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DOE OSTI2019

IPEAT+: A Built-In Optimization and Automatic Calibration Tool of SWAT+

For almost 30 years, the Soil and Water Assessment Tool (SWAT) has been successfully implemented to address issues around various scientific subjects in the world. On the other hand, it has been reaching to the limit of potential flexibility in further development by the current structure. The new generation SWAT, dubbed SWAT+, was released recently with entirely new coding features. SWAT+ is designed to have far more advanced functions and capacities to handle challenging watershed modeling tasks for hydrologic and water quality processes. However, it is still inevitable to conduct model calibration before the SWAT+ model is applied to engineering projects and research programs. The primary goal of this study is to develop an open-source, easy-to-operate automatic calibration tool for SWAT+, dubbed IPEAT+ (Integrated Parameter Estimation and Uncertainty Analysis Tool Plus). There are four major advantages: (i) Open-source code to general users; (ii) compiled and integrated directly with SWAT+ source code as a single executable; (iii) supported by the SWAT developer group; and, (iv) built with efficient optimization technique. The coupling work between IPEAT+ and SWAT+ is fairly simple, which can be conducted by users with minor efforts. IPEAT+ will be regularly updated with the latest SWAT+ revision. If users would like to integrate IPEAT+ with various versions of SWAT+, only few lines in the SWAT+ source code are required to be updated. IPEAT+ is the first automatic calibration tool integrated with SWAT+ source code. Users can take advantage of the tool to pursue more cutting-edge and forward-thinking scientific questions.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2019

Controlling error orientation to improve quantum algorithm success rates

The success probability of a quantum algorithm constructed from noisy quantum gates cannot be accurately predicted from single-parameter metrics that compare noisy and ideal gates. We illustrate this concept by examining a system with coherent errors and comparing algorithm success rates for different choices of two-qubit gates that are constructed from composite pulse sequences, where the residual gate errors are related by a unitary transformation. As a result, all of the sequences have the same error relative to the ideal gate under any distance measure that is invariant under unitary transformations. However, the circuit success can vary dramatically by choosing error orientations that do not affect the final outcome and error orientations that cancel between conjugate controlled-nots, as demonstrated here with Clifford circuits, compiled Toffoli gates, and quantum simulation algorithms. Furthermore, the results point to the utility of both minimizing the error and optimizing the error direction and also to the advantages of using multiple control sequences for the same gate type within a single algorithm.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2023

Mammalian Chromosome Analysis and Sorting by Flow Cytometry

The analysis of chromosomes by flow cytometry is termed flow cytogenetics, and it involves the analysis and sorting of single mitotic chromosomes in suspension. The study of flow karyograms provides insight into chromosome number and structure to provide information on chromosomal DNA content and can enable the detection of deletions, translocations, or any forms of aneuploidy. Beyond its clinical applications, flow cytogenetics greatly contributed to the Human Genome Project through the ability to sort pure populations of chromosomes for gene mapping, cloning, and the construction of DNA libraries. Maximizing the potential of these important applications of flow cytogenetics relies on precise instrument setup and optimal sample processing, both of which impact the accuracy and quality of the data that are generated. This article is a compilation of the existing protocols that describe the stepwise methodology of accumulating, isolating, and staining metaphase chromosomes to prepare single-chromosome suspensions for flow cytometric analysis and sorting. Although the chromosome preparation protocols have remained largely unchanged, cytometer technology has advanced dramatically since these protocols were originally developed. Advances in cytometry technologies offer new and exciting approaches for understanding and monitoring chromosomal aberrations, but the hallmark of these protocols remains their simplicity in methodologies and reagent requirements and the accuracy of data resolvable to every chromosome of the cell.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

COMET: A Domain-Specific Compilation of High-Performance Computational Chemistry

The computational power increases over the past decades have greatly enhanced the ability to simulate chemical reactions and understand ever more complex transformations. Tensor contractions are the fundamental computational building block of these simulations. These simulations have often been tied to one platform and restricted in generality by the interface provided to the user. The expanding prevalence of accelerators and researcher demands necessitate a more general approach which is not tied to specific hardware or requires contortion of algorithms to specific hardware platforms. In this paper we present COMET, a domain-specific programming language and compiler infrastructure for tensor contractions targeting heterogeneous accelerators. We present a system of progressive lowering through multiple layers of abstraction and optimization that achieves up to 1.98×speedup for 30 tensor contractions commonly used in computational chemistry and beyond.

Mutlu, Erdal↗

DOE OSTI2022

Community Data Mining Approach for Surface Complexation Database Development

This paper presents a comprehensive data-to-model workflow, including a findable, accessible, interoperable, reusable (FAIR) community sorption database (newly developed LLNL Surface Complexation/Ion Exchange (L-SCIE) database) along with a data fitting workflow to efficiently optimize surface complexation reaction constants with multiple surface complexation model (SCM) constructs. This workflow serves as a universal framework to mine, compile, and analyze large numbers of published sorption data as well as to estimate reaction constants for parameterizing reactive transport models. Here the framework includes (1) data digitization from published papers, (2) data unification including unit conversions, and (3) data-model integration and reaction constant estimation using geochemical software PHREEQC coupled with the universal parameter estimation code PEST. We demonstrate our approach using an analysis of U(VI) sorption to quartz based on a first L-SCIE implementation, concluding that a multisite SCM construct with carbonate surface species yielded the best fit to community data. Surface complexation reaction constants extracted from this approach captured all available sorption data available in the literature and provided insight into previously published reaction constants and surface complexation model constructs. The L-SCIE sorption database presented herein allows for automating this approach across a wide range of metals and minerals and implementing novel machine learning approaches to reactive transport in the future.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗

DOE OSTI2026

Blueprint for DOE Quantum Supercomputing: Ensuring U.S. Leadership in the Quantum Decade

Quantum computing stands at the threshold of a transformative decade, where the field will evolve from small-scale demonstrations toward practical scientific computing at scale. This Blueprint identifies fault-tolerant quantum computers (FTQCs) as a viable, scalable, and broadly applicable path to achieving “quantum scientific utility,” defined as solving scientifically valuable problems beyond the reach of conventional, classical computers. This capability is expected to show scientific demonstrations in the late 2020s and to mature in the early-to-mid 2030s. This Blueprint outlines a strategy to prepare the U.S. Department of Energy (DOE) for FTQCs and their integration into the U.S. national scientific computing infrastructure. Its purpose is to identify the steps, milestones, and research directions necessary for DOE to enable initial deployment of FTQCs in 2028 as a scientific tool for the nation and mature this capability into the 2030s. DOE has a long history of supporting quantum information science and technology, contributing significantly to research advancements, training a quantum-ready workforce, and providing access to early small-scale quantum hardware. Given recent demonstrations of logical operations on error-corrected logical qubits and the advancement of commercial hardware roadmaps, DOE should begin preparations for large-scale, fault-tolerant quantum computing deployment for DOE science missions. This Blueprint proposes that DOE focus on (1) deploying first-generation scientifically relevant quantum computers with at least 100 logical qubits and performing at least 10,000 to 100,000 hard logical operations in scientifically relevant calculations; (2) developing essential FTQC programming competencies, system software, and facility readiness; and (3) investing in cutting edge focused R&D that fosters breakthroughs in scientific applications, algorithms, and logical architectures needed to accelerate the advent of scientific utility. This effort will position DOE to transition to larger systems: production-scale quantum computers that comprise 1,000 to 10,000 logical qubits, perform 1 to 10 billion hard logical operations, and execute scientifically useful computations at scale. Achieving these goals will require DOE facilities to evolve with urgency to support scientific campaigns that integrate quantum and classical computing resources into efficient workflows, novel software and firmware environments for compiling and routing quantum programs on FTQC machines, and suitable infrastructure for quantum hardware. It will also require further development and optimization of scientific applications from the fields of materials science, quantum chemistry, and high-energy and nuclear physics. The Blueprint calls for transformative R&D and collective action to accelerate the advent of scientific quantum utility and bring it within reach by 2028.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2018

Zero Energy University Campuses: A 2018 Progress Update on Reaching Campus Energy Goals: Preprint

Many universities have aggressive energy-reduction and climate action plans. To reach these goals, leading universities have developed a suite of common energy-efficiency and renewable generation strategies. In this paper, we present a common set of approaches across the following areas: zero energy campus definitions and planning, best practices for including energy targets in new construction procurement contracts and design guidelines, implementing pilot new construction zero energy projects, aggressively implementing best-in-class laboratory energy-efficiency strategies, planning for and optimizing on-site and off-site renewable energy projects, and high-performance district energy systems. Best practices are compiled from various experiences, including programs funded by the U.S. Department of Energy, Energy Efficiency and Renewable Energy program. The summary of these best practices is to reduce campus energy use and then meet the remaining campus energy needs with renewable energy. The fivestep process to developing and implementing campus energy-reduction plans is described: 1) determine baseline energy consumption, 2) analyze technology options, 3) develop a plan and set priorities, 4) implement the plan, and 5) evaluate progress. The process follows a logical hierarchy of actions to evaluate options by energy sector and set specific targets. It encompasses all energy systems on campus, recognizing that campus-wide measures have increased potential for reducing energy use. Common strategies are explained along with examples and results.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2018

Zero Energy University Campuses: A 2018 Progress Update on Reaching Campus Energy Goals

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2020

SODA: a New Synthesis Infrastructure for Agile Hardware Design of Machine Learning Accelerators

Next generation systems, such as edge devices, will have to provide efficient processing of machine learning (ML) algorithms along several metrics, including energy, performance, area, and latency. However, the quickly evolving field of ML makes it extremely difficult to generate accelerators able to support a wide variety of algorithms. At the same time, designing accelerators in hardware description languages (HDLs) by hand is hard and time consuming, and does not allow quick exploration of the design space. This paper discusses the SODA synthesizer, an automated open source high-level ML framework-to-Verilog compiler targeting ML Application-Specific Integrated Circuits (ASICs) chiplets based on the LLVM infrastructure. The SODA synthesizers will allow implementing optimal designs by combining templated and fully tunable IPs and macros, and fully custom components generated through high-level synthesis. All these components will be provided through an extendable resource library, characterized with both commercial and open source logic design flows. Through a closed loop design space exploration engine, developers will be able to quickly explore their hardware designs along different dimension

Minutoli, Marco↗

DOE OSTI2020

Alaska North Slope 2018 Hydrate-01 Stratigraphic Test Well: Technical Results

The Hydrate-01 Stratigraphic Test Well was drilled in December 2018 to confirm that a seismically-identified location within the western Prudhoe Bay Unit might be suitable for extended-duration scientific production testing. The well featured the acquisition of a full suite of logging-while-drilling data, collection of side-wall pressure cores, and installation of distributed temperature and distributed acoustic sensor (DTS, DAS) fiber-optic cables. Evaluation of the logging-while-drilling data confirms gas hydrate is present at high saturation in two target sands of high reservoir quality. Acquired logs and samples enable critical petrophysical information to be compiled for input into production models. The well tested two primary targets: the deeper Unit B is highly favorable due to optimal reservoir temperature and minimal observed risk for direct communication with permeable, hydrate-free water-bearing zones. The shallower Unit D provides a secondary target and opportunity to

Boswell, Ray↗

DOE OSTI2021

Towards Automatic and Agile AI/ML Accelerator Design with End-to-End Synthesis

Domain-specific designs offer greater energy efficiency and performance gain than general-purpose processors. For this reason, modern system-on-chips have a significant portion of their silicon area with custom accelerators. However, designing hardware by hand is laborious and time-consuming, given the large design space and the performance, power, and area constraints that are not realized in the software. Moreover, domain-specific algorithms (e.g., machine learning models) are evolving quickly, challenging the accelerator design further. To address these issues, this paper presents SODA Synthesizer, an automated open-source high-level ML framework to Verilog modular compiler targeting AI/ML Application-Specific Integrated Circuits (ASICs) accelerators. SODA tightly couples the Multi- Level Intermediate Representation (MLIR) compiler infrastructure [24] and open-source HLS approaches. Thus, SODA can support various ML frameworks and algorithms and can perform optimizations that combine specialized architecture templates and conventional HLS to generate the hardware modules. In addition, SODA’s closed-loop design space exploration (DSE) engine allows developers to perform end-to-end design space explorations on different metrics and technology nodes.

Zhang, Jeff↗

DOE OSTI2025

JuTrack: A Julia package for auto-differentiable accelerator modeling and particle tracking

Efficient accelerator modeling and particle tracking are key for the design and configuration of modern particle accelerators. In this work, we present JuTrack, a nested accelerator modeling package developed in the Julia programming language and enhanced with compiler-level automatic differentiation (AD). With the aid of AD, JuTrack enables rapid derivative calculations in accelerator modeling, facilitating sensitivity analyses and optimization tasks. Here we demonstrate the effectiveness of AD-derived derivatives through several practical applications, including sensitivity analysis of space-charge-induced emittance growth, nonlinear beam dynamics analysis for a synchrotron light source, and lattice parameter tuning of the future Electron-Ion Collider (EIC). Through the incorporation of automatic differentiation, this package opens up new possibilities for accelerator physicists in beam physics studies and accelerator design optimization.

43 PARTICLE ACCELERATORS↗

DOE OSTI2022

Optical emissivity dataset of multi-material heterogeneous designs generated with automated figure extraction

Optical device design is typically an iterative optimization process based on a good initial guess from prior reports. Optical properties databases are useful in this process but difficult to compile because their parsing requires finding relevant papers and manually converting graphical emissivity curves to data tables. Here, we present two contributions: one is a dataset of thermal emissivity records with design-related parameters, and the other is a software tool for automated colored curve data extraction from scientific plots. We manually collected 64 papers with 176 figures reporting thermal emissivity and automatically retrieved 153 colored curve data records. The automated figure analysis software pipeline uses Faster R-CNN for axes and legend object detection, EasyOCR for axes numbering recognition, and k-means clustering for colored curve retrieval. Additionally, we manually extracted geometry, materials, and method information from the text to add necessary metadata to each emissivity curve. Finally, we analyzed the dataset to determine the dominant classes of emissivity curves and determine the underlying design parameters leading to a type of emissivity profile.

47 OTHER INSTRUMENTATION↗

DOE OSTI2024

Mixing effects on spectroscopy and partonic observables of heavy mesons with logarithmic confining potential in a light-front quark model

Using the variational principle, we systematically investigate the mass spectra and wave functions of both 1⁢𝑆 and 2⁢𝑆 state heavy pseudoscalar (𝑃) and vector (𝑉) mesons within the light-front quark model. This approach incorporates a Coulomb plus logarithmic confinement potential to accurately describe the constituent quark and antiquark dynamics. Additionally, spin hyperfine interactions are introduced perturbatively to compute the masses of pseudoscalar and vector mesons. The present analyses of the 1⁢𝑆 and 2⁢𝑆 states require the consideration of mixing between them to account for empirical constraints. These constraints include the mass gap Δ⁢𝑀 𝑃 >Δ⁢𝑀 𝑉 , where Δ⁢𝑀 𝑃⁡(𝑉) =𝑀$^{2⁢𝑆}_{𝑃⁡(𝑉)}$−𝑀$^{1⁢𝑆}_{𝑃⁡(𝑉)}$ and the hierarchy of the decay constants 𝑓 1⁢𝑆 >𝑓 2⁢𝑆 . We find the optimal value of the mixing angle to be 𝜃 =1⁢8°, significantly enhancing the consistency between our spectroscopic predictions and the experimental data compiled by the Particle Data Group. Furthermore, based on the predicted mass, the newly observed resonance 𝐵 𝐽⁡ (5840) could be assigned as a 2 1⁢ 𝑆 0 state in the 𝐵 meson family. The study also reports various pertinent observables, including twist-two distribution amplitudes, electromagnetic form factors, charge radii, 𝜉 moments, and transition form factors that are found to be consistent with both available lattice simulations and experimental data. In addition, our predicted branching ratios for the channels of 𝐵 + →𝜏 + ⁢𝜈 𝜏 as well as rare decays of 𝐵 0 and 𝐵$^0_𝑠$ appear in accordance with experimental data.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2025

Quantum Software Engineering (Dagstuhl Seminar 24512)

The Dagstuhl Seminar 24512 on "Quantum Software Engineering" was held from December 15 to 20, 2024. It brought together 26 participants from industry and academia from 13 different countries, including senior and junior researchers as well as practitioners in the field of Quantum Software Engineering. The aim of the seminar was to advance software engineering methods and tools for the engineering of hybrid quantum systems by promoting personal interaction and open discussion among researchers who are already working in this emerging area of knowledge. The first day of the seminar was devoted to the topic "When software engineering meets quantum mechanics", while the second day focused on "Quantum software engineering and its challenges." During both days, 16 invited presentations were given. The rest of the seminar was organized into three working groups to address the topics "Quantum Software Design, Modelling and Architecturing", "Adaptive Hybrid Quantum Systems", and "Quantum Software Quality Assurance". The seminar was a very fruitful experience for all participants both in terms of scientific outcomes and in terms of the personal relationships that were generated to jointly address future experiences.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2019

D-Wave for High Energy Physics

aWe analyze different problems in high-energy physics where quantum computing, and namely quantum annealers, may be able to provide an edge in coming years: 1) The training of Restricted Boltzmann Machines (RBM) is a natural problem for quantum annealers. We explore RBM trained on a D-Wave machine for classification of galaxy morphologies, including a discussion of how to obtain a Boltzmann distribution from the annealer. 2) For this study, we cast the problem of explaining and predicting the production of particles in high energy collisions (color recombination) as an optimization problem and employ classical and quantum computing techniques to find solutions. In particular, we present a quadratic unconstrained binary optimization (QUBO) formulation for quantum annealers. In parallel to these efforts, we also present the cross-platform XACC package for quantum compilation and execution.

Caldeira, J.↗

DOE OSTI2023

Automatic Code Generation for High-Performance Graph Algorithms

Graph problems are common across fields of scientific computing and social sciences. However, despite their importance, implementing graph algorithms effectively on modern computing systems is a challenging task that requires significant programming effort and generally results in customized implementations. Current computing and memory hierarchies are not architected for irregular computations resulting in challenges for graph algorithms to achieve high performance on those architectures. In this paper, we present GraphX, a novel compiler framework and DSL designed to simplify the development of efficient graph algorithms and achieve high performance on modern computing systems. GraphX consists of a DSL for efficient implementation of graph algorithms, various optimizations, such as support for sparse linear algebra and workspace transformations, optimized graph primitives, including semiring and masking, and a high-performance code generation engine. Using GraphX, users can implement graph algorithms using a semantically-rich language with graph-oriented operators. GraphX uses these semantics to automatically generate efficient code for target architectures, increasing performance and portability across architectures. The composable nature of GraphX makes it possible to extend the set of optimizations and architectures without modifying the source code. We demonstrate GraphX outperforms state-of-the-art graph libraries, such as LAGraph, up to $3.7 speedup in semiring operations, $2.19 speedup in an important sparse computational kernel, and $9.05 speedup in graph processing algorithms.

compiler, graph algorithms, semiring, masking, wor↗

DOE OSTI2025

Optimizing Deep Learning Models for Climate-Related Natural Disaster Detection from UAV Images and Remote Sensing Data

This research study utilized artificial intelligence (AI) to detect natural disasters from aerial images. Flooding and desertification were two natural disasters taken into consideration. The Climate Change Dataset was created by compiling various open-access data sources. This dataset contains 6334 aerial images from UAV (unmanned aerial vehicles) images and satellite images. The Climate Change Dataset was then used to train Deep Learning (DL) models to identify natural disasters. Four different Machine Learning (ML) models were used: convolutional neural network (CNN), DenseNet201, VGG16, and ResNet50. These ML models were trained on our Climate Change Dataset so that their performance could be compared. DenseNet201 was chosen for optimization. All four ML models performed well. DenseNet201 and ResNet50 achieved the highest testing accuracies of 99.37% and 99.21%, respectively. This research project demonstrates the potential of AI to address environmental challenges, such as climate change-related natural disasters. This study’s approach is novel by creating a new dataset, optimizing an ML model, cross-validating, and presenting desertification as one of our natural disasters for DL detection. Three categories were used (Flooded, Desert, Neither). Our study relates to AI for Climate Change and Environmental Sustainability. Drone emergency response would be a practical application for our research project.

AI↗