the emissivities of channels 4 and 5 can be set to the unity. The formula is adapted and validated to land surface using the FIFE-87 data set. Preliminary applications of the reflectance at 3.75 micrometers to the studies of surface properties retrieval, aerosol retrieval over land, and desertic aerosol retrieval, are addressed.

Roger, J. C.↗

Bidirectional reflectance, leaf optical and physiological properties of prairie vegetation

A modular multiband radiometer is used to measure reflected radiation from the vegetative surface of a prairie. The data are compared to estimates of incoming radiation by measuring the reflection from a molded halon panel, and the bidirectional reflectance factors are measured at seven view-zenith angles and various incidence angles. The canopy-reflectance results are compared to leaf-optical and other vegetative physiological properties, and a direct relationship is reported.

Walter-Shea, E. A.↗

High-Rate Data-Capture for an Airborne Lidar System

A high-rate data system was required to capture the data for an airborne lidar system. A data system was developed that achieved up to 22 million (64-bit) events per second sustained data rate (1408 million bits per second), as well as short bursts (less than 4 s) at higher rates. All hardware used for the system was off the shelf, but carefully selected to achieve these rates. The system was used to capture laser fire, single-photon detection, and GPS data for the Slope Imaging Multi-polarization Photo-counting Lidar (SIMPL). However, the system has applications for other laser altimeter systems (waveform-recording), mass spectroscopy, xray radiometry imaging, high-background- rate ranging lidar, and other similar areas where very high-speed data capture is needed. The data capture software was used for the SIMPL instrument that employs a micropulse, single-photon ranging measurement approach and has 16 data channels. The detected single photons are from two sources those reflected from the target and solar background photons. The instrument is non-gated, so background photons are acquired for a range window of 13 km and can comprise many times the number of target photons. The highest background rate occurs when the atmosphere is clear, the Sun is high, and the target is a highly reflective surface such as snow. Under these conditions, the total data rate for the 16 channels combined is expected to be approximately 22 million events per second. For each photon detection event, the data capture software reads the relative time of receipt, with respect to a one-per-second absolute time pulse from a GPS receiver, from an event timer card with 0.1-ns precision, and records that information to a RAID (Redundant Array of Independent Disks) storage device. The relative time of laser pulse firings must also be read and recorded with the same precision. Each of the four event timer cards handles the throughput from four of the channels. For each detection event, a flag is recorded that indicates the source channel. To accommodate the expected maximum count rate and also handle the other extreme of very low rates occurring during nighttime operations, the software requests a set amount of data from each of the event timer cards and buffers the data. The software notes if any of the cards did not return all the data requested and then accommodates that lower rate. The data is buffered to minimize the I/O overhead of writing the data to storage. Care was taken to optimize the reads from the cards, the speed of the I/O bus, and RAID configuration.

Valett, Susan↗

Nested rain cell contour statistics derived from radar measurements in the mid-Atlantic coast of the United States

During a period spanning more than 5 years, a series of low elevation rain radar measurements encompassing 17 rain days were systematically executed in the mid-Atlantic coast of the United States. Drop size distribution measurements with a nearby disdrometer were also acquired during the same rain days. The drop size data were utilized to convert the radar reflectivity factors to estimated rain rates for the respective rain days of operation. Applying developed algorithms to the radar and disdrometer data, 'core' values of rain intensities and nested families of rain rate isopleths enveloping them were identified and their equi-circle diameters were statistically analyzed.

Goldhirsh, Julius↗

Comparison of preliminary results from Airborne Aster Simulator (AAS) with TIMS data

The Japanese Advanced Spaceborne Thermal Emission and Reflection radiometer (ASTER), being developed for a NASA EOS-A satellite, will have 3 VNIR, 6 SWIR, and 5 TIR (8-12 micron) bands. An Airborne ASTER Simulator (AAS) was developed for Japan Resources Observation System Organization (JAROS) by the Geophysical Environmental Research Group (GER) Corp. to research surface temperature and emission features in the MWIR/TIR, to simulate ASTER's TIR bands, and to study further possibility of MWIR/TIR bands. ASTER Simulator has 1 VNIR, 3 MWIR (3-5 microns), and 20 (currently 24) TIR bands. Data was collected over 3 sites - Cuprite, Nevada; Long Valley/Mono Lake, California; and Death Valley, California - with simultaneous ground truth measurements. Preliminary data collected by AAS for Cuprite, Nevada is presented and AAS data is compared with Thermal Infrared Multispectral Scanner (TIMS) data.

Kannari, Yoshiaki↗

Snorri Version 1.0

The software decomposes n-component time-series data into persistence vectors and provide visualizations of various summaries of this information. Persistence vectors are a type of vector, based on multidimensional persistent homology theory, which have magnitudes and directions that reflect dominant trends in the multi-component data. The software is a collection of MATLAB scripts, and thus MATLAB runs the scripts. The master script that calls other scripts is called Snorri. The purpose is thus analysis of time-series data to extract dominant trends or events and to classify the type of event. The software produces characteristic vectors (an average of the persistence vectors), which can have directions that reflect the overall dominant trend in a time-series data set. The MATLAB scripts have been partially converted to the PYTHON language and no do not have the full functionality of the MATLAB and are not fully tested; the python scripts are to be covered under this copyright assertion. Two versions of the PYTHON scripts are included, called: mph25.py and mph38.py, each with their own main.py file.

Callor, Nickolas↗

The 27-28 October 1986 FIRE IFO Cirrus Case Study: Cirrus Parameter Relationships Derived from Satellite and Lidar Data

Cirrus cloud radiative and physical characteristics are determined using a combination of ground-based, aircraft, and satellite measurements taken as part of the FIRE Cirrus Intensive Field Observations (IFO) during October and November 1986. Lidar backscatter data are used with rawinsonde data to define cloud base, center, and top heights and the corresponding temperatures. Coincident GOES 4-km visible (0.65 micro-m) and 8-km infrared window (11.5 micro-m) radiances are analyzed to determine cloud emittances and reflectances. Infrared optical depth is computed from the emittance results. Visible optical depth is derived from reflectance using a theoretical ice crystal scattering model and an empirical bidirectional reflectance model. No clouds with visible optical depths greater than 5 or infrared optical depths less than 0.1 were used in the analysis. Average cloud thickness ranged from 0.5 km to 8.0 km for the 71 scenes. Mean vertical beam emittances derived from cloud-center temperatures were 0.62 for all scenes compared to 0.33 for the case study (27-28 October) reflecting the thinner clouds observed for the latter scenes. Relationships between cloud emittance, extinction coefficients, and temperature for the case study are very similar to those derived from earlier surface- based studies. The thicker clouds seen during the other IFO days yield different results. Emittances derived using cloud-top temperature were ratioed to those determined from cloud-center temperature. A nearly linear relationship between these ratios and cloud-center temperature holds promise for determining actual cloud-top temperatures and cloud thicknesses from visible and infrared radiance pairs. The mean ratio of the visible scattering optical depth to the infrared absorption optical depth was 2.13 for these data. This scattering efficiency ratio shows a significant dependence on cloud temperature. Values of mean scattering efficiency as high as 2.6 suggest the presence of small ice particles at temperatures below 230 K. The parameterization of visible reflectance in terms of cloud optical depth and clear-sky reflectance shows promise as a simplified method for interpreting visible satellite data reflected from cirrus clouds. Large uncertainties in the optical parameters due to cloud reflectance anisotropy and shading were found by analyzing data for various solar zenith angles and for simultaneous AVHRR data. Inhomogeneities in the cloud fields result in uneven cloud shading that apparently causes the occurrence of anomalously dark, cloudy pixels in the GOES data. These shading effects complicate the interpretation of the satellite data. The results highlight the need for additional study of cirrus cloud scattering processes and remote sensing techniques.

Minnis, Patrick↗

Custom surface reflectance, shade mask, and equivalent water thickness maps for the Colorado Headwaters Ecological Spectroscopy Study (2025)

This dataset contains land surface reflectance estimates and additional derived products generated from NEON Imaging Spectrometer (NIS) data collected in the Upper Gunnison river basin during June and July of 2025. Data was collected over three domains: the Upper East River (CRBU), Almont Triangle (ALMO), and the Upper Taylor Basin (UPTA). These products were derived from radiance and LiDAR data collected by the NEON Airborne Observation Platform (AOP) campaign funded by the Colorado Headwaters Ecological Spectroscopy Study (CHESS) (doi:10.15485/3017965). Products include per-pixel surface reflectance (rfl) and reflectance uncertainty (rfl_unc), observational data (obs), canopy equivalent water thickness (ewt), and shade masks. Atmospheric correction was performed per flightline using the ISOFIT (Imaging Spectrometer Optimal FITting) optimal estimation framework to estimate surface reflectance and the associated per-band reflectance uncertainty. Reflectance retrievals achieved a mean absolute error of 1.5% across diverse validation surfaces (see validation report.pdf). Equivalent water thickness was calculated from surface reflectance using the Beer–Lambert absorption of liquid water. Shade masks were generated based on the geometry between the sun angle, ground surface, and sensor at the time of flight. Data products are provided per-flightline and as mosaics for each domain. Flightline data products are provided as ENVI-formatted binary files (rfl, rfl_unc, ewt) and GeoTIFFs (shade). Reflectance and uncertainty mosaics are provided as tiled NetCDFs, while all other mosaicked products are provided as cloud-optimized GeoTIFFs. These formats are supported by common geospatial software (e.g., QGIS, ArcGIS, ENVI) and programmatic libraries in Python (e.g., rasterio, xarray, spectral, netCDF4) and R (e.g., terra, ncdf4). Processing workflows were designed to be equivalent to those used to generate the 2018 CHESS campaign airborne imaging spectroscopy data products (doi:10.15485/3013527). All outputs were co-registered to a common spatial grid to support time series analyses. CHESS Project Description: The Colorado Headwaters Ecological Spectroscopy Study (CHESS) comprised a multi-week airborne remote sensing and field observation campaign in the Upper Gunnison Basin, Colorado, conducted in June and July of 2025. Airborne remote sensing was conducted by the National Ecological Observatory Network Airborne Observation Platform (NEON AOP), concurrent with a field campaign run by the Rocky Mountain Biological Laboratory (RMBL), the Lawrence Berkeley National Laboratory (LBNL) and SLAC National Accelerator Laboratory Watershed Function Science Focus Area (SFA), and NASA-JPL (Jet Propulsion Laboratory) Earth Surface Mineral Dust Source Investigation (EMIT) program. Between June 10 and July 18, 2025, the NEON AOP flight team collected high-resolution aerial imaging spectroscopy and Light Detection and Ranging (LiDAR) data over three domains: the Upper East River (CRBU), Almont Triangle (ALMO), and the Upper Taylor Basin (UPTA). In coordination with the flights, a field campaign acquired ground-truth observations, including observations of vegetation composition, foliar traits, forest demography, and subsurface properties in 18 core sampling areas within the domains. Additional surface water observations were taken at over 380 point locations. All CHESS campaign datasets can be found within the CHESS ESS-DIVE data portal: https://data.ess-dive.lbl.gov/portals/chess. Funding Acknowledgment: Data acquisition was performed under a grant from the National Aeronautics and Space Administration (80NSSC24K1005). Computational research was carried out at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration (80NM0018D0004) and was funded by EMIT Extended Mission Phase E Science.

2018 NEON and 2025 CHESS Campaigns↗

Effects of solar angle on reflectance from wetland vegetation

A hand-held radiometer was used to gather spectral data from wetland vegetation canopies to determine the effects of solar angle on reflectance. The reflectance of leafless and gramineous canopies was highly dependent on solar angle, while broadleaf canopy reflectance was not. The solar angle effects are quantified, and a method to compensate for differences in solar angle at the time of collection of spectral data is described. It was found that adjusting spectral data for solar angle effects substantially improved remote sensing estimates of biomass.

Gross, M. F.↗

Crystal motion measurement by means of satellite techniques

A system for monitoring precursory crustal motions is presented. It involves a set of automated corner reflector stations tracked by means of a laser operating in the Geopause satellite. It is possible to range some three times during every Geopause pass to each of the sites in such an ensemble, weather permitting. One centimeter range data gathered during a quarter of a year can yield position component accuracies of the order of a couple of centimeters. A laser beam of a tenth of a milliradian in diameter would, illuminate a single station in such an array. A broader beam would generate reflections from several sites, yielding overlapping data. A chain or pattern of such overlapping regions can strengthen the solution for site positions. Pressure, temperature and humidity gauges can provide refraction correction data. Turnaround transponders interrogated by the Geopause radio tracking system can furnish corresponding data in excessively cloudy regions.

Siry, J. W.↗

BOREAS TE-10 Leaf Optical Properties

The Boreal Ecosystem-Atmospheric Study (BOREAS) TE-10 (Terrestrial Ecology) team collected several data sets in support of its efforts to characterize and interpret information on the reflectance, transmittance, gas exchange, oxygen evolution, and biochemical properties of boreal vegetation. This data set describes the spectral optical properties (reflectance and transmittance) of boreal forest conifers and broadleaf tree leaves as measured with a Spectron Engineering SE590 spectroradiometer at the Southern Study Area Old Black Spruce (SSA OBS), Old Jack Pine (OJP), Young Jack Pine (YJP), Old Aspen (OA), Old Aspen Auxiliary (OA-AUX), Young Aspen Auxiliary (YA-AUX), and Young Aspen (YA) sites. The data were collected during the growing seasons of 1994 and 1996 and are stored in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

Hall, Forrest G.↗

Remote Sensing in Geography in the New Millennium: Prospects, Challenges, and Opportunities

Remote sensing science contributes greatly to our understanding of the Earth's ecosystems and cultural landscapes. Almost all the natural and social sciences, including geography, rely heavily on remote sensing to provide quantitative, and indispensable spatial information. Many geographers have made significant contributions to remote sensing science since the 1970s, including the specification of advanced remote sensing systems, improvements in analog and digital image analysis, biophysical modeling, and terrain analysis. In fact, the Remote Sensing Specialty Group (RSSG) is one of the largest specialty groups within the AAG with over 500 members. Remote sensing in concert with a geographic information systems, offers much value to geography as both an incisive spatial-analytical tool and as a scholarly pursuit that adds to the body of geographic knowledge on the whole. The "power" of remote sensing as a research endeavor in geography lies in its capabilities for obtaining synoptic, near-real time data at many spatial and temporal scales, and in many regions of the electromagnetic spectrum - from microwave, to RADAR, to visible, and reflective and thermal infrared. In turn, these data present a vast compendium of information for assessing Earth attributes and characte6stics that are at the very core of geography. Here we revisit how remote sensing has become a fundamental and important tool for geographical research, and how with the advent of new and improved sensing systems to be launched in the near future, remote sensing will further advance geographical analysis in the approaching New Millennium.

Quattrochi, Dale A.↗

Unique NISTAR-Based Climate GCM Diagnostics of the Earth’s Planetary Albedo and Spectral Absorption Through Longitudinal Data Slicing

Deep Space Climate Observatory (DSCOVR) measurements of Earth’s reflected solar and emitted thermal radiation permit a unique model/data comparison perspective that is not readily available from other satellite data. The key factor is the unique Lissajous orbital viewing geometry from the Lagrangian L1 point, which enables a continuous view of Earth’s sunlit hemisphere. The National Institute of Standards and Technology Advanced Radiometer (NISTAR) is the DSCOVR Mission energy budget instrument, which views the reflected and emitted radiation of the Earth’s sunlit hemisphere by means of single pixel active cavity full-spectrum (Band-A, 0.2–100 μm) and filtered solar wavelength (Band-B, 0.2–4.0 μm; and Band-C, 0.7–4.0 μm) radiometer measurements. An additional solar wavelength photodiode channel (0.3–1.1 μm) provides a calibration reference. The objective of this study is the assessment of climate GCM performance via direct model/data comparisons. Such comparisons are difficult due to quasi-chaotic natural variability present in real-world observational data and in climate GCM simulations. This is where the unique DSCOVR viewing geometry makes possible the longitudinal data slicing methodology for more direct model/data comparison. The key point of the longitudinal slicing approach is that data integration over the entire sunlit hemisphere eliminates the quasi-chaotic meteorological weather-scale noise, while preserving intra-seasonal and planetary-scale variability. The rotation of the Earth that retrieves this climate-style, large-scale longitudinal and seasonal variability. The hemispheric averaging is accomplished automatically in NISTAR measurements with its single-pixel view of the Earth. For climate GCMs, this requires implementing the Sunlit Hemisphere Sampling (SHS) scheme to operate on the GCM run-time output data, utilizing the DSCOVR Satellite Ephemeris data to assure precise viewing geometry between NISTAR measurements and GCM output data, while averaging out the meteorological weather noise. However, GCM generated data are radiative fluxes, while NISTAR (and EPIC) measurements are near-backscattered radiances. Conversing NISTSR measurements into radiative fluxes cannot be accomplished using NISTAR data alone, even with detailed support from conventional satellite data. But the identical viewing geometry of Earth’s sunlit hemisphere, and synergistic analyses of EPIC data make it feasible for this conversion of NISTAR near-backscatter radiances into radiative fluxes.

deep space climate observatory↗