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NASA NTRS2016

Comparison of Key Absorption and Optical Properties Between Pure and Transported Anthropogenic Dust over East and Central Asia

Asian dust particulate is one of the primary aerosol constituents in the Earth-atmosphere system that exerts profound influences on environmental quality, human health, the marine biogeochemical cycle, and Earth's climate. To date, the absorptive capacity of dust aerosol generated from the Asian desert region is still an open question. In this article, we compile columnar key absorption and optical properties of mineral dust over East and Central Asian areas by utilizing the multiyear quality-assured datasets observed at 13 sites of the Aerosol Robotic Network (AERONET). We identify two types of Asian dust according to threshold criteria from previously published literature. (1) The particles with high aerosol optical depth at 440 nm (AOD(440) > or = 0.4) and a low Angstrom wavelength exponent at 440-870 nm (alpha < 0.2) are defined as Pure Dust (PDU), which decreases disturbance of other non-dust aerosols and keeps high accuracy of pure Asian dust. (2) The particles with AOD(440) > or = 0.4 and 0.2 < alpha < 0.6 are designated as Transported Anthropogenic Dust (TDU), which is mainly dominated by dust aerosol and might mix with other anthropogenic aerosol types. Our results reveal that the primary components of high AOD days are predominantly dust over East and Central Asian regions, even if their variations rely on different sources, distance from the source, emission mechanisms, and meteorological characteristics. The overall mean and standard deviation of single-scattering albedo, asymmetry factor, real part and imaginary part of complex refractive index at 550 nm for Asian PDU are 0.935 +/- 0.014, 0.742 +/- 0.008, 1.526 +/- 0.029, and 0.00226 +/- 0.00056, respectively, while corresponding values are 0.921 +/- 0.021, 0.723 +/- 0.009, 1.521 +/- 0.025, and 0.00364 +/- 0.0014 for Asian TDU. Aerosol shortwave direct radiative effects at the top of the atmosphere (TOA), at the surface (SFC), and in the atmospheric layer (ATM) for Asian PDU (alpha < 0.2) and TDU (0.2 < alpha < 0.6) computed in this study, are a factor of 2 smaller than the results of Optical Properties of Aerosols and Clouds (OPAC) mineral-accumulated (mineral-acc.) and mineral-transported (mineral-tran.) modes. Therefore, we are convinced that our results hold promise for updating and improving accuracies of Asian dust characteristics in present-day remote sensing applications and regional or global climate models.

Bi, Jianrong↗
NASA NTRS2017

The South/Southeast Asia Research Initiative (SARI) Update and Meeting Objectives

Land Use/Cover Change (LU/CC) is one of the most important types of environmental change in South and Southeast Asian countries. Several studies suggest that LU/CC in these countries is in large part driven by population growth and economic development. In the region, changes that are most common include urban expansion, agricultural land loss, land abandonment, deforestation, logging, reforestation, etc. To address the research needs and priorities in the region, a regional initiative entitled South Southeast Asia Regional Initiative (SARI) has been developed involving US and regional scientists. The initiative is funded by NASA Land Cover, Land Use Change program. The goal of SARI is to integrate state-of-the-art remote sensing, natural sciences, engineering and social sciences to enrich LU/CC science in South Southeast Asian countries. In the presentation, LU/CC change research in SARI countries will be highlighted including the drivers of change. For example, in South Asia, forest cover has been increasing in countries like India, Nepal and Bhutan due to sustainable afforestation measures; whereas, large-scale deforestation in Southeast Asian countries is still continuing, due to oil palm plantation expansion driven by the international market demand in Malaysia and Indonesia. With respect to urbanization, South and Southeast Asian countries contain 23 megacities, each with more than 10 million people. Rapid urbanization is driving agricultural land loss and agricultural intensification has been increasing due to less availability of land for growing food crops such as in India, Vietnam, and Thailand. The drivers of LUCC vary widely in the region and include such factors as land tenure, local economic development, government policies, inappropriate land management, land speculation, improved road networks, etc. In addition, variability in the weather, climate, and socioeconomic factors also drive LU/CC resulting in disruptions of biogeochemical cycles, radiation and the surface energy balance of the atmosphere. The presentation will also highlight SARI collaborative activities with space agencies, universities and non-government organizations including data sharing mechanisms in the region.

Research↗
NASA NTRS2019

How Well Does NASA GEOS Model Perform in Simulating Dust Deposition into the Tropical Atlantic Ocean?

Massive dust emitted from North Africa can transport long distances across the tropical Atlantic Ocean, reaching the Americas. Dust deposition along the transit adds microorganisms and essential nutrients to marine ecosystem, which has important implications for biogeochemical cycle and climate. However, assessing the dust-ecosystemclimate interactions has been hindered in part by the paucity of dust deposition measurements and large uncertainties associated with oversimplified representations of dust processes in current models. We have recently produced a unique dataset of seasonal dust deposition flux and dust loss frequency into the tropical Atlantic Ocean at a nominal resolution of 200 km x 500 km by using the decade-long (2007-2016) record of aerosol three-dimensional distribution from four satellite sensors, namely CALIOP, MODIS, MISR, and IASI. On the basis of the ten-year average, the yearly dust deposition into the tropical Atlantic Ocean is estimated at 98-153 Tg. The dust deposition shows large spatial and temporal (on seasonal and interannual scale) variability. The satellite observations also yield an estimate of annual mean dust loss frequency of 0.052 ~ 0.078 d-1, a useful diagnostic that makes it possible to disentangle the dust transport and removal processes from the dust emissions when identifying the major factors contributing to the uncertainties and biases in the model simulated dust deposition. In this study, we use the dataset along with in situ and remote sensing observations to assess how well NASA GEOS model performs in simulating trans-Atlantic dust transport and deposition. We found that the GEOS modeling of dust deposition falls within the range of satellite-based estimates. However, this reasonable agreement in dust deposition is a compensation of the model's underestimate of dust emissions and overestimate of dust removal efficiency. Further, the overestimate of dust removal efficiency results largely from the model's overestimate of rainfall rate. Our results provide insights into the model's deficiencies at process level, which could better guide model improvements.

Yu, Hongbin↗
NASA NTRS2014

Airborne In-Situ Trace Gas Measurements of Multiple Wildfires in California (2013-2014)

Biomass burning emissions are an important source of a wide range of trace gases and particles that can impact local, regional and global air quality, climate forcing, biogeochemical cycles and human health. In the western US, wildfires dominate over prescribed fires, contributing to atmospheric trace gas budgets and regional and local air pollution. Limited sampling of emissions from wildfires means western US emission estimates rely largely on data from prescribed fires, which may not be a suitable proxy for wildfire emissions.We report here in-situ measurements of carbon dioxide, methane, ozone and water vapor from the plumes of a variety of wildfires sampled in California in the fire seasons of 2013 and 2014. Included in the analysis are the Rim Fire (August October 2013, near Yosemite National Park), the Morgan Fire (September 2013, near Clayton, CA), and the El Portal Fire (July August 2014, in Yosemite National Park), among others. When possible, fires were sampled on multiple days.Emission ratios and estimated emission factors will be presented and discussed in the context of fuel composition, plume structure, and fire phase. Correlations of plume chemical composition to MODISVIIRS Fire Radiative Power (FRP) and other remote sensing information will be explored. Furthermore, the role of plumes in delivery of enhanced ozone concentrations to downwind municipalities will be discussed.

Gas↗
NASA NTRSDate not supplied

Comparing the Regional Variability of Emission Factors of Greenhouse Gases Over Different Landscape During FIREX-AQ Campaign

Biomass burning (wildfires, prescribed and agricultural burning) is one of the major sources of trace gases and particulate emissions and annual variability in growth rates. Biomass burning can impact local, regional, and global air quality, as well as climate. Measurements of emissions from biomass burning are crucial to a better understanding of how it influences and interacts with biogeochemical cycles. High resolution in-situ measurements were recorded onboard the NASA DC-8 aircraft during the FIREX-AQ (Fire Influence on Regional to Global Environments and Air Quality) airborne field campaign July-September, 2019, which was conducted over the continental U.S. Fire emission factors (EF) are essential input for emissions models used to develop biomass burning emission inventories. Here we present the Emission Ratio (ER), MCE (Modified Combustion Efficiency), and EF (Emission Factor) of CO2, CO, and CH4, which constitute the majority of carbon emitted from the wildland, prescribed, and agricultural fires. EFCO2, EFCO, and EFCH4 from the Wildland fires at Williams Flats, WA (primarily Douglas Fir, Ponderosa pine, wheatgrass: 50-75%), ranged from 1527 – 1820 g/kg (Avg. 1641±42), 6.5 – 174.1 g/kg (110.5±24.1), and 0.7 – 11.3 g/kg (6.2±1.9), respectively. EFs from the Arizona CASTLE fire, with somewhat different fuel sources (primarily Ponderosa pine, Douglas fir: 40-70%) ranged from 1266 – 1667 g/kg (1596±59), 99.5 – 344.5 g/kg (136.7±36.8), and 0.4 – 9.2 g/kg (7.2±1.7), respectively. Another primary driver of EFs is likely fire weather. Detailed variability of greenhouse gas EFs will be examined and presented in accordance with different fuels and fire conditions at burned areas, specifically within unique wildland and croplands, using the FCCS (Fuel Characteristic Classification System) 30m land cover identification and the Cropland Data Layer (CDL).

Biomass burning↗
NASA NTRS2020

SMAP Detects Soil Moisture under Temperate Forest Canopies

Soil moisture dynamics in the presence of dense vegetation canopies are determinants of ecosystem function and biogeochemical cycles, but the capability of existing spaceborne sensors to support reliable and useful estimates is not known. New results from a recently initiated field experiment in the northeast United States show that the NASA SMAP (Soil Moisture Active Passive) satellite is capable of retrieving soil moisture under temperate forest canopies. We present an analysis demonstrating that a parameterized emission model with the SMAP morning overpass brightness temperature resulted in a RMSD (root mean square difference) range of 0.047-0.057 m(exp 3)/m(exp 3) and a Pearson correlation range of 0.75-0.85 depending on the experiment location and the SMAP polarization. The inversion approach included a minimal amount of ancillary data. This result demonstrates unequivocally that spaceborne L-band radiometry is sensitive to soil moisture under temperate forest canopies, which has been uncertain because of lack of representative reference data.

Andreas Colliander↗
NASA NTRSDate not supplied

Comparing the regional variability of emission factors of greenhouse gases over different landscape during FIREX-AQ campaign

Biomass burning (wildfires, prescribed and agricultural burning) is one of the major sources of trace gases and particulate emissions and annual variability in growth rates. Biomass burning can impact local, regional, and global air quality, as well as climate. Measurements of emissions from biomass burning are crucial to a better understanding of how it influences and interacts with biogeochemical cycles. High resolution in-situ measurements were recorded onboard the NASA DC-8 aircraft during the FIREX-AQ (Fire Influence on Regional to Global Environments and Air Quality) airborne field campaign July-September, 2019, which was conducted over the continental U.S. Fire emission factors (EF) are essential input for emissions models used to develop biomass burning emission inventories. Here we present the Emission Ratio (ER), MCE (Modified Combustion Efficiency), and EF (Emission Factor) of CO2, CO, and CH4, which constitute the majority of carbon emitted from the wildland, prescribed, and agricultural fires. EFCO2, EFCO, and EFCH4 from the Wildland fires at Williams Flats, WA (primarily Douglas Fir, Ponderosa pine, wheatgrass: 50-75%), ranged from 1527 – 1820 g/kg (Avg. 1641±42), 6.5 – 174.1 g/kg (110.5±24.1), and 0.7 – 11.3 g/kg (6.2±1.9), respectively. EFs from the Arizona CASTLE fire, with somewhat different fuel sources (primarily Ponderosa pine, Douglas fir: 40-70%) ranged from 1266 – 1667 g/kg (1596±59), 99.5 – 344.5 g/kg (136.7±36.8), and 0.4 – 9.2 g/kg (7.2±1.7), respectively. Another primary driver of EFs is likely fire weather. Detailed variability of greenhouse gas EFs will be examined and presented in accordance with different fuels and fire conditions at burned areas, specifically within unique wildland and croplands, using the FCCS (Fuel Characteristic Classification System) 30m land cover identification and the Cropland Data Layer (CDL).

Biomass burning↗
NASA NTRS2019

The Global Fire Atlas of Individual Fire Size, Duration, Speed and Direction

Natural and human-ignited fires affect all major biomes, altering ecosystem structure, biogeochemical cycles and atmospheric composition. Satellite observations provide global data on spatiotemporal patterns of biomass burning and evidence for the rapid changes in global fire activity in response to land management and climate. Satellite imagery also provides detailed information on the daily or sub-daily position of fires that can be used to understand the dynamics of individual fires. The Global Fire Atlas is a new global dataset that tracks the dynamics of individual fires to determine the timing and location of ignitions, fire size and duration, and daily expansion, fire line length, speed, and direction of spread. Here, we present the underlying methodology and Global Fire Atlas results for 2003–2016 derived from daily moderate-resolution (500 m) Collection 6 MCD64A1 burned-area data. The algorithm identified 13.3 million individual fires over the study period, and estimated fire perimeters were in good agreement with independent data for the continental United States. A small number of large fires dominated sparsely populated arid and boreal ecosystems, while burned area in agricultural and other human-dominated landscapes was driven by high ignition densities that resulted in numerous smaller fires. Long-duration fires in boreal regions and natural landscapes in the humid tropics suggest that fire season length exerts a strong control on fire size and total burned area in these areas. In arid ecosystems with low fuel densities, high fire spread rates resulted in large, short-duration fires that quickly consumed available fuels. Importantly, multiday fires contributed the majority of burned area in all biomass burning regions. A first analysis of the largest, longest and fastest fires that occurred around the world revealed coherent regional patterns of extreme fires driven by large-scale climate forcing. Global Fire Atlas data are publicly available through http://www.globalfiredata.org (last access: 9 August 2018) and https://doi.org/10.3334/ORNLDAAC/1642, and individual fire information and summary data products provide new information for benchmarking fire models within ecosystem and Earth system models, understanding vegetation–fire feedbacks, improving global emissions estimates, and characterizing the changing role of fire in the Earth system.

global fire atlas↗
NASA NTRS2018

Mapping Forest Disturbance Intensity in North and South Carolina Using Annual Landsat Observations and Field Inventory Data

Disturbance and regrowth are vital processes in determining the roles of forest ecosystem in the carbon and biogeochemical cycles. Using time series observations, the vegetation change tracker (VCT) algorithm was designed to map the location, timing, and spectral magnitudes of forest disturbance events. While these spectral disturbance magnitudes are indicative of physical changes in tree cover or biomass, their quantitative relationships have yet to be established. This study focuses on estimating disturbance intensity as measured by percent basal area removal using spectral indices from the VCT algorithm over North and South Carolina. Repeat measurements on Forest Service Forest Inventory Analysis (FIA) ground plots, which provide changes in basal area between multiple dates at precise locations, are used for training and validation of the model. The overall R2 between predicted disturbance intensity and reference data is 0.66, and cross-validation prediction uncertainty is 14% in North Carolina. Possible causes of this uncertainty could be site heterogeneity and the temporal offset between ground measurements and satellite observations. Results show the area of stand clearing disturbances remains relatively stable around 1143 km2 yr−1 in North and South Carolina throughout the period of observations (1985–2015). The average amount of forest area affected by partial disturbance is much higher at 3287 km2 yr−1. The area of partial disturbances has strong inter-annual variability with a high value of 6000 km2 in 2007 and a low value of 1919 km2 in 2013.

Xin Tao↗
NASA NTRS2022

Skillful Seasonal Forecasts of Land Carbon Uptake in Northern Mid- and High Latitudes

Here we present a first look at the Gross Primary Production (GPP) forecast skill levels achievable with a state-of-the-art subseasonal-to-seasonal (S2S) forecast system. Using NASA’s retrospective S2S ensemble forecast in conjunction with a terrestrial biosphere model, and using an independent, remote sensing-based dataset for validation, we demonstrate an ability to accurately forecast spring-summer carbon uptake at multi-month leads. Averaged across mid-and high latitudes of the Northern Hemisphere land, the GPP forecast initialized on January 1 produces statistically significant skill through summer. The skill achieved, however, is spatially variable, with some regions appearing to extract skill from accurate forecasts of snowpack removal and others extracting skill from the initialization of carbon and nitrogen states. Our results reveal some heretofore unexplored facets of climate predictability and provide a look at what might be possible with future S2S forecast systems that are fully integrated with biogeochemical cycles.

Eunjee Lee↗
NASA NTRSDate not supplied

The ACCP Inclined Orbit Project: Enabling New and Synergistic Aerosol Remote Sensing Inversions

Atmospheric aerosols have high spatiotemporal variations due to their diverse sources including windblown dust, wildfires, volcanic eruptions, and anthropogenic emissions. These aerosols also have strong diurnal emission characteristics that influence long-range transport, air quality, Earth’s radiation budget, biogeochemical cycles, and weather forecasting. While current sensors can measure the steady-state of global 3D cloud and aerosol properties, we lack the observational datasets to discover the diurnal variability of aerosols, even at seasonal and regional scales, because these missions utilize sun synchronous orbits. An Aerosols and Clouds, Convection and Precipitation (ACCP) observing system has been established as part of NASA’s new Earth System Observatory (ESO) to fulfill the science needs presented in the 2017 Earth Science Decadal Survey. The selected ACCP architecture encompasses sensors in two orbit planes, one of which utilizes an inclined orbit (nominally ~55 degrees at a 407 km altitude) to advance our understanding of aerosol and cloud properties and target the dynamics of the cloud and aerosol processes on sub-daily time scales. The anticipated instrumentation suite for the ACCP Inclined Orbit Project is a Stereo Camera System, Polarimeter, Microwave Radiometer, Two-Frequency Radar, and Backscatter Lidar. The polarimeter is expected to have multiple wavelength bands and viewing angles to enable accurate retrievals of aerosol microphysical and optical properties. The backscatter lidar will provide vertical profiles of attenuated backscatter and depolarization ratio at two wavelengths, with better daytime signal-to-noise ratio than previous space-based lidar systems to improve aerosol detection/typing and estimates of aerosol optical properties. The stereo camera system, while designed primarily for clouds, will also provide aerosol plume heights and air motions at the plume heights. This invited presentation will provide (1) an overview of the ACCP Inclined Orbit Project, (2) a description of the new sensor capabilities and orbital characteristics, and (3) a preview of the potential for new synergistic aerosol inversion techniques.

John E Yorks↗
NASA NTRS2022

Evaluation of Retrieving Chlorophyll a Concentration and Colored Dissolved Organic Matter Absorption from Satellite Ocean Color Remote Sensing in the Coastal Waters of Hokkaido, Japan

Coastal ecosystems are important in biogeochemical cycles, because they provide many pathways for chemical elements and compounds to flow between the physical environment and living organisms. The spatial and temporal scales of the biotic and abiotic interactions establish the inherent dynamics of the coastal zone and the requirement for high-resolution investigations. Using match-up data collected in Hokkaido coastal waters, the study herein evaluated the performance of deriving chlorophyll (Chl) a concentration and colored dissolved organic matter (CDOM) absorption (a(sub CDOM)) as a function of wavelength (λ) from satellite observations. The Japanese Aerospace Exploration Agency (JAXA) Second generation GLobal Imager (SGLI), which has 250 m spatial resolution, was compared with other satellite ocean color (OC) sensors. Our results show that the standard SGLI OC4 algorithm with the 530 nm band provided the best performance for Chl a retrievals, and the end-member analysis (EMA) technique improved the estimation of a(sub CDOM)(λ) . Overall differences between in situ radiometric data and satellite retrievals suggest that additional challenges remain, especially in the ultraviolet and blue spectral domains which are useful for studying CDOM and harmful algae blooms in coastal waters. To fulfill applications wherein high-quality remote sensing data are required, the improvement of the atmospheric correction is a likely research area where additional accomplishment will be beneficial for satellite observations of optically complex coastal waters.

SGLI/GCOM-C↗
NASA NTRSDate not supplied

History of NASA Global Lightning Observations

Why does NASA study lightning from space? • Lightning is a natural hazard - threatening lives, damaging infrastructure, causing wildfires, and posing a risk to NASA rocket launches. • Lightning is related to processes within deep convection, and by studying lightning we learn more about how storms impact Earth’s weather and climate. • Lightning produces nitrogen oxides, which modulate ozone levels in the atmosphere. These gases are important for biogeochemical cycles and Earth’s climate. • Lightning affects regions beyond Earth’s troposphere and occurs on other planets.

Timothy Lang↗
NASA NTRS2022

Soil Carbon Losses Reduce Soil Moisture in Global Climate Model Simulations

Most agricultural soils have experienced substantial soil organic carbon losses in time. These losses motivate recent calls to restore organic carbon in agricultural lands to improve biogeochemical cycling and for climate change mitigation. Declines in organic carbon also reduce soil infiltration and water holding capacity, which may have important effects on regional hydrology and climate. To explore the regional hydroclimate impacts of soil organic carbon changes, we conduct new global climate model experiments with NASA Goddard Institute for Space Studies ModelE that include spatially explicit soil organic carbon concentrations associated with different human land management scenarios. Compared to a “no land use” case, a year 2010 soil degradation scenario, in which organic carbon content (OCC; weight %) is reduced by a factor of ∼0.12 on average across agricultural soils, resulted in soil moisture losses between 0.5 and 1 temporal standard deviations over eastern Asia, northern Europe, and the eastern United States. In a more extreme idealized scenario where OCC is reduced uniformly by 0.66 across agricultural soils, soil moisture losses exceed one standard deviation in both hemispheres. Within the model, these soil moisture declines occur primarily due to reductions in porosity (and to a lesser extent infiltration) that overall soil water holding capacity. These results demonstrate that changes in soil organic carbon can have meaningful, large-scale effects on regional hydroclimate and should be considered in climate model evaluations and developments. Further, this also suggests that soil restoration efforts targeting the carbon cycle are likely to have additional benefits for improving drought resilience.

Atmosphere-land interaction↗
NASA NTRS2023

How Does the Use of Different Soil Mineralogical Atlases Impact Soluble Iron Deposition Estimates?

Atmospheric deposition is the primary input of soluble iron (Fe) in remote regions of the open ocean. Fe constitutes a fundamental micro-nutrient for marine biota, affecting biogeochemical cycles and ultimately carbon uptake. Fe is emitted to the atmosphere primarily from dust sources. Fe solubility at emission is origin-dependent, being mostly insoluble when associated with dust minerals. Earth System Models (ESMs) commonly assume that dust aerosols have a globally uniform composition, neglecting known regional variations in soil mineralogy. This work assesses the implications of soil composition uncertainties on the bio-available Fe delivery to the ocean by using a state-of-the-art ESM with a detailed atmospheric Fe cycle (EC-Earth3-Iron). We run two 1-year simulations considering two different Soil Mineralogy Atlases (SMAs). Our results reveal a non-negligible impact of soil mineralogy uncertainties on soluble Fe estimates. By only changing the source of information for the soil composition and updating the Fe content in minerals, we find differences of 31.5% in mineral Fe emissions and 26.7% in soluble Fe deposition budgets.

soluble iron↗
NASA NTRS2023

Phytoplankton Diversity and Chemotaxonomy in Contrasting North Pacific Ecosystems

Background. Phytoplankton is the base of majority of ocean ecosystems. It is responsible for half of the global primary production, and different phytoplankton taxa have a unique role in global biogeochemical cycles. In addition, phytoplankton abundance and diversity are highly susceptible to climate induced changes, hence monitoring of phytoplankton and its diversity is important and necessary. Methods. Water samples for phytoplankton and photosynthetic pigment analyses were collected in boreal winter 2017, along transect in the North Pacific Subtropical Gyre (NPSG) and the California Current System (CCS). Phytoplankton community was analyzed using light and scanning electron microscopy and photosynthetic pigments by high-performance liquid chromatography. To describe distinct ecosystems, monthly average satellite data of MODIS Aqua Sea Surface temperature and Chlorophyll a concentration, as well as Apparent Visible Wavelength were used. Results. A total of 207 taxa have been determined, mostly comprised of coccolithophores (35.5%), diatoms (25.2%) and dinoflagellates (19.5%) while cryptophytes, phytoflagellates and silicoflagellates were included in the group ``others" (19.8%). Phytoplankton spatial distribution was distinct, indicating variable planktonic dispersal rates and specific adaptation to ecosystems. Dinoflagellates, and nano-scale coccolithophores dominated NPSG, while micro-scale diatoms, and cryptophytes prevailed in CCS. A clear split between CCS and NPSG is evident in dendogram visualising LINKTREE constrained binary divisive clustering analysis done on phytoplankton counts and pigment oncentrations. Of all pigments determined, alloxanthin, zeaxanthin, divinyl chlorophyll b and lutein have highest correlation to phytoplankton counts. Conclusion. Combining chemotaxonomy and microscopy is an optimal method to determine phytoplankton diversity on a large-scale transect. Distinct communities between the two contrasting ecosystems of North Pacific reveal phytoplankton groups specific adaptations to trophic state, and support the hypothesis of shift from microto nano-scale taxa due to sea surface temperatures rising, favoring stratification and oligotrophic conditions.

oceanography↗
NASA NTRS2021

Geological Factors Impacted Cadmium Availability and use as an Alternative Cofactor for Zinc in the Carbon Fixation Pathways of Marine Diatoms

Transition metal cofactors are crucial for many biological processes. Despite being primarily considered to be toxic, the transition metal cadmium (Cd) was discovered to be a substitute cofactor for zinc (Zn) in photosynthetic carbon fixation pathways of marine diatoms. However, it is not known how conditions in the geosphere impacted Cd availability and its incorporation as an alternative metal cofactor for phytoplankton. We employed mineral chemistry network analysis to investigate which geochemical factors may have influenced the availability of Cd and Zn during the putative time period that the alternative Cd-based pathway evolved. Our results show that Zn minerals are more chemically diverse than are Cd minerals, but Zn- and Cd-containing minerals have similar network centrality values when specifically considering sulfur (S)-containing species. Cadmium and Zn sulfides are the most common Cd- and Zn-containing mineral species over the past 500 million years. In particular, the Cd and Zn sulfides, respectively greenockite and sphalerite, were highly abundant during this time period. Furthermore, S-containing Cd and Zn minerals are commonly co-located in geologic time, allowing them to be weathered and transported to the ocean in tandem, rather than from separate sources. We suggest that the simultaneous weathering of Cd and Zn sulfides allowed for Cd to be a bioavailable direct substitute for Zn in protein complexes during periods of Zn depletion. The biogeochemical cycles of Zn and Cd exemplify the importance of the coevolution of the geosphere and biosphere in shaping primary production in the modern ocean.

Naman Srivastava↗
NASA NTRS2022

Quantifying Structural Relationships of Metal-Binding Sites Suggests Origins of Biological Electron Transfer

Biological redox reactions drive planetary biogeochemical cycles. Using a novel, structure-guided sequence analysis of proteins, we explored the patterns of evolution of enzymes responsible for these reactions. Our analysis reveals that the folds that bind transition metal–containing ligands have similar structural geometry and amino acid sequences across the full diversity of proteins. Similarity across folds reflects the availability of key transition metals over geological time and strongly suggests that transition metal–ligand binding had a small number of common peptide origins. We observe that structures central to our similarity network come primarily from oxidoreductases, suggesting that ancestral peptides may have also facilitated electron transfer reactions. Last, our results reveal that the earliest biologically functional peptides were likely available before the assembly of fully functional protein domains over 3.8 billion years ago. Thus, life is a special, very complex form of motion of matter, but this form did not always exist, and it is not separated from inorganic nature by an impassable abyss; rather, it arose from inorganic nature as a new property in the process of evolution of the world. We must study the history of this evolution if we want to solve the problem of the origin of life.

Yana Bromberg↗