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At least 163 records · Page 9

Learning local equivariant representations for large-scale atomistic dynamics

Abstract A simultaneously accurate and computationally efficient parametrization of the potential energy surface of molecules and materials is a long-standing goal in the natural sciences. While atom-centered message passing neural networks (MPNNs) have shown remarkable accuracy, their information propagation has limited the accessible length-scales. Local methods, conversely, scale to large simulations but have suffered from inferior accuracy. This work introduces Allegro, a strictly local equivariant deep neural network interatomic potential architecture that simultaneously exhibits excellent accuracy and scalability. Allegro represents a many-body potential using iterated tensor products of learned equivariant representations without atom-centered message passing. Allegro obtains improvements over state-of-the-art methods on QM9 and revMD17. A single tensor product layer outperforms existing deep MPNNs and transformers on QM9. Furthermore, Allegro displays remarkable generalization to out-of-distribution data. Molecular simulations using Allegro recover structural and kinetic properties of an amorphous electrolyte in excellent agreement with ab-initio simulations. Finally, we demonstrate parallelization with a simulation of 100 million atoms.

74 ATOMIC AND MOLECULAR PHYSICS↗

Discovery of the luminous X-ray ignition eRASSt J234402.9-352640: I. Tidal disruption event or a rapid increase in accretion in an active galactic nucleus?

In November 2020, a new, bright object, eRASSt J234402.9-352640, was discovered in the second all-sky survey of SRG/eROSITA. The object brightened by a factor of at least 150 in 0.2–2.0 keV flux compared to an upper limit found six months previous, reaching an observed peak of 1.76 -0.24 +0.03 × 10 -11 erg cm -2 s -1 . The X-ray ignition is associated with a galaxy at z = 0.10, making the peak luminosity log 10 (L 0.2-2 keV /[erg s -1 ]) = 44.7 ± 0.1. Around the time of the rise in X-ray flux, the nucleus of the galaxy brightened by approximately 3 mag. in optical photometry, after correcting for the host contribution. We present X-ray follow-up data from Swift, XMM-Newton, and NICER, which reveal a very soft spectrum as well as strong 0.2–2.0 keV flux variability on multiple timescales. Optical spectra taken in the weeks after the ignition event show a blue continuum with broad, asymmetric Balmer emission lines, and high-ionisation ([OIII]λλ4959,5007) and low-ionisation ([NII]λ6585, [SII]λλ6716,6731) narrow emission lines. Following the peak in the optical light curve, the X-ray, UV, and optical photometry all show a rapid decline. The X-ray light curve shows a decrease in luminosity of ~0.45 over 33 days and the UV shows a drop of ~0.35 over the same period. eRASSt J234402.9-352640 also shows a brightening in the mid-infrared, likely powered by a dust echo of the luminous ignition. We find no evidence in Fermi-LAT γ-ray data for jet-like emission. The event displays characteristics of a tidal disruption event (TDE) as well as of an active galactic nucleus (AGN), complicating the classification of this transient. Based on the softness of the X-ray spectrum, the presence of high-ionisation optical emission lines, and the likely infrared echo, we find that a TDE within a turned-off AGN best matches our observations.

79 ASTRONOMY AND ASTROPHYSICS↗

Dynamic Behavior of Oval-Twisted Helical Tube Heat Exchanger: Numerical Study with RELAP5-3D

Convective heat transfer characteristics and theoretical thermal stress behaviors are numerically calculated using RELAP5-3D for the helical-coiled once-through steam generator (H-OTSG) and the novel heat exchanger design known as the oval-twisted helically coiled heat exchanger (OTHCHX) under (1) fluctuating wall temperature conditions, (2) square-wave pulsating flow conditions, and (3) the combined effects of fluctuating wall temperature and square-wave pulsating flow conditions. Heat transfer coefficient models for the H-OTSG and OTHCHX were developed based on existing data and implemented into RELAP5-3D, successfully capturing the N⁢uavg behavior within 8% to 10% of the reported data. Under fluctuating wall temperature conditions, the OTHCHX displayed higher N⁢u avg behavior than the H-OTSG. As 𝑓 increased, the $𝜎^{𝑚⁢𝑎⁢𝑥}_{𝑡⁢ℎ}$ decreased. The $𝜎^{𝑚⁢𝑎⁢𝑥}_{𝑡⁢ℎ}$ was higher for the OTHCHX than for the H-OTSG under fluctuating wall temperature conditions. Under pulsating flow conditions, the H-OTSG and OTHCHX displayed much higher 𝑁⁢𝑢 𝑎𝑣𝑔 than under constant flow conditions. The H-OTSG displayed a higher $𝜎^{𝑚⁢𝑎⁢𝑥}_{𝑡⁢ℎ}$ over the OTHCHX. Under combined fluctuating wall temperature and pulsating flow conditions, the augmented heat transfer behavior from the pulsating flow was counteracted by the wall temperature fluctuations, producing slightly higher 𝑁⁢𝑢 𝑎𝑣𝑔 over constant wall temperature, constant flow conditions, but much lower than only constant pulsating flow under constant wall temperature conditions. The effects of simultaneous wall temperature fluctuations and square-wave pulsating flow caused higher $𝜎^{𝑚⁢𝑎⁢𝑥}_{𝑡⁢ℎ}$ than that of only wall temperature fluctuations or pulsating flow. As the Reynolds number (Re) increased, $𝜎^{𝑚⁢𝑎⁢𝑥}_{𝑡⁢ℎ}$ increased. However, when 𝑓=𝑓$_{\dot{m}}$, the $𝜎^{𝑚⁢𝑎⁢𝑥}_{𝑡⁢ℎ}$ showed decreasing values as Re increased. In conclusion, the results indicate that thermal-fluid resonance can help mitigate thermal stresses.

Thermal stress↗

VotE-Dams: a compilation of global dams' locations and attributes (v1)

This dataset represents a compilation of two global and three USA-specific datasets of dam locations and their attributes. The major hurdle toward developing this compilation was the identification of duplicates within the source datasets, especially given the variable precision of dam location coordinates. The most immediately-useful product in this dataset is a spreadsheet (VotE-Dams_v1.csv) that documents the unique dams found across the datasets, their coordinates, and their ids within the respective source datasets. We do not reproduce the source datasets (GRaND, GOODD, GeoDAR, NID, and EHA) here, but their download locations are provided in the README files ('Overview' tab). Some of the source datasets are provided as shapefiles, which require geospatial data software to open (e.g. QGIS/ArcGIS for graphical display, geopandas for Python, rgdal for R, many others freely available). The provided README documents metadata of the source datasets and provides attribute-linking information (i.e. matches attributes among various source datasets that contain the same, or similar, information but have different names). Note that the README is provided as both .xslx and a collection of .csvs (one per tab in the .xslx file). We suggest using the .xlsx version that preserves images, formatting, and sheets. .xlsx files can be viewed using (free) Google Docs or Microsoft Excel.Finally, we provide Technical Documentation.pdf that describes the procedures used to identify unique and duplicate dams.The title of this dataset refers to our 'Veins of the Earth' (VotE) project, which seeks to provide a flexible, scale-free representation of the Earth's river networks. Dams are a critical component of VotE as they heavily influence flows throughout river networks.

54 ENVIRONMENTAL SCIENCES↗

GMS Station SOH Monitoring Configuration Guide (V.1.2)

The GMS Station State-of-Health (SOH) monitoring capability provides the system controller the ability to view current SOH values and calculated statistics for stations and channels, view trend plots of SOH values, be notified when station SOH status changes, and acknowledge or quiet notifications while the station issues are being investigated. The SOH monitoring capability includes components to acquire CD 1.1 protocol station data, extract SOH information from the raw data packets, process the raw SOH information for display, store the SOH information, and display the SOH information in an interactive display. All these components use system and processing configuration to provide the system controller mission-relevant information about station health. This document is a guide to setting the processing configuration for GMS SOH monitoring.

97 MATHEMATICS AND COMPUTING↗

A Unified User-Friendly Instrument Control and Data Acquisition System for the ORNL SANS Instrument Suite

In an effort to upgrade and provide a unified and improved instrument control and data acquisition system for the Oak Ridge National Laboratory (ORNL) small-angle neutron scattering (SANS) instrument suite—biological small-angle neutron scattering instrument (Bio-SANS), the extended q-range small-angle neutron scattering diffractometer (EQ-SANS), the general-purpose small-angle neutron scattering diffractometer (GP-SANS)—beamline scientists and developers teamed up and worked closely together to design and develop a new system. We began with an in-depth analysis of user needs and requirements, covering all perspectives of control and data acquisition based on previous usage data and user feedback. Our design and implementation were guided by the principles from the latest user experience and design research and based on effective practices from our previous projects. In this article, we share details of our design process as well as prominent features of the new instrument control and data acquisition system. The new system provides a sophisticated Q-Range Planner to help scientists and users plan and execute instrument configurations easily and efficiently. The system also provides different user operation interfaces, such as wizard-type tool Panel Scan, a Scripting Tool based on Python Language, and Table Scan, all of which are tailored to different user needs. The new system further captures all the metadata to enable post-experiment data reduction and possibly automatic reduction and provides users with enhanced live displays and additional feedback at the run time. We hope our results will serve as a good example for developing a user-friendly instrument control and data acquisition system at large user facilities.

47 OTHER INSTRUMENTATION↗

Nucleus++ : a new tool bridging AME and NUBASE for advancing nuclear data analysis

The newly developed software, Nucleus++ , is an advanced tool for displaying basic nuclear physics properties from NUBASE and integrating comprehensive mass information for each nuclide from Atomic Mass Evaluation. Additionally, it allows users to compare experimental nuclear masses with predictions from different mass models. Building on the success and learning experiences of its predecessor, Nucleus , this enhanced tool introduces improved functionality and compatibility. With its user-friendly interface, Nucleus++ was designed as a valuable tool for scholars and practitioners in the field of nuclear science. Finally, this article offers an in-depth description of Nucleus++ , highlighting its main features and anticipated impacts on nuclear science research.

AME↗

Tree Tops Site - Halo Streamline Scanning Lidar High-Frequency Wind Profile / Derived data

This dataset contains wind profiles retrieved from 6-beam Velocity Azimuth Display (VAD) scans done by a Streamline XR Doppler Lidar operated by Lawrence Livermore National Laboratory and deployed at the Tree Tops site (1.5 km South-West of MLBS site). The wind components (expressed as zonal, meridional and vertical) are retrieved through the algorithm of Paschke et al. (2015). The quality control of the radial wind speed is performed following the algorithm of Foken et al. (2004).

17 WIND ENERGY↗

MLBS Site - Halo Scanning Lidar High-frequency Wind Profile / Derived data

This dataset contains wind profiles retrieved from 6-beam Velocity Azimuth Display (VAD) scans done by a Streamline XR Doppler Lidar operated by the University of Virginia and deployed at the MLBS site. The wind components (expressed as zonal, meridional and vertical) are retrieved through the algorithm of Paschke et al. (2015). The quality control of the radial wind speed is performed following the algorithm of Foken et al. (2004).

17 WIND ENERGY↗

Three-Dimensional Grid Visualization for Planning Activities: A Dubai Case Study

National Laboratory of the Rockies (NLR), in collaboration with the Dubai Electricity and Water Authority (DEWA) and Infra-X, has undertaken the Energy Visualization Analysis Project. The aim of this project is to enhance analytical and 3D visualization capabilities for distribution network planning and renewable energy integration. As modern grid continues to evolve with large-scale solar PV deployment and emerging distributed energy resources (DERs), the ability to effectively analyze, visualize, and communicate complex grid behaviors has become increasingly critical. The project focuses on developing empirical use cases based on real distribution feeder data and engineering workflows, ensuring the outcomes are directly aligned with operational environment. Through time-series power flow simulations and nodal hosting capacity analysis, the study quantifies the impacts of high PV penetration on voltage and thermal limits within representative 11 kV feeders. These analyses identify specific nodes and conditions where DER integration challenges arise. Furthermore, a Battery Energy Storage System (BESS) optimization algorithm was applied to determine the optimal size and placement of storage systems that can mitigate network constraints and enhance hosting capacity. The comparative results between base-case and BESS-augmented scenarios clearly demonstrate improvements in network stability and load management efficiency. In parallel, the NLR team developed an immersive 3D visualization framework, enabling interactive exploration of grid simulations using commodity head-mounted display (HMD) systems. This framework transforms conventional 2D simulation data into spatially intuitive visual environments - allowing engineers to analyze feeder conditions, PV hosting potential, and BESS effects in real time. This report represents the first foundational phase in establishing a visualization-driven analytical ecosystem. It provides a methodological foundation for data integration, visualization architecture, and simulation-based decision support, paving the way for large-scale adoption of immersive visualization across DEWA's Smart Grid Initiative, R&D activities, and future network resilience studies.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Next Generation Cuprous Phenanthroline MLCT Photosensitizer Featuring Cyclohexyl Substituents

A new long–lived, visible light–absorbing homoleptic Cu(I) metal–to–ligand charge transfer (MLCT) photosensitizer [Cu(dchtmp) 2 ]PF 6 (dchtmp = 2,9–dicyclohexyl–3,4,7,8–tetramethyl–1,10–phenanthroline), has been synthesized, structurally characterized, and evaluated in terms of its molecular photophysics, electrochemistry, and electronic structure. Static and time–resolved transient absorption (TA) and photoluminescence (PL) spectroscopy measured on the title compound in CH 2 Cl 2 (τ = 2.6 μs, Φ PL = 5.5%), CH 3 CN (τ = 1.5 μs, Φ PL = 2.6%), and THF (τ = 2.0 μs, Φ PL = 3.7%) yielded impressive photophysical metrics even when dissolved in Lewis basic solvents. The combined static spectroscopic data along with ultrafast TA experiments revealed that the pseudo–Jahn–Teller distortion and intersystem crossing dynamics in the MLCT excited state displayed characteristics of being sterically arrested throughout its evolution. Here, electrochemical and static PL data illustrate that [Cu(dchtmp) 2 ]PF 6 is a potent photoreductant (–1.77 V vs. Fc +/o in CH 3 CN) equal to or greater than all previously investigated homoleptic Cu(I) diimine complexes. Although we successfully prepared the cyclopentyl analog dcptmp (2,9–dicyclopentyl–3,4,7,8–tetramethyl–1,10–phenanthroline) using the same C–C radical coupling photochemistry as dchtmp, the corresponding Cu(I) complex could not be isolated due to the steric hinderance presented at the metal center. Ultimately, the successful preparation of [Cu(dchtmp) 2 ] + represents a major step forward for the design and discovery of novel earth–abundant photosensitizers made possible through a newly conceived ligand synthetic strategy.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Developing Digital Twin Visualizations: A Methodology and Case Study on Chemical Separation Processing

As advances in digital engineering continue to push the technological boundaries, digital twin (DT) visualizations for diagnostics and safeguards advancement become much more feasible and practical. DTs generate large and complex data streams that require effective user interfaces to provide monitoring and diagnostic capabilities. Unfortunately, while these frameworks exist, there is not much research on the systematic documentation of human–computer interaction (HCI) for DT visualization. This work presents a dual-mode visualization methodology (two dimensional [2D] graphical user interface dashboard and 3D mixed reality) designed to support diagnostic tasks in DT systems and building on a validated framework and applying established HCI principles. The methodology is demonstrated through a case study of aqueous processing at Idaho National Laboratory, using experimental data from the chemical solvent extraction runs. Our interfaces display real-time alerts and monitoring to inform users of safeguards anomalies. The interfaces use immersive 3D mixed-reality visualization for further system and experiment investigation. This work demonstrates how the systematic application of HCI principles can inform DT visualization design for diagnostic and safeguards applications. While formal user evaluation studies remain as future work, this paper documents the systematic design methodology and demonstrates a proof-of-concept implementation.

3D visualization↗

Comparison between mirror Langmuir probe and gas-puff imaging measurements of intermittent fluctuations in the Alcator C-Mod scrape-off layer

Statistical properties of the scrape-off layer plasma fluctuations are studied in ohmically heated plasmas in the Alcator C-Mod tokamak. For the first time, plasma fluctuations as well as parameters that describe the fluctuations are compared across measurements from a mirror Langmuir probe (MLP) and from gas-puff imaging (GPI) that sample the same plasma discharge. This comparison is complemented by an analysis of line emission time-series data, synthesized from the MLP electron density and temperature measurements. The fluctuations observed by the MLP and GPI typically display relative fluctuation amplitudes of order unity together with positively skewed and flattened probability density functions. Such data time series are well described by an established stochastic framework that models the data as a superposition of uncorrelated, two-sided exponential pulses. The most important parameter of the process is the intermittency parameter, $γ=τ_d/τ_w$, where τd denotes the duration time of a single pulse and $τ_w$ gives the average waiting time between consecutive pulses. In this study we show, using a new deconvolution method, that these parameters can be consistently estimated from different statistics of the data. We also show that the statistical properties of the data sampled by the MLP and GPI diagnostic are very similar. Finally, a synthetic GPI signal using only plasma parameters sampled by the MLP shows qualitatively different fluctuation statistics from the measured GPI signal.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Heterogeneous Visualization: A Call for Empirically Driven Technology Advancement and Adoption; Preprint

Our ability to generate data from simulations and experimental platforms is generally outpacing our ability to analyze those data efficiently and effectively. There are a growing number and variety of possible visualization display modalities, from commodity head-mounted displays to large-scale immersive environments, from desktop and touch displays to high-resolution display walls. Many of these visualization technologies and visual environments are rapidly evolving and could revolutionize analysis for certain classes of complex scientific and engineering data. However, the choice of what technology or combination of technologies to use has historically been largely ad hoc and lacks a carefully validated understanding of how to best utilize different visualization technologies to advance the science. To maximize the impact of our data and analyses, it is imperative that we use the most effective visualization environments for the analysis task at hand.

heterogeneous visualization↗

Photosynthetic responses to temperature across the tropics: a meta-analytic approach

Background and Aims Tropical forests exchange more carbon dioxide (CO 2 ) with the atmosphere than any other terrestrial biome. Yet, uncertainty in the projected carbon balance over the next century is roughly three times greater for the tropics than other for ecosystems. Our limited knowledge of tropical plant physiological responses, including photosynthetic, to climate change is a substantial source of uncertainty in our ability to forecast the global terrestrial carbon sink. Methods Here, we used a meta-analytic approach, focusing on tropical photosynthetic temperature responses, to address this knowledge gap. Our dataset, gleaned from 18 independent studies, included leaf-level light-saturated photosynthetic (A sat ) temperature responses from 108 woody species, with additional temperature parameters (35 species) and rates (250 species) of both maximum rates of electron transport (J max ) and Rubisco carboxylation (V cmax ). We investigated how these parameters responded to mean annual temperature (MAT), temperature variability, aridity and elevation, as well as also how responses differed among successional strategy, leaf habit and light environment. Key Results Optimum temperatures for A sat (T optA ) and J max (T optJ ) increased with MAT but not for V cmax (T optV ). Although photosynthetic rates were higher for ‘light’ than ‘shaded’ leaves, light conditions did not generate differences in temperature response parameters. T optA did not differ with successional strategy, but early successional species had ~4 °C wider thermal niches than mid/late species. Semi-deciduous species had ~1 °C higher T optA than broadleaf evergreen species. Most global modelling efforts consider all tropical forests as a single ‘broadleaf evergreen’ functional type, but our data show that tropical species with different leaf habits display distinct temperature responses that should be included in modelling efforts. Conclusions This novel research will inform modelling efforts to quantify tropical ecosystem carbon cycling and provide more accurate representations of how these key ecosystems will respond to altered temperature patterns in the face of climate warming.

Carter, Kelsey R. [Oak Ridge National Laboratory (↗

The Natural Products Magnetic Resonance Database (NP-MRD) for 2025

The Natural Products Magnetic Resonance Database or NP-MRD (https://np-mrd.org) is a comprehensive, freely accessible, web-based resource for the deposition, distribution, extraction and retrieval of nuclear magnetic resonance (NMR) data on natural products. The NP-MRD was initially established to support compound de-replication and data dissemination for the natural products community. However, that community has now grown to include many users from the metabolomics, microbiomics, foodomics and nutrition science fields. Indeed, since its launch in 2021, the NP-MRD has expanded enormously in size, scope and popularity. The current version of NP-MRD now contains nearly 7X more compounds (281,859 vs. 40,908) and 7X more NMR spectra (5.1 million vs. 817,000) than the first release. More specifically, an additional 4.6 million predicted spectra and another 11,000 spectra simulated from experimental chemical shifts were deposited into the database. Likewise, the number of NMR raw spectral data depositions has grown from a 165 spectra per year to more than 10,000 per year. As a result of this expansion, the number of monthly webpage views has grown from 55 to 20,000 and the number of monthly visitors has increased from 7 to 2500. To address this growth and to better support the expanding needs of its diverse community of users, many additional improvements to the NP-MRD have been made. These include significant enhancements to the data submission process, important improvements to the visualization and display of NMR spectra, notable updates to the database’s spectral search utilities and useful additions to support better NMR spectral analysis/prediction. Significant efforts have also been undertaken to remediate and update many of NP-MRD’s database entries. This manuscript describes these database improvements and expansion efforts, along with how they have been implemented and what future upgrades to the NP-MRD are planned.

Artifical Intelligence↗

CD206 + Trem2 + macrophage accumulation in the murine knee joint after injury is associated with protection against post-traumatic osteoarthritis in MRL/MpJ mice

Post-traumatic osteoarthritis (PTOA) is a painful joint disease characterized by the degradation of bone, cartilage, and other connective tissues in the joint. PTOA is initiated by trauma to joint-stabilizing tissues, such as the anterior cruciate ligament, medial meniscus, or by intra-articular fractures. In humans, ~50% of joint injuries progress to PTOA, while the rest spontaneously resolve. To better understand molecular programs contributing to PTOA development or resolution, we examined injury-induced fluctuations in immune cell populations and transcriptional shifts by single-cell RNA sequencing of synovial joints in PTOA-susceptible C57BL/6J (B6) and PTOA-resistant MRL/MpJ (MRL) mice. We identified significant differences in monocyte and macrophage subpopulations between MRL and B6 joints. A potent myeloid-driven anti-inflammatory response was observed in MRL injured joints that significantly contrasted the pro-inflammatory signaling seen in B6 joints. Multiple CD206 + macrophage populations classically described as M2 were found enriched in MRL injured joints. These CD206 + macrophages also robustly expressed Trem2 , a receptor involved in inflammation and myeloid cell activation. These data suggest that the PTOA resistant MRL mouse strain displays an enhanced capacity of clearing debris and apoptotic cells induced by inflammation after injury due to an increase in activated M2 macrophages within the synovial tissue and joint space.

60 APPLIED LIFE SCIENCES↗

Gravitational Lenses in UNIONS and Euclid (GLUE). I. A Search for Strong Gravitational Lenses in UNIONS with Subaru, CFHT, and Pan-STARRS Data

We present the results of our pipeline for discovering strong gravitational lenses in the ongoing Ultraviolet Near-Infrared Optical Northern Survey (UNIONS). We successfully train a deep residual convolutional neural network based on CMU-Deeplens architecture, which is designed to detect strong lenses in ground-based imaging surveys. We train on images of real strong lenses and deploy on a sample of 8 million galaxies in areas with full coverage in the g, r, and i filters—the first multiband search for strong gravitational lenses in UNIONS. Following human inspection and grading, we report the discovery of a total of 1346 new strong-lens candidates, of which 146 are Grade A, 199 are Grade B, and 1001 are Grade C. Of these candidates, 283 have lens galaxy spectroscopic redshifts from the Sloan Digital Sky Survey, and an additional 297 have them from the Dark Energy Spectroscopic Instrument Data Release 1. We find 15 of these systems display evidence of both lens and source galaxy redshifts in spectral superposition. We also report the spectroscopic confirmation of seven lensed sources in high-quality systems, all with z > 2.1, using the Keck Near Infrared Echellette Spectrograph and the Gemini Near-Infrared Spectrograph.

Storfer, Christopher J. [University of Hawaii, Hon↗