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At least 163 records · Page 9

NGEE Arctic Integrated Modeling (IM3): Improved snow-vegetation interaction

This data product represents the integration of new code capability for arctic tundra snow-vegetation-terrain interactions into the Energy Exascale Earth System Model (E3SM), through the E3SM Land Model (ELM) component. This code integration is the result of collaborative effort between the NGEE Arctic project and the E3SM project. The NGEE Arctic project developed a total of six Integrated Modeling (IM) modules informed by observations and experiments. New ELM capability represented by this data product (IM3) falls into three categories: 1) Downscaling from gridcell to topographic unit level when working through the existing coupler bypass code. 2) Four new parameters (taper, stocking, bendresist, and vegshape) have been added to ELM to allow for flexible definition of snow-vegetation interactions. 3) Vegshape and bendresist parameters are used to calculate the fraction of leaf area and/or stem area buried by snow for a given snow depth. This data record consists of a single document (pdf format) that describes the theoretical basis for the snow-vegetation-terrain interactions added to ELM, and describes the modifications made to the ELM code. The Methods section of this metadata record includes a link to the public E3SM code repository where the exact code modifications as integrated in E3SM can be accessed. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

Thornton, Peter E [ORNL] (ORCID:0000000247595158)↗

A Vision for Co-optimized T&D System Interaction with Renewables and Demand Response

The evolution of the power system to the reliable, effi- cient and sustainable system of the future will involve development of both demand- and supply-side technology and operations. The use of demand response to counterbalance the intermittency of re- newable generation brings the consumer into the spotlight. Though individual consumers are interconnected at the low-voltage distri- bution system, these resources are typically modeled as variables at the transmission network level. In this paper, a vision for co- optimized interaction of distribution systems, or microgrids, with the high-voltage transmission system is described. In this frame- work, microgrids encompass consumers, distributed renewables and storage. The energy management system of the microgrid can also sell (buy) excess (necessary) energy from the transmission system. Preliminary work explores price mechanisms to manage the microgrid and its interactions with the transmission system. Wholesale market operations are addressed through the devel- opment of scalable stochastic optimization methods that provide the ability to co-optimize interactions between the transmission and distribution systems. Modeling challenges of the co-optimization are addressed via solution methods for large-scale stochastic op- timization, including decomposition and stochastic dual dynamic programming.

14 SOLAR ENERGY↗

Reducing Propulsion Airframe Aeroacoustic Interactions With Uniquely Tailored Chevrons: 3. Jet-Flap Interaction

Propulsion airframe aeroacoustic (PAA) interactions, resulting from the integration of engine and airframe, lead to azimuthal asymmetries in the flow/acoustic field, e.g., due to the interaction between the exhaust jet flow and the pylon, the wing and its high-lift devices, such as, flaps and flaperons. In the first two parts of this series we have presented experimental results which show that isolated and installed nozzles with azimuthally varying chevrons (AVCs) can reduce noise more than conventional chevrons when integrated with a pylon and a wing with flaps at take-off conditions. In this paper, we present model-scale experimental results for the reduction of jet-flap interaction noise source due to these AVCs and document the PAA installation effects (difference in noise between installed and isolated nozzle configurations) at both approach and take-off conditions. It is found that the installation effects of both types of chevron nozzles, AVCs and conventional, are reversed at approach and take-off, in that there is more installed noise reduction at approach and less at take-off compared to that of the isolated nozzles. Moreover, certain AVCs give larger total installed noise benefits at both conditions compared to conventional chevrons. Phased microphone array results show that at approach conditions (large flap deflection, low jet speed and low ambient Mach number), chevrons gain more noise benefit from reducing jetflap interaction noise than they do from quieting the jet plume noise source which is already weak at these low jet speeds. In contrast, at take-off (small flap deflection, high jet speed and high ambient Mach number) chevrons reduce the dominant jet plume noise better than the reduction they create in jet-flap interaction noise source. In addition, fan AVCs with enhanced mixing near the pylon are found to reduce jet-flap interaction noise better than conventional chevrons at take-off.

Thomas, Russ H.↗

Isolation of three B-box zinc finger proteins that interact with STF1 and COP1 defines a HY5/COP1 interaction network involved in light control of development in soybean

LONG HYPOCOTYL5 (HY5) and STF1 (Soybean TGACG-motif binding Factor 1) are two related bZIP transcription factors that play a positive role in photomorphogenesis and hormonal signaling. In this study, we compared full length STF1 and truncated STF1 overexpression lines and found that the C-terminal 133 amino acids (194–306) possess all the HY5-like function in Arabidopsis. The STF1-DC1 mutant (1–306), with a 20 amino acid deletion at the carboxy terminus, failed to complement the hy5 mutant phenotype, which suggests an intact C-terminus is required for STF1 function. To understand the role of the C-terminal domain in photomorphogenesis we used a yeast two-hybrid screen to isolate proteins that bind to the STF1 C-terminus. We isolated three soybean cDNAs encoding the zinc-finger proteins GmSTO, GmSTH, and GmSTH2, which interact with STF1. These proteins belong to a family of B-box zinc finger proteins that include Arabidopsis SALT TOLERANCE (STO) and STO HOMOLOG (STH) and STH2, which play a role in light-dependent development and gene expression. The C-terminal 63 amino acids of STF1, containing a leucine zipper and the two N-terminal B-boxes, contains the domain involved in interactions between STF1 and GmSTO. In addition, we identified an interaction between soybean COP1 (GmCOP1) and GmSTO and GmSTH, as well as STF1, which strongly suggests the presence of a similar regulatory circuit for light signaling in soybean as in Arabidopsis. This study shows that photomorphogenic control requires complex molecular interactions among several different classes of transcription factors such as bZIP, B-box factors, and COP1, a ubiquitin ligase. - Highlights: • STF1 interact with GmSTO, GmSTH and GmSTH2. • The bZIP transcription factor STF1 requires an intact C-terminal domain for STF1 function. • STF1 and GmSTO are nuclear proteins.

60 APPLIED LIFE SCIENCES↗

Microbe-iron interactions control lignin decomposition in soil

Lignin decomposition is critically linked to terrestrial carbon (C) cycle due to the enormous C mass of lignin and its importance in controlling overall rates of litter decomposition. Interactions between lignin and iron (Fe) minerals have been increasingly recognized as key mediators of lignin decomposition in experimental studies. However, we still lack a quantitative understanding of how Fe minerals interact with microbes to control lignin decomposition. Here, we leveraged experimental results from an incubation of Fe-rich soil, in which lignin decomposition rates were measured at aerobic conditions after four levels of pre-treated O2 availability, to examine microbe-Fe (MiFe) interactions in lignin decomposition with a MiFe model. We quantified how Fe redox cycling interacted with microbial activities to control lignin decomposition via data-model integration. Our results showed that the MiFe model with time-dependent growth and mortality functions better represented CO2 release from lignin decomposition (R2 ranging from 0.96 to 0.97) than models assuming either first-order or Michaelis-Menten kinetics. Reduction of Fe(III) to Fe(II) after pre-treatments with lower O2 availability stimu-lated the Fenton reaction to break down macro-molecular lignin into small molecules available to microbes. The small molecules of lignin and necromass bounded with oxidized Fe and were protected from decomposition. After 1-year incubation, the model implied that most of C stabilized with Fe minerals was derived from small molecular lignin C. Our quantitative analysis of microbe-Fe interactions sheds new light on lignin decomposition and preservation and helps improve model prediction of soil C persistence under global change.

Liao, Cuijuan↗

Study of the Interaction between Silica Surfaces and the Carbon Dioxide Molecule

Three sphere packing (SP) and three particle packing (PP) silica xerogels, two silica aerogels (AERs), one all-silica mesoporous molecular sieve (MMS), one all-silica molecular sieve (MS), two high Si/Al relation molecular sieves, and an extremely high Si/Al relation molecular sieve were carefully studied with SEM, TGA, SAXS, DRIFTS, and adsorption of nitrogen at 77 K and carbon dioxide at 273 K. Our study of different amorphous, ordered, and crystalline silicas, applying numerous powerful and complementary experimental methods and a proper theoretical methodology, is, by itself, an original approach that allows the recognition of the similar features exhibited by the surface of these materials. With the help of SEM, TGA, SAXS, and DRIFTS, it was found that the SP, PP, and AER samples present a complicated pore size distribution composed of micropores and mesopores formed by the agglomeration of primary nanoparticles. The specific surface areas of the synthesized PP silica and one of the AER are extremely high, a fact very significant for the application of these materials as catalyst supports and adsorbents. The specific surface area of the amorphous materials was confirmed with a novel methodology, applying the TGA data. Furthermore, the carbon dioxide adsorption data allowed the measurement of the isosteric heat of adsorption with a single isotherm, applying an original methodology. The contribution of the dispersive interactions to the adsorption energy was theoretically calculated to analyze the separate contribution of the dispersive and the quadrupole interactions. In addition, the careful analysis of the DRIFT spectra of carbon dioxide adsorbed on silica at 298 K generated information about the carbon dioxide-silica interactions, which allowed us to conclude that, in this interaction, besides the dispersive and quadrupole interactions, there is present a weakly bonded adduct, that is, H δ+ ··· δ- O=C=O δ- . Finally, this is a new finding as far as we know.

36 MATERIALS SCIENCE↗

Near-Field Corrosion Interactions between Glass and Corrosion Resistant Alloys

This study explores the corrosion interactions between model nuclear waste glass materials and corrosion resistant alloys, under conditions that simulate the near field of a nuclear waste repository. The interactions between the corrosion of stainless steel (SS) 316, alloy G30, or alloy 625, and international simple glass or soda-lime silica glass are systematically studied. The dissimilar materials were exposed in close proximity to each other in different electrolytes at 90 oC. After exposure, the glass surface exposed near metals showed different regimes of corrosion, with distinct surface morphologies and chemistries that were likely affected by the local environment created by the localized corrosion of metals. Surface and solution analyses showed that the corrosion rate of glass was enhanced by the presence of metals. Infrared spectroscopy data suggested the local build-up of stresses in the contact area of glass, which may lead to the mechanical instability of the glass alteration layer. On the other hand, the effect of glass on metal corrosion is strongly dependent on the leaching solution. In electrolytes containing abundant aggressive anions such as Cl-, glass seems to suppress the localized corrosion of SS by the precipitation of a Si-rich surface film that protects the SS substrate from solutions. However, in less aggressive electrolytes, the corrosion rate of SS was increased by the presence of glass corrosion products. Overall, our study showed that the hidden and localized damage on glass in contact with metals may enhance the release of incorporated radionuclides compared to typical uniform glass corrosion. Therefore, more attention should be paid to the corrosion interactions between metals and glass under repository conditions.

Guo, Xiaolei↗

Dynamical screening of van der Waals interactions in nanostructured solids: Sublimation of fullerenes

Sublimation energy is one of the most important properties of molecular crystals, but it is difficult to study, because the attractive long-range van der Waals (vdW) interaction plays an important role. Here, we apply efficient semilocal density functional theory (DFT), corrected with the dynamically screened vdW interaction (DFT + vdW), the Rutgers-Chalmers nonlocal vdW-DF, and the pairwise-based dispersion-corrected DFT-D2 developed by Grimme and co-workers, to study the sublimation of fullerenes. We find that the short-range part, which accounts for the interaction due to the orbital overlap between fullerenes, is negligibly small. Our calculation shows that there exists a strong screening effect on the vdW interaction arising from the valence electrons of fullerenes. On the other hand, higher-order contributions can be as important as the leading-order term. The reasons are that (i) the surface of fullerene molecules is metallic and thus highly polarizable, (ii) the band gap of fullerene solids is small (less than 2 eV), and (iii) fullerene molecules in the solid phase are so densely packed, yielding the high valence electron density and small equilibrium intermolecular distances (the first nearest neighbor distance is only about 10 Å for C{sub 60}). However, these two effects make opposite contributions, leading to significant error cancellation between these two contributions. We demonstrate that, by considering higher-order contributions and the dynamical screening, the DFT + vdW method can yield sublimation energies of fullerenes in good agreement with reference values, followed by vdW-DF and DFT-D2. The insights from this study are important for a better understanding of the long-range nature of vdW interactions in nanostructured solids.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Accuracy of tip-sample interaction measurements using dynamic atomic force microscopy techniques: Dependence on oscillation amplitude, interaction strength, and tip-sample distance

Atomic force microscopy (AFM) is a versatile surface characterization method that can map a sample’s topography with high spatial resolution while simultaneously interrogating its surface chemistry through the site-specific high-resolution quantification of the forces acting between the sample and the probe tip. Thanks to considerable advances in AFM measurement technology, such local measurements of chemical properties have gained much popularity in recent years. To this end, dynamic AFM methodologies are implemented where either the oscillation frequency or the oscillation amplitude and phase of the vibrating cantilever are recorded as a function of tip-sample distance and subsequently converted to reflect tip-sample forces or interaction potentials. Such conversion has, however, been shown to produce non-negligible errors when applying the most commonly used mathematical conversion procedures if oscillation amplitudes are of the order of the decay length of the interaction. Extending on these earlier findings, the computational study presented in this paper reveals that the degree of divergence from actual values may also critically depend on both the overall strength of tip-sample interaction and the distance at which the interaction is obtained. These systematic errors can, however, be effectively eliminated by using oscillation amplitudes that are sufficiently larger than the decay length of the interaction potential.

Electrical properties and parameters↗

GAS-PHASE OXYGEN GRADIENTS IN STRONGLY INTERACTING GALAXIES. I. EARLY-STAGE INTERACTIONS

A consensus is emerging that interacting galaxies show depressed nuclear gas metallicities compared to isolated star-forming galaxies. Simulations suggest that this nuclear underabundance is caused by interaction-induced inflow of metal-poor gas and that this inflow concurrently flattens the radial metallicity gradients in strongly interacting galaxies. We present metallicities of over 300 H II regions in a sample of 16 spirals that are members of strongly interacting galaxy pairs with mass ratio near unity. The deprojected radial gradients in these galaxies are about half of those in a control sample of isolated, late-type spirals. Detailed comparison of the gradients with simulations shows remarkable agreement in gradient distributions, the relationship between gradients and nuclear underabundances, and the shape of profile deviations from a straight line. Taken together, this evidence conclusively demonstrates that strongly interacting galaxies at the present day undergo nuclear metal dilution due to gas inflow, as well as significant flattening of their gas-phase metallicity gradients, and that current simulations can robustly reproduce this behavior at a statistical level.

79 ASTRONOMY AND ASTROPHYSICS↗

Interacting dark sector and precision cosmology

We consider a recently proposed model in which dark matter interacts with a thermal background of dark radiation. Dark radiation consists of relativistic degrees of freedom which allow larger values of the expansion rate of the universe today to be consistent with CMB data (H 0 -problem). Scattering between dark matter and radiation suppresses the matter power spectrum at small scales and can explain the apparent discrepancies between ΛCDM predictions of the matter power spectrum and direct measurements of Large Scale Structure LSS (σ 8 -problem). We go beyond previous work in two ways: 1. we enlarge the parameter space of our previous model and allow for an arbitrary fraction of the dark matter to be interacting and 2. we update the data sets used in our fits, most importantly we include LSS data with full k-dependence to explore the sensitivity of current data to the shape of the matter power spectrum. We find that LSS data prefer models with overall suppressed matter clustering due to dark matter - dark radiation interactions over ΛCDM at 3-4 σ. However recent weak lensing measurements of the power spectrum are not yet precise enough to clearly distinguish two limits of the model with different predicted shapes for the linear matter power spectrum. In two Appendices we give a derivation of the coupled dark matter and dark radiation perturbation equations from the Boltzmann equation in order to clarify a confusion in the recent literature, and we derive analytic approximations to the solutions of the perturbation equations in the two physically interesting limits of all dark matter weakly interacting or a small fraction of dark matter strongly interacting.

79 ASTRONOMY AND ASTROPHYSICS↗

Molecular interactions from the density functional theory for chemical reactivity: Interaction chemical potential, hardness, and reactivity principles

In the first paper of this series, the authors derived an expression for the interaction energy between two reagents in terms of the chemical reactivity indicators that can be derived from density functional perturbation theory. While negative interaction energies can explain reactivity, reactivity is often more simply explained using the “|dμ| big is good” rule or the maximum hardness principle. Expressions for the change in chemical potential (μ) and hardness when two reagents interact are derived. A partial justification for the maximum hardness principle is that the terms that appear in the interaction energy expression often reappear in the expression for the interaction hardness, but with opposite sign.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

SSME LOX post flow analysis/fluid structure interaction. Volume 2: Fluid structure interaction

The progress made in resolving the computational issues associated with modeling high temperature and pressure viscous flows in advanced propulsion systems is documented. An overview of adaptive computational methods for various classes of fluid-structure interaction problems is presented. The key features associated with several approaches are outlined and the advantages/disadvantages of each are summarized. A mathematical formulation is presented for general fluid-structure interaction problems with a moving domain. The two adaptive approaches are discussed used in solving the benchmark problems. The first scheme is a user interactive scheme which is quite versatile and easy to implement but requires an excessive amount of monitoring by the operator and is computationally inefficient. The second method is a new, local remeshing method for handling a general class of fluid-structure interaction problems. This method couples many of the attractive features of other approaches into a computationally efficient and versatile method. The results obtained for two test cases are presented. Results from both the user interactive and local remeshing procedure are described. The current status of the project and future goals to be completed are summarized.

Source record↗

DSMC Simulation of Shock/Shock Interactions: Emphasis on Type IV Interactions

This paper presents the results of a numerical study of shock/shock interactions that include both the Edney type IV and type III interactions, with emphasis on the type IV interactions. Computations are made using the direct simulation Monte Carlo (DSMC) method of Bird for Mach 10 air flow, as produced in the ONERA R5Ch low-density wind tunnel. The simulations include the flow about a shock generator which creates a relatively weak oblique shock that impinges on a much stronger cylinder bow shock. The sensitivity and characteristics of the interactions are examined by varying the horizontal distance separating the shock generator leading edge and cylinder. Results of the simulation for one separation distance are compared with wind tunnel measurements. Comparisons are made for surface heating and pressure and for flow-field values of density and rotational temperatures, as obtained with the Dual-line Coherent Anti-Stokes Scattering (DL-CARS) technique. The comparisons between experiment and calculation yield a consistent description of the shock interaction features and a consistent description of the surface heating and pressure distributions, with the exception of the peak values-the computed values being greater than the measured values.

Moss, J. N.↗