Image Compression: Sparse Coding vs. Bottleneck Autoencoders
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Computer Science↗
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Hard x ray imaging graphics development and literature search
This report presents work performed between June 1990 and June 1991 and has the following objectives: (1) a comprehensive literature search of imaging technology and coded aperture imaging as well as relevant topics relating to solar flares; (2) an analysis of random number generators; and (3) programming simulation models of hard x ray telescopes. All programs are compatible with NASA/MSFC Space Science LAboratory VAX Cluster and are written in VAX FORTRAN and VAX IDL (Interactive Data Language).
Emslie, A. Gordon↗
Image Compression: Sparse Coding vs. Bottleneck Autoencoders
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Computer Science↗
SU-C-201-03: Coded Aperture Gamma-Ray Imaging Using Pixelated Semiconductor Detectors
Purpose: Improved localization of gamma-ray emissions from radiotracers is essential to the progress of nuclear medicine. Polaris is a portable, room-temperature operated gamma-ray imaging spectrometer composed of two 3×3 arrays of thick CdZnTe (CZT) detectors, which detect gammas between 30keV and 3MeV with energy resolution of <1% FWHM at 662keV. Compton imaging is used to map out source distributions in 4-pi space; however, is only effective above 300keV where Compton scatter is dominant. This work extends imaging to photoelectric energies (<300keV) using coded aperture imaging (CAI), which is essential for localization of Tc-99m (140keV). Methods: CAI, similar to the pinhole camera, relies on an attenuating mask, with open/closed elements, placed between the source and position-sensitive detectors. Partial attenuation of the source results in a “shadow” or count distribution that closely matches a portion of the mask pattern. Ideally, each source direction corresponds to a unique count distribution. Using backprojection reconstruction, the source direction is determined within the field of view. The knowledge of 3D position of interaction results in improved image quality. Results: Using a single array of detectors, a coded aperture mask, and multiple Co-57 (122keV) point sources, image reconstruction is performed in real-time, on an event-by-event basis, resulting in images with an angular resolution of ∼6 degrees. Although material nonuniformities contribute to image degradation, the superposition of images from individual detectors results in improved SNR. CAI was integrated with Compton imaging for a seamless transition between energy regimes. Conclusion: For the first time, CAI has been applied to thick, 3D position sensitive CZT detectors. Real-time, combined CAI and Compton imaging is performed using two 3×3 detector arrays, resulting in a source distribution in space. This system has been commercialized by H3D, Inc. and is being acquired for various applications worldwide, including proton therapy imaging R&D.
60 APPLIED LIFE SCIENCES↗
A First Look at WAMS Data via the Read Code [PowerPoint]
Images are provided showing various aspects using the MATLAB Reading Code.
97 MATHEMATICS AND COMPUTING↗
Comparison of thermionic filament and carbon nanotube field emitter-based electron ionization sources in cycloidal coded aperture mass analyzers
This report compares the coded aperture imaging performance of thermionic filament and carbon nanotube (CNT) field emitter-based electron sources in cycloidal-coded aperture mass spectrometers. The use of spatially coded apertures in mass spectrometry enables miniaturization by improving throughput without sacrificing resolution. CNT-based electron ionization sources for mass spectrometers provide several potential benefits over conventional thermionic emitters, including low voltage and low power consumption, room temperature operation, long lifetime, and ability to emit electrons in a pulsed mode. However, spatiotemporal variation in electron emission from CNTs is a major disadvantage. In this study, electron emission stability and spatiotemporal stability of the coded aperture image were compared for coded aperture cycloidal mass analyzers with either a CNT-based ion source or a thermionic filament-based ion source. We found that the thermionic filament-based ion source produced a significantly more stable coded aperture image than the CNT based ion source. The aperture image fluctuations in the CNT-based source are likely a result of adsorption and desorption of molecules on the CNT surface that cause local work function changes and induce spatiotemporal variation in electron emission and subsequent ion generation.
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
Skylab S-192 ratio codes of soil, mineral, and rock spectra for ratio image selection and interpretation
A limited theoretical systems study is made of the Skylab S-192 12-channel multispectral scanner's capabilities for geological remote sensing. Laboratory spectra of rocks, minerals, soils, and some vegetation were used to rank the twelve channels and the best twelve of the 66 possible nonreciprocal spectral ratios according to their ability to discriminate among 17 classes of geological targets. Environmental and instrumental noise sources were ignored. The S-192 should be most useful for discriminating minerals deposited by hydrothermal alteration, weathering, and evaporation. Discrimination of igneous rocks will be difficult. Ratio images are recommended over automatic discrimination methods for those geological targets that can be enhanced by ratio imaging. Ratio codes were found for the twelve highest ranked ratios, for use in selecting the ratio images which will best enhance a target of interest. They can also be searched for false alarm candidates for a given target.
Vincent, R. K.↗
Improved image decompression for reduced transform coding artifacts
The perceived quality of images reconstructed from low bit rate compression is severely degraded by the appearance of transform coding artifacts. This paper proposes a method for producing higher quality reconstructed images based on a stochastic model for the image data. Quantization (scalar or vector) partitions the transform coefficient space and maps all points in a partition cell to a representative reconstruction point, usually taken as the centroid of the cell. The proposed image estimation technique selects the reconstruction point within the quantization partition cell which results in a reconstructed image which best fits a non-Gaussian Markov random field (MRF) image model. This approach results in a convex constrained optimization problem which can be solved iteratively. At each iteration, the gradient projection method is used to update the estimate based on the image model. In the transform domain, the resulting coefficient reconstruction points are projected to the particular quantization partition cells defined by the compressed image. Experimental results will be shown for images compressed using scalar quantization of block DCT and using vector quantization of subband wavelet transform. The proposed image decompression provides a reconstructed image with reduced visibility of transform coding artifacts and superior perceived quality.
Orourke, Thomas P.↗
Visual communication - Information and fidelity
This assessment of visual communication deals with image gathering, coding, and restoration as a whole rather than as separate and independent tasks. The approach focuses on two mathematical criteria, information and fidelity, and on their relationships to the entropy of the encoded data and to the visual quality of the restored image. Past applications of these criteria to the assessment of image coding and restoration have been limited to the link that connects the output of the image-gathering device to the input of the image-display device. By contrast, the approach presented in this paper explicitly includes the critical limiting factors that constrain image gathering and display. This extension leads to an end-to-end assessment theory of visual communication that combines optical design with digital processing.
Huck, Freidrich O.↗
Quantification of LEU Holdup using gamma ray imaging and inverse transport solver
Holdup is the residual amount of special nuclear material (SNM) remaining in a processing facility after the bulk materials have been cleaned out. In commercial uranium processing facilities, quantification of holdup is a major challenge because of the highly variable shapes and sizes of the deposits. Any method that attempts to generalize and calibrate deposit shapes in order to quantify holdup will be prone to high uncertainties. Uncertainties on the order of ±50% are typical in holdup results. In international safeguards applications, a ±50% uncertainty can result in a large amount of material unaccounted for (MUF) thereby increasing the difficulty of detecting material diversion and facility misuse. An imaging-based methodology has been developed with the objective of significantly reducing this uncertainty by using the true deposit shape, instead of relying on oversimplified geometric assumptions. The project is a collaboration between ORNL, Y-12, and the University of Tennessee, Knoxville, TN. Uranium sources of known masses were measured using the Germanium Gamma-ray Imager (GeGI), a high-resolution imaging spectrometer, creating a pixelated map for each spectral bin. Two different gamma imaging methods are employed in this work: coded aperture imaging and Compton imaging. A validated MonteCarlo model of the detector has been developed using the GEANT4 code for determining the intrinsic response of the detector, its enclosure, and the coded aperture mask. An inverse transport solver based on the Markov Chain Monte-Carlo approach known as Differential Evolution Adaptive Metropolis (DREAM) is employed to use the measurement data from the image pixels (coded aperture or Compton) to solve for the mass of 235 U in the deposit. A reliable method based on the DREAM solver has been developed to flag the infinite thickness condition of a uranium deposit. The project team is working towards improving the image reconstruction for Compton imaging so that a better localization of the source can be achieved. Besides treating the coded aperture and Compton imaging methods independently, the project is also evaluating a combined method that uses the Compton scatter data from a coded aperture measurement. GEANT4 simulations are being performed to evaluate the combined approach. The impact on the DREAM optimization as the source thickness progressively approaches infinite thickness is being evaluated. A number of uranium sources available at ORNL have been measured, and the DREAM results have been tested and validated for the coded aperture imaging. A similar effort will be carried out to validate the Compton based method once the development of algorithms for better localization are complete. The imaging based quantification is very amenable to unattended monitoring of holdup accumulation at key measurement points. A proof of concept measurement has been completed to demonstrate this capability The current work used the high energy resolution imager GeGI. However, the approach and methodologies are applicable to other imagers such as the cadmium zin telluride (CZT) based imager manufactured by H3D, Inc.
11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
Real-time Free-moving Active Coded Mask 3D Gamma-Ray Imaging
The ability to localize and map the distribution of gamma-ray emitting radionuclides in 3D has applications ranging from medical imaging to nuclear security. In the case of radiological source search and nuclear contamination remediation, the deployment of freely moving detection systems such as hand- held instruments or ground/aerial-based vehicles are critical in overcoming the inverse square law and complex shielding scenarios. Using contextual sensors, these systems can simultaneously generate 3D maps of the surrounding environment and track the position and orientation of the gamma-ray sensitive detectors in that environment. The fusion of contextual scene data and gamma-ray detector data to facilitate real-time 3D gamma-ray image reconstruction has been demonstrated with mobile HPGe and CdZnTe-based Compton cameras for gamma-ray energies ranging from a few hundred keV to several MeV. Here we apply this approach for lower energy (50-400 keV) gamma-rays, using a hand-held CdZnTe-based omnidirectional imaging system and an active coded mask imaging modality. Here, we present our approach to real-time reconstruction using a scene data constrained GPU- accelerated list-mode MLEM algorithm and show results from several measurements in the lab and in the field.
3D gamma-ray imaging↗
TORT3D: A MATLAB code to compute geometric tortuosity from 3D images of unconsolidated porous media
Not Available
Al-Raoush, Riyadh I.↗
Computational models of direct and indirect X‐ray breast imaging detectors for in silico trials
Abstract Background To facilitate in silico studies that investigate digital mammography (DM) and breast tomosynthesis (DBT), models replicating the variety in imaging performance of the DM and DBT systems, observed across manufacturers are needed. Purpose The main purpose of this work is to develop generic physics models for direct and indirect detector technology used in commercially available systems, with the goal of making them available open source to manufacturers to further tweak and develop the exact in silico replicas of their systems. Methods We recently reported on an in silico version of the SIEMENS Mammomat Inspiration DM/DBT system using an open‐source GPU‐accelerated Monte Carlo x‐ray imaging simulation code (MC‐GPU). We build on the previous version of the MC‐GPU codes to mimic the imaging performances of two other Food and Drug Administration (FDA)‐approved DM/DBT systems, such as Hologic Selenia Dimensions (HSD) and the General Electric Senographe Pristina (GSP) systems. In this work, we developed a hybrid technique to model the optical spread and signal crosstalk observed in the GSP and HSD systems. MC simulations are used to track each x‐ray photon till its first interaction within the x‐ray detector. On the other hand, the signal spread in the x‐ray detectors is modeled using previously developed analytical equations. This approach allows us to preserve the modeling accuracy offered by MC methods in the patient body, while speeding up secondary carrier transport (either electron–hole pairs or optical photons) using analytical equations in the detector. The analytical optical spread model for the indirect detector includes the depth‐dependent spread and collection of optical photons and relies on a pre‐computed set of point response functions that describe the optical spread as a function of depth. To understand the capabilities of the computational x‐ray detector models, we compared image quality metrics like modulation transfer function (MTF), normalized noise power spectrum (NNPS), and detective quantum efficiency (DQE), simulated with our models against measured data. Please note that the purpose of these comparisons with measured data would be to gauge if the model developed as part of this work could replicate commercially used direct and indirect technology in general and not to achieve perfect fits with measured data. Results We found that the simulated image quality metrics such as MTF, NNPS, and DQE were in reasonable agreement with experimental data. To demonstrate the imaging performance of the three DM/DBT systems, we integrated the detector models with the VICTRE pipeline and simulated DM images of a fatty breast model containing a spiculated mass and a calcium oxalate cluster. In general, we found that the images generated using the indirect model appeared more blurred with a different noise texture and contrast as compared to the systems with direct detectors. Conclusions We have presented computational models of three commercially available FDA‐approved DM/DBT systems, which implement both direct and indirect detector technology. The updated versions of the MC‐GPU codes that can be used to replicate three systems are available in open source format through GitHub.
Sengupta, Aunnasha↗
Development of GPU-based Monte Carlo code for fast CT imaging dose calculation on CUDA Fermi architecture
This paper describes the development of a Graphics Processing Unit (GPU) accelerated Monte Carlo photon transport code, ARCHER{sub GPU}, to perform CT imaging dose calculations with good accuracy and performance. The code simulates interactions of photons with heterogeneous materials. It contains a detailed CT scanner model and a family of patient phantoms. Several techniques are used to optimize the code for the GPU architecture. In the accuracy and performance test, a 142 kg adult male phantom was selected, and the CT scan protocol involved a whole-body axial scan, 20-mm x-ray beam collimation, 120 kVp and a pitch of 1. A total of 9 x 108 photons were simulated and the absorbed doses to 28 radiosensitive organs/tissues were calculated. The average percentage difference of the results obtained by the general-purpose production code MCNPX and ARCHER{sub GPU} was found to be less than 0.38%, indicating an excellent agreement. The total computation time was found to be 8,689, 139 and 56 minutes for MCNPX, ARCHER{sub CPU} (6-core) and ARCHER{sub GPU}, respectively, indicating a decent speedup. Under a recent grant funding from the NIH, the project aims at developing a Monte Carlo code with the capability of sub-minute CT organ dose calculations. (authors)
61 RADIATION PROTECTION AND DOSIMETRY↗
Low bit rate coding of Earth science images
In this paper, the authors discuss compression based on some new ideas in vector quantization and their incorporation in a sub-band coding framework. Several variations are considered, which collectively address many of the individual compression needs within the earth science community. The approach taken in this work is based on some recent advances in the area of variable rate residual vector quantization (RVQ). This new RVQ method is considered separately and in conjunction with sub-band image decomposition. Very good results are achieved in coding a variety of earth science images. The last section of the paper provides some comparisons that illustrate the improvement in performance attributable to this approach relative the the JPEG coding standard.
Kossentini, Faouzi↗
Out of distribution evaluation for neural image compression
Official code for the NeurIPS 2023 paper "Neural Image Compression: Generalization, Robustness, and Spectral Biases". This code can be used to: - Computing spectral distortion errors of images compressed with traditional codes or neural image compression models (as proposed in the aformentioned paper) - Visualize power spectral densities and fourier heatmaps (as proposed in the aformentioned paper) - Train and test a variety of neural image compression models
Lieberman, KelseyA↗
Estimation of Aerosol Optical Depth, Pressure Elevation, Water Vapor and Calculation of Apparent Surface Reflectance from Radiance Measured by the Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) Using a Radiative Transfer Code
The Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) is an imaging spectrometer that measures spatial images of the total up welling spectral radiance from 400 to 2500 nm at 10 nm spectral intervals. Quantitiative research and application objectives for surface investigations require conversion of the measured radiance to surface reflectance or surface leaving radiance. In this paper we describe a set of algorithms to estimate aerosol optical depth, atmospheric water vapor, and surface pressure height from the AVIRIS measured radiance.
infrared↗
Quantitative Holdup Determinations Using Coded-Aperture Gamma-Ray Imaging
Passive gamma-ray imaging can be used to create images of distributed nuclear materials. Inherently quantitative, the images provide a means to directly determine the amount of nuclear material in the imager’s field of view. However, to take advantage of quantitative imaging, one must correct for changes to the imager’s efficiency across the image. This paper presents work on detailed calibration of a coded-aperture imager based on a portable, mechanically cooled, high-purity germanium detector. This enables the use of gamma-ray imaging as a tool to determine nuclear holdup. By applying the calibrations to images of small amounts of distributed 235U, quantity estimates within a few percent of the actual amounts present were obtained, validating the approach.
Ziock, Klaus-Peter↗