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157 records · Page 9

Let’s Get Real: Are Wearable Plant Sensors Ready for Crop Monitoring?

In recent years, the number of publications describing new and exciting developments in wearable plant sensors (WPSs) has skyrocketed. These small, lightweight sensors hold promise to assist precision agriculture and may thus help reduce crop losses, increase resource use efficiency, and automate crop production. However, WPSs are often not adequately tested in environments relevant for crop growth, and the majority of experimental WPS studies reveal a glaring lack of basic knowledge of plant biology. This review aims to bridge the communication gap between WPS developers and the wider plant research community by (1) providing essential physiological and environmental background information for engineers in relation to WPS sensing capabilities, (2) offering a step-by-step guide to conduct sensor tests on plants correctly, and (3) highlighting potential challenges and suggesting WPS applications in the open field, greenhouses, and vertical farming systems. We hope this review facilitates the development of WPSs and guides them to be truly “ready for the world”.

crop monitoring↗

A general mechanistic framework for cross-scale understanding of hot spots and hot moments in carbon and water fluxes

Semi-arid ecosystems, like those in the American Southwest, exert a massive impact on the interannual variability of carbon and water cycling. Unfortunately, these carbon and water fluxes are notoriously difficult to predict due to their high spatial and temporal variability, which is poorly captured by the current generation of vegetation models. Indeed, this region is exemplified by the ‘hot spots and hot moments’ concept, which states that small areas in space (‘hot spots’) and transient moments in time (‘hot moments’) exert an outsized influence on biogeochemical cycling. However, the factors that regulate these pulses in biogeochemical activity are unknown, as is their variability across space and time. These uncertainties severely limit efforts to better represent hot spots and hot moments in models. Here, we seek to develop a generalized method for detecting and quantifying the importance of hot spots and hot moments from individual plant to regional scales. Underpinning this method is our recently developed statistical approach for identifying hot spots and hot moments. By applying this method to semi-continuous measurements of plant water status, a depth profile of soil water potential, and ecosystem fluxes via eddy covariance, we will track the fate of water through the soil-plant-atmosphere continuum and identify the mechanistic drivers of these transient pulses in biogeochemical activity. Then, we will expand this approach across a broad network of Ameriflux towers, and apply a machine learning approach that will allow us to upscale measurements of hot spots and hot moments across the American Southwest and quantify their impact on carbon and water cycles. These products will allow us to identify hot spots and hot moments across spatio-temporal scales and will serve as crucial data sources for validating a new generation of models that can better capture highly dynamic carbon and water fluxes. The proposed method will be easily transferable across biomes and will serve as a framework for future research on hot spots and hot moments across the plant ecophysiology, biometeorology, and vegetation modeling communities.

54 ENVIRONMENTAL SCIENCES↗

Mathematical Morphological Filtering with a Self-Adaptive Reconstruction Technique and Application to Local Seismic Data

Recorded seismic data are generally contaminated by noise from different sources, which masks the signals of interest. In the seismology community, frequency filtering (FF) is the standard method for noise suppression. However, when the signal of interest and noise share the same frequency band, the latter cannot be filtered out without infringing on the former. We implemented a noise suppression approach based on the mathematical morphology theorem. The method involves compound operations of dilation and erosion using structuring elements of varying lengths and decomposes an input noisy waveform into several time functions with differing characteristics. Further, the filtered waveform is constructed from the time functions using a self-adaptive reconstruction technique. Application to a data set of >4700 local waveforms suggests that the implemented mathematical morphological filtering (MMF) approach is efficient for data with low signal-to-noise ratio (SNR) and significantly outperforms FF in that SNR range. For most of the dataset, FF, machine learning (ML) denoising, and continuous wavelet transform (CWT) thresholding result in higher SNR values compared with the MMF method. However, for ~42% of the waveforms, MMF outperforms FF, and the SNR gain achieved with MMF is as large as ~23 dB. Compared to ML denoising and CWT thresholding, this proportion drops to only ~10%–14%. Our results suggests that in an operational setting, MMF cannot replace the other noise suppression methods; however, signal detection can be improved if MMF is used to supplement them in some scenarios. MMF could help detect signals in problematic low-SNR data, which are currently being missed particularly when using FF alone.

58 GEOSCIENCES↗

Probing the Isospin Composition of Short-Range Correlated Pairs at Jefferson Lab Hall B

Nucleons in short-range correlated (SRC) pairs, due to their close proximity and high relative momentum, can provide insight into the short-range part of the strong nuclear interaction. In particular, the prevalence of np pairs is due to the dominance of a tensor term for correlated nucleons with momenta of approximately 400?600 MeV/c. This dissertation comprises two studies advancing the community?s understanding of the isospin composition of SRC pairs. First, I performed a study of proton and neutron knockout from initially low-momentum and high-momentum states in 3He. Previous work has shown that protons are disproportionately represented in high-momentum states in neutron-rich nuclei. I demonstrate that spectral functions for the proton-rich nucleus 3He predict, in agreement with data, that neutrons are disproportionately represented in high-momentum states, but that 3He does not display the same strong prevalence of np pairs that is observed in larger nuclei. Second, Generalized Contact Formalism (GCF), a well-supported theory for predicting SRC behavior, predicts the transition from an isospin-dependent, tensor-dominant interaction at intermediate distances to a scalar-dominant, isospin-independent interaction at very short distances. This dissertation uses data from the CLAS12 Nuclear Targets Experiments in Hall B at Jefferson Lab to measure the relative abundances of pp and pn pairs for increasing relative momentum and decreasing separation. I provide an independent confirmation of the previously-observed increase in pp pairs at increasing momentum of the struck nucleon. I also contribute to the application of the new CLAS12 Central Neutron Detector by precisely measuring the neutron detection efficiency and developing a machine learning model for rejecting charged particle background.

Seroka, Erin↗

The "Fake" Supernova Neutrinos of SBND: Using Muons Decaying at Rest to Study the Charged Current MeV-Scale $V_e$-Ar Cross Section

In a Type-II core collapse supernova, 99% of the total amount of energy is released in the form of neutrinos. However, the nearest supernova explosion in the last few hundred years was in 1987, over thirty years ago. It was also the first from which particle detectors around the world managed to detect the neutrino flux, yielding important information about their properties and the explosion mechanism. Neutrinos are the most weakly interacting subatomic fundamental particles known to date, and they act as a cooling mechanism for the star. Out of the six neutrino flavours currently known, the majority exiting the explosion are electron neutrinos, ve. Neutrino experiments using liquid argon (LAr) as their detector medium are unique at probing this specific channel. In the meantime, however, until the next explosion, we can still practise for the big event. With the Short Baseline Near Detector (SBND) experiment at Fermilab, we can study how electron neutrinos of the same energy coming from the Booster Neutrino Beam (BNB) interact in LAr, and measure the cross section. As BNB measurements are mostly tailored to higher energy neutrinos, I will present an overview of how SBND is aiming to select the low-energy neutrino candidates from muons Decaying At Rest (DAR) in the absorber and target within the BNB beam pipe. This is not a straightforward feat, encompassing special difficulties that include beam and flux systematic uncertainty simulation, system trigger needs and particular reconstruction efforts, and so I will present how each challenge is being addressed in SBND. This will be a novel measurement in the neutrino particle physics community, and will prove fundamental for the next generation of supernova neutrino detectors.

Kotsiopoulou, Lucy [Edinburgh U.]↗

Observations of marine animal interactions with a small tidal turbine

The risk of collisions between animals and operating tidal turbines remains a concern in the scientific and regulatory communities. A sensor package including optical cameras was deployed to monitor animal interactions with a small-scale (1 m 2 ) cross-flow tidal turbine. The turbine was deployed in Washington State, USA for 141 days at a site with peak flow speeds of 2.5 m/s. We analyze optical camera imagery spanning 109 days of turbine operation. The analyzed images contain 1044 observations of fish, fish schools, seabirds, or seals in the vicinity of the turbine. No instances of collision with seabirds or seals were observed. Seabirds were only observed during daylight hours and while the turbine was stationary. Both seals and fish were observed during both day and night and while the turbine was stationary and rotating. Four fish were observed colliding with the moving turbine and in all but one case the animals swam away following the collision. Over the same period of time, over fifty times more fish (224 individual fish and 5 fish schools) were observed passing the moving turbine without collision. Fish encounters were likely under counted due to the difficulty in discerning small fish from plant matter in the water column. These observations represent the first optical camera imagery showing fish, bird, and marine mammal interactions with a tidal turbine in North America. In addition to quantitative and qualitative discussion of the implications of our observations for collision risk, we discuss lessons learned on sampling schemes and deployment of machine learning for detection of animals to inform future data collection strategies in future monitoring campaigns.

16 TIDAL AND WAVE POWER↗

Enhancing Biopreparedness through a Model System to Understand the Molecular Mechanisms that Lead to Pathogenesis and Disease Transmission: NW-BRaVE

The science of biopreparedness to counter biological threats hinges on understanding the fundamental principles and molecular mechanisms that lead to pathogenesis and disease transmission. Our vision to address this challenge is to create a powerful and user-friendly platform to elucidate the fundamental principles of how molecular interactions drive pathogen-host relationships and host shifts. We will enable groundbreaking discoveries by integrating a wide range of structural, genomics, proteomics, and other advanced omics measurements, along with evolutionary and artificial intelligence predictions. To make sure the system is applicable to real-world problems, we will develop it in the context of a tractable model system, the small, abundant, and accessible photosynthetic cyanobacteria and their constantly co-adapting viral pathogens, cyanophages. This model will maintain the system’s applicability to real-world problems and techniques, but the overall focus will be on elucidating general principles of detecting, assessing, and surveilling molecular interaction, adaptation, and coevolution that are system agnostic and therefore extensible to other viral-host interactions. Our overall objectives are to (1) identify the molecular complexes that comprise the cyanobacteria redox macromolecular subsystem and how they dynamically change with bacteriophage infection in situ, using cryo-electron tomography; (2) profile regulatory changes during infection using proteomics, multiomics, and experimental validation, and integrate the data with in situ structures; (3) use genomics and metagenomics to determine environmental and population factors across time scales that impact the interactions between marine cyanobacteria and their cyanophage parasites, predicting the evolutionary origins of in situ structural and functional interactions, convergence and coevolution; and (4) develop a data integration and transformation platform that facilitates the integration of in situ, proteomic, and evolutionary measurements of molecular interactions to surveil diverse hosts and parasites in various environmental contexts. These objectives address Focus Area 2 Reveal Molecular Interactions Across Biological Scales for Design of Targeted Interventions. Our powerful and user-friendly platform will enhance connections between the often-siloed fields of structure, molecular phenotype, and evolutionary genomics that are key to biopreparedness, but in need of integration (Figure 1). We will build an integrated navigation tool to facilitate the effective use of globally distributed experimental data for integrated analysis and predictive modeling. The project will develop, implement, and test a platform to assess host-pathogen molecular interactions, adaptation to hosts and host shifts, and coevolution between hosts and pathogens, successfully impacting the research community by revolutionizing abilities to study any host-pathogen interaction, encourage diverse community contributions, and gain fundamental insights into how proteins adapt to new contexts. This ability will be critical for designing early interventions to address future threats. We will build surveillance training capability, aiming for a fair and equitable response to future pandemics and biothreats.

59 BASIC BIOLOGICAL SCIENCES↗

Exabiome: Advancing Microbial Science through Exascale Computing

The Exabiome project seeks to improve the understanding of microbiomes through the development of methods for accelerating metagenomic science using exascale computing. This article gives an overview of scientific impact of the three components of the project: metagenome assembly, protein family detection, and comparative analysis of metagenomes. Exabiome developed MetaHipMer, the only metagenome assembler capable of scaling to full exascale systems. MetaHipMer has enabled ground-breaking assemblies on the Frontier supercomputer, with many scientific benefits, such as the discovery of rare species and viral genomes. To investigate protein families, Exabiome developed two exascale tools, PASTIS and HipMCL. Together, these can utilize exascale resources to understand the functional diversity of billions of dark matter proteins and novel protein families. For comparative analysis, Exabiome developed kmerprof, a tool that can be used to compare huge metagenomes for many different scientific purposes, for example, grouping human microbiomes according to body location.

59 BASIC BIOLOGICAL SCIENCES↗

Granger causal inference for climate change attribution

Abstract Climate change detection and attribution (D&A) is concerned with determining the extent to which anthropogenic activities have influenced specific aspects of the global climate system. D&A fits within the broader field of causal inference, the collection of statistical methods that identify cause and effect relationships. There are a wide variety of methods for making attribution statements, each of which require different types of input data and focus on different types of weather and climate events and each of which are conditional to varying extents. Some methods are based on Pearl causality (direct experimental interference) while others leverage Granger (predictive) causality, and the causal framing provides important context for how the resulting attribution conclusion should be interpreted. However, while Granger-causal attribution analyses have become more common, there is no clear statement of their strengths and weaknesses relative to Pearl-causal attribution and no clear consensus on where and when Granger-causal perspectives are appropriate. In this prospective paper, we provide a formal definition for Granger-based approaches to trend and event attribution and a clear comparison with more traditional methods for assessing the human influence on extreme weather and climate events. Broadly speaking, Granger-causal attribution statements can be constructed quickly from observations and do not require computationally-intesive dynamical experiments. These analyses also enable rapid attribution, which is useful in the aftermath of a severe weather event, and provide multiple lines of evidence for anthropogenic climate change when paired with Pearl-causal attribution. Confidence in attribution statements is increased when different methodologies arrive at similar conclusions. Moving forward, we encourage the D&A community to embrace hybrid approaches to climate change attribution that leverage the strengths of both Granger and Pearl causality.

Risser, Mark D. (ORCID:0000000319561783)↗

Deep X-Ray Observation of NGC 3221: Everything Everywhere All at Once

We present a comprehensive analysis of 475 ks (438 ks unpublished and 37 ks archival) XMM-Newton/EPIC-pn observations of a nearby, highly inclined, star-forming, luminous infrared galaxy NGC 3221 through spatial, temporal, and spectral information. We confirm the presence of a low-luminosity (presumably Compton-thick) active galactic nucleus (AGN). The 0.4–12 keV luminosity and the hardness ratio of the six ultraluminous X-ray sources previously identified in Chandra data exhibit diverse variability on day scales. The collective emission from unresolved sources exhibits a different day-scale variability. We have also discovered two new predominantly soft (<1 keV) sources. One of these has an enigmatic spectral shape featuring a soft component, which we interpret as a superbubble in NGC 3221, and a variable hard component from a compact object, unresolved from the superbubble. We do not confidently detect any X-ray emission from SN 1961L. The hot gas in the interstellar medium (ISM, out to ±6 kpc from the disk plane) and that in the extraplanar region (6–12 kpc) both require two thermal phases at ∼0.15 keV and ∼0.55 keV. The ∼0.55 keV component is fainter in the ISM than the ∼0.15 keV component, but the emission from the latter falls off more steeply with disk height than the emission from the former. This makes the extraplanar region hotter and less dense than the ISM. The proximity of NGC 3221 and the occurrence of the underluminous AGN offer a unique observing opportunity to study the hot diffuse medium along with nuclear and diskwide point sources.

Das, Sanskriti [Stanford Univ., CA (United States)↗

A Roadmap for a Lightning Modeling Grand Challenge

This document is a roadmap for building an interconnected model of the physical processes that produce a lightning discharge, and its observable optical and radio signals. We call this a Lightning Modeling Grand Challenge, recognizing that significant effort and coordination of human and financial resources is required to realize the capability. The roadmap serves to outline the coordination of resources necessary to enable stitching together existing knowledge and model components to make a lightning prediction, and to test these predictions with observations. Such a capability does not currently exist. The roadmap is motivated not only by a spirit of scientific inquiry, but by practical challenges faced by US Federal and societal stakeholders. Advancements in lightning observations have outpaced our tests of integrated understanding, leaving many stakeholders unsure how to design their missions to properly detect and discriminate lightning, and unsure how to apply the sometimes-disagreeing lightning signals from diverse instruments. The time is right to connect existing theories and models to support stakeholders in understanding the signals they observe, for needs as diverse as climate monitoring, national security, weather forecasting, public safety, and protection of natural and built environments. The roadmap’s two main technical sections describe the components of a linked physical model, followed by a description of models of lightning signals and sensors that are driven by outputs from the physical model. The goal is to predict the time-varying physical properties of lightning that are self-consistent with the thunderstorm’s structure and dynamics. These lightning signals then propagate through the storm, with realistic dispersion and attenuation, to receivers on the ground or in space. At a high level, the model begins with weather (cloud) model output, including explicit prediction of the electrification of cloud particles. The cloud’s electrical structure drives a model of lightning physics, from initiation, through channel development, and discharges along those channels. Key lightning parameters, such as the temperature and currents in the channel, and their space and time distribution, are then used to produce optical and electromagnetic signal sources that propagate to modeled receivers. This architecture therefore generates a dataset suitable for comparison to existing and envisioned observing systems. The need for additional measurements and field campaigns to support model development is described. In each model sub-component, inputs, outputs, uncertainties, evaluation methods, and next steps are summarized, interleaved with references to the scientific literature. Identifying boundaries between the model sub-components aids in segmenting an integrated, complex model into practical work packages and system sub-components, allowing a diverse team to contribute and maintain the system. We estimate that at least five years of effort and a $\$$10M initial investment is necessary to make a significant step forward. Mechanisms to facilitate community coordination, including annual workshops and open-source code repositories, are described.

54 ENVIRONMENTAL SCIENCES↗

Deciphering Reaction Mechanisms of Molecular Proton Reduction Catalysts with Cyclic Voltammetry: Kinetic vs Thermodynamic Control

The kinetics and thermodynamics of elementary reaction steps involved in the catalytic reduction of protons to hydrogen define the reaction landscape for catalysis. The mechanisms can differ in the order of the elementary proton transfer, electron transfer, and bond-forming steps and can be further differentiated by the sites at which protons and electrons localize. Access to fully elucidated mechanistic, kinetic, and thermochemical details of molecular catalysts is crucial to facilitate the development of new catalysts that operate with optimal efficiency, selectivity, and durability. The mechanism by which a catalyst operates, as well as the kinetics and thermodynamics associated with the individual steps, can often be accessed through electroanalytical studies. Here, this Account details the application of cyclic voltammetry to interrogate reaction mechanisms and quantify the kinetics and thermodynamics of elementary reaction steps for a series of molecular catalysts that mediate electrochemical proton reduction. I distinguish the limiting scenarios wherein a catalyst operates under kinetic control vs thermodynamic control, with a focus on detecting how cyclic voltammetry features shift with proton source strength and concentration, as well as scan rate. For systems that operate under kinetic control, catalytic currents are observed at, or slightly positive toward, the formal potential for the redox process that triggers catalysis. Under thermodynamic control, catalytic responses shift as a function of the proton source pKa and effective pH of the solution. After drawing this distinction, we introduce the appropriate voltammetry experiments and accompanying analytical expressions for extracting key metrics from the data. To illustrate analytical strategies to quantify elementary reaction steps of catalysts operating under kinetic control, I describe our studies of proton reduction catalysts Co(dmgBF 2 ) 2 (CH 3 CN) 2 (dmgBF 2 = difluoroboryl-dimethylglyoxime) and [Ni(P 2 Ph N 2 Ph ) 2 ] 2+ (P 2 Ph N 2 Ph = 1,5-phenyl-3,7-phenyl-1,5-diaza-3,7-diphosphacyclooctane). Here, peak shift analysis, foot-of-the-wave analysis, and plateau current analysis are applied to data sets wherein voltammetric response are recorded as a function of catalyst concentration, proton source concentration, proton source strength, and scan rate to quantify rate constants for elementary proton transfer and bond-forming steps in a catalytic cycle. Further, the case study of [Ni(P 2 Ph N 2 Ph ) 2 ] 2+ illustrates how complementary spectroscopic methods can bolster the mechanistic assignment. Collectively, these two studies showcase how detailed mechanistic studies inform on rate-limiting elementary steps in catalysis and other key processes underpinning catalysis. Second, I present analytical strategies to interrogate catalysts operating under thermodynamic control, centered on the case study of [Ni II (P 2 Ph N 2 Bn ) 2 ] 2+ (P 2 Ph N 2 Bn = 1,5-dibenzyl-3,7-diphenyl-1,5-diaza-3,7-diphosphacyclooctane). Here, the application of nonaqueous Pourbaix theory to extract thermodynamic information is introduced, and the construction of a coupled Pourbaix diagram is detailed. This study identifies ligand-based protonation as the key process that places catalysis under thermodynamic control and influences the reaction mechanism. Together, the work detailed in this Account showcases the utility of electroanalytical methods to disentangle complex reaction mechanisms and extract key thermochemical and kinetic parameters for elementary steps of catalysis. Through detailed presentation of the key analytical expressions that underpin these analyses, this Account seeks to facilitate the adoption of cyclic voltammetry by the community to fully extract kinetic, thermochemical, and mechanistic information on electrochemical small-molecule activation.

catalysts↗

Fault localization in a microfabricated surface ion trap using diamond nitrogen-vacancy center magnetometry

Here, as quantum computing hardware becomes more complex with ongoing design innovations and growing capabilities, the quantum computing community needs increasingly powerful techniques for fabrication failure root-cause analysis. This is especially true for trapped-ion quantum computing. As trapped-ion quantum computing aims to scale to thousands of ions, the electrode numbers are growing to several hundred, with likely integrated photonic components also adding to the electrical and fabrication complexity, making faults even harder to locate. In this work, we used a high-resolution quantum magnetic imaging technique, based on nitrogen-vacancy centers in diamond, to investigate short-circuit faults in an ion trap chip. We imaged currents from these short-circuit faults to ground and compared them to intentionally created faults, finding that the root cause of the faults was failures in the on-chip trench capacitors. This work, where we exploited the performance advantages of a quantum magnetic sensing technique to troubleshoot a piece of quantum computing hardware, is a unique example of the evolving synergy between emerging quantum technologies to achieve capabilities that were previously inaccessible.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗