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DOE OSTI2022

Observational window effects on multi-object reverberation mapping

ABSTRACT Contemporary reverberation mapping campaigns are employing wide-area photometric data and high-multiplex spectroscopy to efficiently monitor hundreds of active galactic nuclei (AGNs). However, the interaction of the window function(s) imposed by the observation cadence with the reverberation lag and AGN variability time-scales (intrinsic to each source over a range of luminosities) impact our ability to recover these fundamental physical properties. Time dilation effects due to the sample source redshift distribution introduce added complexity. We present comprehensive analysis of the implications of observational cadence, seasonal gaps, and campaign baseline duration (i.e. the survey window function) for reverberation lag recovery. We find that the presence of a significant seasonal gap dominates the efficacy of any given campaign strategy for lag recovery across the parameter space, particularly for those sources with observed-frame lags above 100 d. Using the Australian Dark Energy Survey as a baseline, we consider the implications of this analysis for the 4MOST/Time-Domain Extragalactic Survey campaign providing concurrent follow-up of the Legacy Survey of Space and Time deep-drilling fields, as well as upcoming programmes. We conclude that the success of such surveys will be critically limited by the seasonal visibility of some potential field choices, but show significant improvement from extending the baseline. Optimizing the sample selection to fit the window function will improve survey efficacy.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2021

Learning to identify electrons

In this report we investigate whether state-of-the-art classification features commonly used to distinguish electrons from jet backgrounds in collider experiments are overlooking valuable information. A deep convolutional neural network analysis of electromagnetic and hadronic calorimeter deposits is compared to the performance of typical features, revealing a ≈ 5% gap which indicates that these lower-level data do contain untapped classification power. To reveal the nature of this unused information, we use a recently developed technique to map the deep network into a space of physically interpretable observables. We identify two simple calorimeter observables which are not typically used for electron identification, but which mimic the decisions of the convolutional network and nearly close the performance gap.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2024

DESI Massive Poststarburst Galaxies at z ~ 1.2 Have Compact Structures and Dense Cores

Poststarburst galaxies (PSBs) are young quiescent galaxies that have recently experienced a rapid decrease in star formation, allowing us to probe the fast-quenching period of galaxy evolution. In this work, we obtained Hubble Space Telescope (HST)/WFC3 F110W imaging to measure the sizes of 171 massive (log(M $\ast$ /M ⊙ ) ~ 11) spectroscopically identified PSBs at 1 < z 1.3 selected from the DESI Survey Validation luminous red galaxy sample. This statistical sample constitutes an order of magnitude increase from the ~20 PSBs with space-based imaging and deep spectroscopy. We perform structural fitting of the target galaxies with pysersic and compare them to quiescent and star-forming galaxies in the 3D-HST survey. We find that these PSBs are more compact than the general population of quiescent galaxies, lying systematically ~0.1 dex below the established size–mass relation. However, their central surface mass densities are similar to those of their quiescent counterparts (log(Σ 1kpc /(M ⊙ kpc -2 ))~10.1). These findings are easily reconciled by later ex situ growth via minor mergers or a slight progenitor bias. These PSBs are round in projection (b/a median ~ 0.8), suggesting that they are primarily spheroids, not disks, in 3D. We find no correlation between the time since quenching and light-weighted PSB sizes or central densities. This disfavors apparent structural growth due to the fading of centralized starbursts in this galaxy population. Instead, we posit that the fast quenching of massive galaxies at this epoch occurs preferentially in galaxies with preexisting compact structures.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2022

Disentangling multiple scattering with deep learning: application to strain mapping from electron diffraction patterns

Abstract A fast, robust pipeline for strain mapping of crystalline materials is important for many technological applications. Scanning electron nanodiffraction allows us to calculate strain maps with high accuracy and spatial resolutions, but this technique is limited when the electron beam undergoes multiple scattering. Deep-learning methods have the potential to invert these complex signals, but require a large number of training examples. We implement a Fourier space, complex-valued deep-neural network, FCU-Net, to invert highly nonlinear electron diffraction patterns into the corresponding quantitative structure factor images. FCU-Net was trained using over 200,000 unique simulated dynamical diffraction patterns from different combinations of crystal structures, orientations, thicknesses, and microscope parameters, which are augmented with experimental artifacts. We evaluated FCU-Net against simulated and experimental datasets, where it substantially outperforms conventional analysis methods. Our code, models, and training library are open-source and may be adapted to different diffraction measurement problems.

36 MATERIALS SCIENCE↗

DOE OSTI2021

Tropical Cirrus in Global Storm-Resolving Models. Part II: Cirrus Life Cycle and Top-of-Atmosphere Radiative Fluxes

Cirrus clouds of various thicknesses and radiative characteristics extend over much of the tropics, especially around deep convection. They are difficult to observe due to their high altitude and sometimes small optical depths. They are also difficult to simulate in conventional global climate models, which have coarse grid spacings and simplified parameterizations of deep convection and cirrus formation. We investigate the representation of tropical cirrus in global storm-resolving models (GSRMs), which have higher spatial resolution and explicit convection and could more accurately represent cirrus cloud processes. This study uses GSRMs from the DYnamics of the Atmospheric general circulation Modeled On Non-hydrostatic Domains (DYAMOND) project. The aggregate life cycle of tropical cirrus is analyzed using joint albedo and outgoing longwave radiation (OLR) histograms to assess the fidelity of models in capturing the observed cirrus cloud populations over representative tropical ocean and land regions. The proportions of optically-thick deep convection, anvils, and cirrus vary across models and are portrayed in the vertical distribution of cloud cover and top-of-atmosphere radiative fluxes. Model differences in cirrus populations, likely driven by subgrid processes such as ice microphysics, dominate over regional differences between convectively-active tropical land and ocean locations.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Simulated Feasibility of 3-D Lightning Mapping From Space

In addition to the awe it inspires, lightning can illuminate the microphysical processes hidden away within deep convection. The current generation of space-based lightning mapping uses mostly 2-D optical imaging to connect overall flash characteristics to their parent storm dynamics, but are missing a dimension’s worth of information. With lightning now classified as an essential climate variable, future spaceborne mappers will need improved capabilities to take advantage of the 3-D structure of lightning flashes to support meteorological and climate modeling. We report here on a study of the feasibility of high-resolution 3-D lightning mapping using a radio frequency (RF)-based network of satellites from low-Earth orbit (LEO). Lightning sources are simulated using existing lightning mapping array (LMA) tools, modified for orbital detection, and spatially reconstructed using a Levenberg–Marquardt geolocation algorithm to assess sources of uncertainty in these solutions. We analyze the benefits and limitations of this approach compared to existing orbital and ground-based methods. Results of this study show that lightning can be mapped in 3-D with a vertical location accuracy better than 2 km using as few as five satellites in LEO capable of measuring the time-of-arrival of impulsive RF signals in the very high-frequency (VHF) band. The consequence of this study is that high-resolution, spaceborne 3-D mapping of lightning is achievable across most of the globe, having crucial implications for our understanding of not only lightning, but also severe weather development, climate science, and more.

47 OTHER INSTRUMENTATION↗

DOE OSTI2022

A deep learning-based direct forecasting of CO 2 plume migration

Accurate and timely forecasts of CO 2 plume evolution in geological reservoirs are crucial for CO 2 migration detection, leakage risk assessment, and operation decision support. Conventional forecasting usually adopts a two-step strategy, first calibrating reservoir model parameters against observations using iterative inverse modeling (or history matching) and then applying the calibrated model for predictions. This method impedes real-time forecasts due to the heavy computational demand in inverse modeling and may suffer from poor prediction accuracy because of the limited observation data. In this work, we propose a deep learning-based latent space mapping framework to forecast CO 2 plume migration directly by avoiding the inverse modeling. We first use the convolutional autoencoder to map the high-dimensional complex plume extents onto low-dimensional latent space. Next, we use neural networks to learn the relationship between the observation variables and the prediction latent variables. And then for given observation data, we infer the prediction values directly. This one-step direct forecasting is computationally efficient which requires a few number of parallelizable reservoir simulations and it can provide accurate predictions with limited observations by learning the observation-prediction relationship in the reduced dimension. Therefore, our proposed method enables an in-time forecast of dynamic CO 2 plume distributions. In this work, we demonstrate the effectiveness and accuracy of our method in predicting the CO 2 plume migration using four metrics such as plume area, centroid movement distance, and plume spreading in the primary and secondary directions. And the spatio-temporal evolution patterns of plume migration under diverse geological complexities are also accurately quantified.

15 GEOTHERMAL ENERGY↗

DOE OSTI2024

Invertible Temper Modeling using Normalizing Flows and the Effects of Structure Preserving Loss

Advanced manufacturing research and development is typically small-scale, owing to costly experiments associated with these novel processes. Deep learning techniques could help accelerate this development cycle but frequently struggle in small-data regimes like the advanced manufacturing space. While prior work has applied deep learning to modeling visually plausible advanced manufacturing microstructures, little work has been done on data-driven modeling of how microstructures are affected by heat treatment, or assessing the degree to which synthetic microstructures are able to support existing workflows. We propose to address this gap by using invertible neural networks (normalizing flows) to model the effects of heat treatment, e.g., tempering. The model is developed using scanning electron microscope imagery from samples produced using shear-assisted processing and extrusion (ShAPE) manufacturing. This approach not only produces visually and topologically plausible samples, but also captures information related to a sample’s material properties or experimental process parameters. We also demonstrate that topological data analysis, used in prior work to characterize microstructures, can also be used to stabilize model training, preserve structure, and improve downstream results. We assess directions for future work and identify our approach as an important step towards end-to-end deep learning system for accelerating advanced manufacturing research and development.

Howland, Sylvia↗

DOE OSTI2026

Accelerating Traction Motor Optimization Design with AI Surrogate Models

The advancement of artificial intelligence systems enables the use of data-driven physics-based surrogate models to explore design spaces rapidly and deeply for engineering projects. This work presents a surrogate model workflow that accelerates electric traction motor design optimization by replacing finite element analysis (FEA) with an artificial neural network (ANN) and using this model in a genetic algorithm for design optimization. A baseline interior permanent-magnet motor is parameterized and sampled to generate FEA-labeled training data, after which a feed-forward ANN predicts key outputs (e.g., loss components and weight). The validated surrogate enables genetic-algorithm optimization and deep search over the design space without new FEA runs, producing Pareto-optimal trade-offs between weight and losses and set of optimized designs for rapid downselection of manufacturable motor designs.

Ribeiro, Pedro [ORNL] (ORCID:0009000921026641)↗

DOE OSTI2022

Geometric prior of multi-resolution yielding manifolds and the local closest point projection for nearly non-smooth plasticity

Elastoplasticity models often introduce a scalar-valued yield function to implicitly represent the boundary between elastic and plastic material states. Here this paper introduces a new alternative where the yield envelope is represented by a manifold of which the topology and the geometry are learned from a set of data points in a parametric space (e.g. principal stress space, π-plane). Here, deep geometric learning enables us to reconstruct a highly complex yield envelope by breaking it down into multiple coordinate charts. The global atlas that consists of these coordinate charts in return allows us to represent the yield surface via multiple overlapping patches, each with a specific local parametrization. This setup provides several advantages over the classical implicit function representation approach. For instance, the availability of coordinate charts enables us to introduce an alternative stress integration algorithm where the trial stress may project directly on a local patch and hence circumvent the issues related to non-smoothness and the lack of convexity of yield surfaces. Meanwhile, the local parametric approach also enables us to predict hardening/softening locally in the parametric space, even without complete knowledge of the yield surface. Comparisons between the classical yield function approach on the non-smooth plasticity and anisotropic cam-clay plasticity model are provided to demonstrate the capacity of the models for highly precise yield surface and the feasibility of the implementation of the learned model in the local stress integration algorithm.

42 ENGINEERING↗

DOE OSTI2020

A Baseline for Global Weather and Climate Simulations at 1 km Resolution

In an attempt to advance the understanding of the Earth's weather and climate by representing deep convection explicitly, we present a global, four-month simulation (November 2018 to February 2019) with ECMWF's hydrostatic Integrated Forecasting System (IFS) at an average grid spacing of 1.4 km. The impact of explicitly simulating deep convection on the atmospheric circulation and its variability is assessed by comparing the 1.4 km simulation to the equivalent well-tested and calibrated global simulations at 9 km grid spacing with and without parametrized deep convection. The explicit simulation of deep convection at 1.4 km results in a realistic large-scale circulation, better representation of convective storm activity, and stronger convective gravity wave activity when compared to the 9 km simulation with parametrized deep convection. Comparison of the 1.4 km simulation to the 9 km simulation without parametrized deep convection shows that switching off deep convection parametrization at a too coarse resolution (i.e., 9 km) generates too strong convective gravity waves. Based on the limited statistics available, improvements to the Madden-Julian Oscillation or tropical precipitation are not observed at 1.4 km, suggesting that other Earth system model components and/or their interaction are important for an accurate representation of these processes and may well need adjusting at deep convection resolving resolutions. Overall, the good agreement of the 1.4 km simulation with the 9 km simulation with parametrized deep convection is remarkable, despite one of the most fundamental parametrizations being turned off at 1.4 km resolution and despite no adjustments being made to the remaining parametrizations.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Orthogonal glycolytic pathway enables directed evolution of noncanonical cofactor oxidase

Abstract Noncanonical cofactor biomimetics (NCBs) such as nicotinamide mononucleotide (NMN + ) provide enhanced scalability for biomanufacturing. However, engineering enzymes to accept NCBs is difficult. Here, we establish a growth selection platform to evolve enzymes to utilize NMN + -based reducing power. This is based on an orthogonal, NMN + -dependent glycolytic pathway in Escherichia coli which can be coupled to any reciprocal enzyme to recycle the ensuing reduced NMN + . With a throughput of >10 6 variants per iteration, the growth selection discovers a Lactobacillus pentosus NADH oxidase variant with ~10-fold increase in NMNH catalytic efficiency and enhanced activity for other NCBs. Molecular modeling and experimental validation suggest that instead of directly contacting NCBs, the mutations optimize the enzyme’s global conformational dynamics to resemble the WT with the native cofactor bound. Restoring the enzyme’s access to catalytically competent conformation states via deep navigation of protein sequence space with high-throughput evolution provides a universal route to engineer NCB-dependent enzymes.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Fast uncertainty estimates in deep learning interatomic potentials

Deep learning has emerged as a promising paradigm to give access to highly accurate predictions of molecular and material properties. A common short-coming shared by current approaches, however, is that neural networks only give point estimates of their predictions and do not come with predictive uncertainties associated with these estimates. Existing uncertainty quantification efforts have primarily leveraged the standard deviation of predictions across an ensemble of independently trained neural networks. This incurs a large computational overhead in both training and prediction, resulting in order-of-magnitude more expensive predictions. Here, we propose a method to estimate the predictive uncertainty based on a single neural network without the need for an ensemble. This allows us to obtain uncertainty estimates with virtually no additional computational overhead over standard training and inference. We demonstrate that the quality of the uncertainty estimates matches those obtained from deep ensembles. We further examine the uncertainty estimates of our methods and deep ensembles across the configuration space of our test system and compare the uncertainties to the potential energy surface. Finally, we study the efficacy of the method in an active learning setting and find the results to match an ensemble-based strategy at order-of-magnitude reduced computational cost.

Chemistry↗

DOE OSTI2022

CLEAR: The Ionization and Chemical-enrichment Properties of Galaxies at 1.1 < z < 2.3

We use deep spectroscopy from the Hubble Space Telescope Wide-Field-Camera 3 IR grisms combined with broadband photometry to study the stellar populations, gas ionization and chemical abundances in star-forming galaxies at z ~ 1.1–2.3. The data stem from the CANDELS Lyα Emission At Reionization (CLEAR) survey. At these redshifts, the grism spectroscopy measure the [O II] λλ3727, 3729, [O III]λλ4959, 5008, and Hβ strong emission features, which constrain the ionization parameter and oxygen abundance of the nebular gas. We compare the line-flux measurements to predictions from updated photoionization models (MAPPINGS V; Kewley et al.), which include an updated treatment of nebular gas pressure, $\mathrm{log}P/k={n}_{e}{T}_{e}$. Compared to low-redshift samples (z ~ 0.2) at fixed stellar mass, $\mathrm{log}{M}_{* }/{M}_{\odot }\,=$ 9.4–9.8, the CLEAR galaxies at z = 1.35 (1.90) have lower gas-phase metallicity, ${\rm{\Delta }}(\mathrm{log}Z)$ = 0.25 (0.35) dex, and higher ionization parameters, ${\rm{\Delta }}(\mathrm{log}q)$ = 0.25 (0.35) dex, where U ≡ q/c. We provide updated analytic calibrations between the [O III], [O II], and Hβ emission-line ratios, metallicity, and ionization parameter. The CLEAR galaxies show that at fixed stellar mass, the gas ionization parameter is correlated with the galaxy specific star formation rates, where ${\rm{\Delta }}\mathrm{log}q\simeq 0.4\times {\rm{\Delta }}(\mathrm{log}\,\mathrm{sSFR})$, derived from changes in the strength of galaxy Hβ equivalent width. We interpret this as a consequence of higher gas densities, lower gas covering fractions, combined with a higher escape fraction of H-ionizing photons. We discuss both tests to confirm these assertions and implications this has for future observations of galaxies at higher redshifts.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2025

Exploring the energy landscape of RBMs: reciprocal space insights into bosons, hierarchical learning and symmetry breaking

Deep generative models have become ubiquitous due to their ability to learn and sample from complex distributions. Despite the proliferation of various frameworks, the relationships among these models remain largely unexplored, a gap that hinders the development of a unified theory of AI learning. In this work, we address two central challenges: clarifying the connections between different deep generative models and deepening our understanding of their learning mechanisms. We focus on Restricted Boltzmann Machines (RBMs), a class of generative models known for their universal approximation capabilities for discrete distributions. By introducing a reciprocal space formulation for RBMs, we reveal a connection between these models, diffusion processes, and systems of coupled bosons. Our analysis shows that at initialization, the RBM operates at a saddle point, where the local curvature is determined by the singular values of the weight matrix, whose distribution follows the Marc̆enko-Pastur law and exhibits rotational symmetry. During training, this rotational symmetry is broken due to hierarchical learning, where different degrees of freedom progressively capture features at multiple levels of abstraction. This leads to a symmetry breaking in the energy landscape, reminiscent of Landau’s theory. This symmetry breaking in the energy landscape is characterized by the singular values and the weight matrix eigenvector matrix. We derive the corresponding free energy in a mean-field approximation. We show that in the limit of infinite size RBM, the reciprocal variables are Gaussian distributed. Our findings indicate that in this regime, there will be some modes for which the diffusion process will not converge to the Boltzmann distribution. To illustrate our results, we trained replicas of RBMs with different hidden layer sizes using the MNIST dataset. Our findings not only bridge the gap between disparate generative frameworks but also shed light on the fundamental processes underpinning learning in deep generative models.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2024

Streamlining latent spaces in machine learning using moment pooling

Many machine learning applications involve learning a latent representation of data, which is often high-dimensional and difficult to directly interpret. In this work, we propose “moment pooling,” a natural extension of deep sets networks which drastically decreases the latent space dimensionality of these networks while maintaining or even improving performance. Moment pooling generalizes the summation in deep sets to arbitrary multivariate moments, which enables the model to achieve a much higher effective latent dimensionality for a fixed learned latent space dimension. We demonstrate moment pooling on the collider physics task of quark/gluon jet classification by extending energy flow networks (EFNs) to moment EFNs. We find that moment EFNs with latent dimensions as small as 1 perform similarly to ordinary EFNs with higher latent dimension. This small latent dimension allows for the internal representation to be directly visualized and interpreted, which in turn enables the learned internal jet representation to be extracted in closed form. Published by the American Physical Society 2024

Gambhir, Rikab (ORCID:0000000251080448)↗

DOE OSTI2026

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements

Cryo-electron tomography (cryo-ET) has emerged as the preferred technique for visualizing the organization of macromolecular complexes in situ and resolving their structures at subnanometre resolution [Tegunov et al. (2021)View full citation, Nat. Methods, 18, 186–193]. Despite improvements in data quality as a result of advances in detector technology, microscope stability and stage precision, the analysis and interpretation of tomograms remains challenging due to a low signal-to-noise ratio and reconstruction artifacts stemming from experimental constraints in specimen tilt during data collection resulting in a missing wedge in the Fourier space. Recently, self-supervised deep-learning methods have been proposed for contrast enhancement and reduction of resolution anisotropy in reconstructed tomograms. Here, we evaluate several state-of-the-art deep-learning methods which aim to improve the interpretability of cryo-ET reconstructions, with a focus on their performance on downstream tasks of template matching, subtomogram averaging and segmentation. We propose new training architectures and a loss function based on Fourier shell correlation that show improved performance over the standard U-Net with L1/L2 losses. We demonstrate our analysis on four diverse experimental datasets: purified 80S ribosomes, in situ Chlamydomonas reinhardtii, immature HIV-1 virus-like particles and INS-1E cells.

contrast enhancement↗

DOE OSTI2025

On the Dependence of Simulated Convection on Domain Size in CRMs

Abstract We present a heuristic model to explain the suppression of deep convection in convection‐resolving models (CRMs) with a small number of grid columns, such as those used in super‐parameterized or multi‐scale modeling framework (MMF) general circulation models (GCM) of the atmosphere. Domains with few grid columns require greater instability to sustain convection because they force a large convective fraction, driving strong compensating subsidence warming. Updraft dilution, which is stronger for reduced horizontal grid spacing, enhances this effect. Thus, suppression of deep convection in CRMs with few grid columns can be reduced by increasing grid spacing. Radiative‐convective equilibrium simulations using standalone CRM simulations with the System for Atmospheric Modeling (SAM) and using GCM‐coupled CRM simulations with the Energy Exascale Earth System Model (E3SM)‐MMF confirm the heuristic model results.

CRM↗