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At least 163 records · Page 9

New approaches to the measurement of chlorophyll, related pigments and productivity in the sea

In the 1984 SBIR Call for Proposals, NASA solicited new methods to measure primary production and chlorophyll in the ocean. Biospherical Instruments Inc. responded to this call with a proposal first to study a variety of approaches to this problem. A second phase of research was then funded to pursue instrumentation to measure the sunlight stimulated naturally occurring fluorescence of chlorophyll in marine phytoplankton. The monitoring of global productivity, global fisheries resources, application of above surface-to-underwater optical communications systems, submarine detection applications, correlation, and calibration of remote sensing systems are but some of the reasons for developing inexpensive sensors to measure chlorophyll and productivity. Normally, productivity measurements are manpower and cost intensive and, with the exception of a very few expensive multiship research experiments, provide no contemporaneous data. We feel that the patented, simple sensors that we have designed will provide a cost effective method for large scale, synoptic, optical measurements in the ocean. This document is the final project report for a NASA sponsored SBIR Phase 2 effort to develop new methods for the measurements of primary production in the ocean. This project has been successfully completed, a U.S. patent was issued covering the methodology and sensors, and the first production run of instrumentation developed under this contract has sold out and been delivered.

Booth, C. R.↗

The Response of the Amazon Ecosystem to the Photosynthetically Active Radiation Fields: Integrating Impacts of Biomass Burning Aerosol and Clouds in the NASA GEOS Earth System Model

The Amazon experiences fires every year, and the resulting biomass burning aerosols, together with cloud particles, influence the penetration of sunlight through the atmosphere, increasing the ratio of diffuse to direct photosynthetically active radiation (PAR) reaching the vegetation canopy and thereby potentially increasing ecosystem productivity. In this study, we use the NASA Goddard Earth Observing System (GEOS) model with coupled aerosol, cloud, radiation, and ecosystem modules to investigate the impact of Amazon biomass burning aerosols on ecosystem productivity, as well as the role of the Amazon’s clouds in tempering this impact. The study focuses on a seven-year period (2010-2016) during which the Amazon experienced a variety of dynamic environments (e.g., La Niña, normal years, and El Niño). The direct radiative impact of biomass burning aerosols on ecosystem productivity—called here the aerosol diffuse radiation fertilization effect —is found to increase Amazonian Gross Primary Production (GPP) by 2.6% via a 3.8% increase in diffuse PAR (DFPAR) despite a 5.4% decrease in direct PAR (DRPAR) on multiyear average during burning seasons. On a monthly basis, this increase in GPP can be as large as 9.9% (occurring in August 2010). Consequently, the net primary production (NPP) in Amazon is increased by 1.5%, or ~92 Tg C a-1– equivalent to ~37% of the average carbon lost due to Amazon fires over the seven years considered. Clouds, however, strongly regulate the effectiveness of the aerosol diffuse radiation fertilization effect. The efficiency of this fertilization effect is the highest in cloud-free conditions and linearly decreases with increasing cloud amount until the cloud fraction reaches ~0.8, at which point the aerosol-influenced light changes from being a stimulator to an inhibitor of plant growth. Nevertheless, interannual changes in the overall strength of the aerosol diffuse radiation fertilization effect are primarily controlled by the large interannual changes in biomass burning aerosols rather than by changes in cloudiness during the studied period.

biomass burning aerosols on ecosystem productivity↗

Use of near infrared/red radiance ratios for estimating vegetation biomass and physiological status

The application of photographic infrared/red (ir/red) reflectance or radiance ratios for the estimation of vegetation biomass and physiological status were investigated by analyzing in situ spectral reflectance data from experimental grass plots. Canopy biological samples were taken for total wet biomass, total dry biomass, leaf water content, dry green biomass, dry brown biomass, and total chlorophyll content at each sampling date. Integrated red and photographic infrared radiances were regressed against the various canopy or plot variables to determine the relative significance between the red, photographic infrared, and the ir/red ratio and the canopy variables. The ir/red ratio is sensitive to the photosynthetically active or green biomass, the rate of primary production, and actually measures the interaction between the green biomass and the rate of primary production within a given species type. The ir/red ratio resulted in improved regression significance over the red or the ir/radiances taken separately. Only slight differences were found between ir/red ratio, the ir-red difference, the vegetation index, and the transformed vegetation index. The asymptotic spectral radiance properties of the ir, red, ir/red ratio, and the various transformations were evaluated.

Tucker, C. J.↗

Overview of Solar-Induced Chlorophyll Fluorescence (SIF) from the Orbiting Carbon Observatory-2: Retrieval, Cross-Mission Comparison, and Global Monitoring for GPP

The Orbiting Carbon Observatory-2 (OCO-2), launched in July 2014, is capable of measuring Solar-Induced chlorophyll Fluorescence (SIF), a functional proxy for terrestrial gross primary productivity (GPP). Although its primary mission is to measure the column-averaged mixing ratio of CO2 (Xco(sub 2)) to constrain global carbon source/sink distribution, one of the OCO-2 spectrometers allows for a robust SIF retrieval solely based on solar Fraunhofer lines. Here we present a technical overview of the OCO-2 SIF product, aiming to provide the scientific community guidance on best practices for data analysis, interpretation, and application. This overview consists of the retrieval algorithms, OCO-2 specific bias correction, retrieval uncertainty evaluation, cross-mission comparison with other existing SIF products, and a global-scale examination of the SIF-GPP relationship. With the initial three years of data (September 2014 onward), we compared OCO-2 SIF with retrievals from Greenhouse Gases Observing Satellite (GOSAT) and Global Ozone Monitoring Experiment-2 (GOME-2), and examined its relationship with FLUXCOM and MODIS GPP datasets. Our results show that OCO-2 SIF, along with GOSAT products, closely resemble the mean spatial and temporal patterns of FLUXCOM GPP from regions to the globe. Compared with GOME-2, however, OCO-2 depicts a more realistic spatial contrast between the tropics and extra-tropics. The linear relationship between OCO-2 SIF and existing modeled GPP products diverges somewhat across biomes at the global scale, consistent with previous GOSAT or GOME-2 based findings when modeled GPP products were used, but in contrast to a consistent cross-biome SIF-GPP relationship obtained at flux tower sites with OCO-2 products. This contrast suggests a critical need to reconcile differences in diverse SIF and GPP products and the relationships among them. Overall, the OCO-2 SIF products are robust and valuable for monitoring the global terrestrial carbon cycle and for constraining the carbon source/sink strengths of the Earth system. Finally, insights are offered for future satellite missions optimized for SIF retrievals.

GPP↗

A matrix-isolation-infrared spectroscopic study of the reactions of nitric oxide with oxygen and ozone

An investigation of the oxidation of NO to NO2 by trapping the products of the gas-phase reactions with excess oxygen and ozone identified the transient species by their infrared spectra. The primary products of the NO + NO2 reactions were NO2, N2O3(A), N2O3(B), N2O4, and peroxy nitrate (OONO). The primary products of the NO + O3 reactions were NO2 and peroxy NO3 with the higher nitric oxides in low concentrations compared with the NO + O2 reactions. Isotopic oxygen and ozone were used to identify the infrared absorption frequency of the peroxy nitrate.

Bhatia, S. C.↗

Color banding on Georges Bank as viewed by coastal zone color scanner

Observations of Georges Bank by coastal zone color scanner (CZCS) show bandlike patterns that appear to be related to the large sand dunes and ridges which dominate the bottom topography there. Ship measurements of temperature and chlorophyll on Georges Bank in July 1979 also reflect the influence of the underwater dune fields. The cause of the banding in the CZCS data is unknown but is speculated to be the creation of alternating zones of divergence and convergence by tidal currents as the water flows over the underwater dune-trough configuration. The banding observed by CZCS appears to be seasonal, following the sequence of primary production in the Gulf of Maine, and is believed to be important to biological processes as a site of new production and/or as an effective transport mechanism. Any future models that attempt to interrelate tidal mixing and primary production must consider bottom topography and secondary flows.

Yentsch, C. S.↗

Comparison of North and South American biomes from AVHRR observations

Previous analysis of the North American continent with AVHRR-derived vegetation index measurements showed a strong relation between known patterns of vegetation seasonality, productivity and the spectral vegetation index measurements. This study extends that analysis to South America to evaluate the degree to which these findings extend to tropical regions. The results show that the spectral vegetation index measurements provide a general indicator of vegetation activity across the major biomes of the Western Hemisphere of the earth, including tropical regions. The satellite-observed patterns are strongly related to the known climatology of the continents and may offer a means to improve understanding of global bioclimatology. For example, South America is shown to have a longer growing season with much earlier spring green-up than North America. The time integral of the measurements, computed from 12 composited monthly values, produces a value that is related to published net primary productivity data. However, limited net primary production data does not allow complete evaluation of satellite-observed contrasts between North and South American biomes. These results suggest that satellite-derived spectral vegetation index measurements are of great potential value in improving knowledge of the earth's biosphere.

Goward, Samuel N.↗

Methane Production by Microbial Mats Under Low Sulfate Concentrations

Cyanobacterial mats collected in hypersaline salterns were incubated in a greenhouse under low sulfate concentrations ([SO4]) and examined for their primary productivity and emissions of methane and other major carbon species. Atmospheric greenhouse warming by gases such as carbon dioxide and methane must have been greater during the Archean than today in order to account for a record of moderate to warm paleoclemates, despite a less luminous early sun. It has been suggested that decreased levels of oxygen and sulfate in Archean oceans could have significantly stimulated microbial methanogenesis relative to present marine rates, with a resultant increase in the relative importance of methane in maintaining the early greenhouse. We maintained modern microbial mats, models of ancient coastal marine communities, in artificial brine mixtures containing both modern [SO4=] (ca. 70 mM) and "Archean" [SO4] (less than 0.2 mM). At low [SO4], primary production in the mats was essentially unaffected, while rates of sulfate reduction decreased by a factor of three, and methane fluxes increased by up to ten-fold. However, remineralization by methanogenesis still amounted to less than 0.4 % of the total carbon released by the mats. The relatively low efficiency of conversion of photosynthate to methane is suggested to reflect the particular geometry and chemical microenvironment of hypersaline cyanobacterial mats. Therefore, such mats w-ere probably relatively weak net sources of methane throughout their 3.5 Ga history, even during periods of low- environmental levels oxygen and sulfate.

Bebout, Brad M.↗

Satellite Ocean Color Sensor Design Concepts and Performance Requirements

In late 1978, the National Aeronautics and Space Administration (NASA) launched the Nimbus-7 satellite with the Coastal Zone Color Scanner (CZCS) and several other sensors, all of which provided major advances in Earth remote sensing. The inspiration for the CZCS is usually attributed to an article in Science by Clarke et al. who demonstrated that large changes in open ocean spectral reflectance are correlated to chlorophyll-a concentrations. Chlorophyll-a is the primary photosynthetic pigment in green plants (marine and terrestrial) and is used in estimating primary production, i.e., the amount of carbon fixed into organic matter during photosynthesis. Thus, accurate estimates of global and regional primary production are key to studies of the earth's carbon cycle. Because the investigators used an airborne radiometer, they were able to demonstrate the increased radiance contribution of the atmosphere with altitude that would be a major issue for spaceborne measurements. Since 1978, there has been much progress in satellite ocean color remote sensing such that the technique is well established and is used for climate change science and routine operational environmental monitoring. Also, the science objectives and accompanying methodologies have expanded and evolved through a succession of global missions, e.g., the Ocean Color and Temperature Sensor (OCTS), the Seaviewing Wide Field-of-view Sensor (SeaWiFS), the Moderate Resolution Imaging Spectroradiometer (MODIS), the Medium Resolution Imaging Spectrometer (MERIS), and the Global Imager (GLI). With each advance in science objectives, new and more stringent requirements for sensor capabilities (e.g., spectral coverage) and performance (e.g., signal-to-noise ratio, SNR) are established. The CZCS had four bands for chlorophyll and aerosol corrections. The Ocean Color Imager (OCI) recommended for the NASA Pre-Aerosol, Cloud, and Ocean Ecosystems (PACE) mission includes 5 nanometers hyperspectral coverage from 350 to 800 nanometers with three additional discrete near infrared (NIR) and shortwave infrared (SWIR) ocean aerosol correction bands. Also, to avoid drift in sensor sensitivity from being interpreted as environmental change, climate change research requires rigorous monitoring of sensor stability. For SeaWiFS, monthly lunar imaging accurately tracked stability at an accuracy of approximately 0.1% that allowed the data to be used for climate studies [2]. It is now acknowledged by the international community that future missions and sensor designs need to accommodate lunar calibrations. An overview of ocean color remote sensing and a review of the progress made in ocean color remote sensing and the variety of research applications derived from global satellite ocean color data are provided. The purpose of this chapter is to discuss the design options for ocean color satellite radiometers, performance and testing criteria, and sensor components (optics, detectors, electronics, etc.) that must be integrated into an instrument concept. These ultimately dictate the quality and quantity of data that can be delivered as a trade against mission cost. Historically, science and sensor technology have advanced in a "leap-frog" manner in that sensor design requirements for a mission are defined many years before a sensor is launched and by the end of the mission, perhaps 15-20 years later, science applications and requirements are well beyond the capabilities of the sensor. Section 3 provides a summary of historical mission science objectives and sensor requirements. This progression is expected to continue in the future as long as sensor costs can be constrained to affordable levels and still allow the incorporation of new technologies without incurring unacceptable risk to mission success. The IOCCG Report Number 13 discusses future ocean biology mission Level-1 requirements in depth.

Ocean Color↗

Light response of phytoplankton in the South Atlantic Ocean: Interpretation of observations and application to remote sensing

A simplified, nonspectral derivation of a classical theory in plant physiology is presented and used to derive an absorption-based primary productivity algorithm. Field observations from a meridional transect (4 deg N to 42 deg S) in the Atlantic Ocean are then described and interpreted in this theoretical context. The observations include photosynthesis-irradiance curve parameters (alpha and P(sub max)), chlorophyll a and phaeopigment concentration, and estimated phytoplankton absorption coefficients at wavelength = 440 nm (a(sub ph)(440)). Observations near the top (50% I(sub 0)) and bottom (6% I(sub 0)) of the euphotic zone are contrasted. At both light levels, alpha, P(sub max), a(sub ph)(440), and pigment concentration varied similarly along the transect: values were highest at the equator and at the southern end of the transect and lowest in the central South Atlantic. It is concluded that this pattern was related to increased nutrient availability due to equatorial upwelling in the north, and increased wind mixing in the south. At the 50% light level, alpha increased relative to a(sub ph) at the southern end of the transect. This result appears to reflect a large-scale meridional (southward) increase in the average quantum efficiency of the photosynthetic units of the phytoplankton. A correlation analysis of the data reveals that at the 50% light level, variations in P(sub max) were more closely related to a(sub ph)(440) than chlorophyll concentration and that phytoplankton absorption explains 90% of the variability in P(sub max). In theory, this shows that the ratio of the average quantum efficiency of the photosynthetic units of the phytoplankton to the product of their average absorption cross section and turnover time is relatively constant. This result is used to simplify the absorption-based primary productivity algorithm derived previously. The feasibility of using this model to estimate production rate from satellite ocean color observations is discussed. It is concluded that an absorption-based algorithm should provide more accurate production rate estimates than one based upon chlorophyll (pigment) concentration.

Hood, Raleigh R.↗

Direct detection of C4H2 photochemical products - Possible routes to complex hydrocarbons in planetary atmospheres

The photochemistry of diacetylene (C4H2), the largest hydrocarbon to be unambiguously identified in planetary atmospheres, is of considerable importance to understanding the mechanisms by which complex molecules are formed in the solar system. In this work, the primary products of C4H2's ultraviolet photochemistry were determined in a two-laser pump-probe scheme in which the products of C4H2 photoexcitation are detected by vacuum ultraviolet photoionization in a time-of-flight mass spectrometer. Three larger hydrocarbon primary products were observed with good yield in the C4H2 + C4H2 reaction: C6H2, C8H2, and C8H3. Neither C6H2 or C8H3 is anticipated by current photochemical models of the atmospheres of Titan, Uranus, Neptune, Pluto, and Triton. The free hydrogen atoms that are released during the formation of the C8H3 and C8H2 products also may partially offset the role of C4H2 in catalyzing the recombination of free hydrogen atoms in the planetary atmospheres.

Bandy, Ralph E.↗

Bio-Optical Properties of the Arabian Sea as Determined by In Situ and Sea WiFS Data

The overall objective of this work was to characterize optical and fluorescence properties in the euphotic zone during two British Ocean Flux Study (BOFS) Arabian Sea cruises. This was later expanded in 1995 to include three U.S. JGOFS Arabian Sea Cruises. The region was to be divided into one or more "bio-optical provinces," within each of which a single set of regression models was to be developed to relate the vertical distribution of irradiance attenuation and normalized fluorescence (SF and NF) to remote sensing reflectance and diffuse attenuation coefficient. The working hypothesis was that over relatively large spatial and temporal scales, the vertical profiles of bio-optical properties were predictable. The specific technical objectives were: (1) To characterize the vertical distribution of the inherent and apparent optical properties by measuring downwelling and upwelling irradiances, upwelling radiances, scalar irradiance of PAR, and beam transmissions at each station - from these data, spectral diffuse attenuation coefficients, irradiance reflectances, remote sensing reflectances, surface-leaving radiances and beam attenuation coefficients were determined; (2) To characterize the spectral absorption of total particulate, detrital, and dissolved organic material at each station from discrete water samples; (3) To describe the vertical distribution of photoadaptive properties in the water column by measuring profiles of stimulated (SF) and natural (NF) fluorescence and examining relationships between SF and NF as a function of diffuse optical depth, pigment biomass and primary productivity; and (4) To establish locally derived, in-water algorithms relating remote sensing reflectance spectra to diffuse attenuation coefficients, phytoplankton pigment concentrations and primary productivity, through intercomparisons with in situ measurements, for application to SeaWiFS data.

Trees, Charles C.↗

Effects of climate and lifeform on dry matter yield (epsilon) from simulations using BIOME BGC

An ecosystem process simulation model, BIOME-BGC, is used in a sensitivity analysis to determine the factors that may cause the dry matter yield (epsilon) and annual net primary production to vary for different ecosystems. At continental scales, epsilon is strongly correlated with annual precipitation. At a single location, year-to-year variation in net primary production (NPP) and epsilon is correlated with either annual precipitation or minimum air temperatures. Simulations indicate that forests have lower epsilon than grasslands. The most sensitive parameter affecting forest epsilon is the total amount of living woody biomass, which affects NPP by increasing carbon loss by maintenance respiration. A global map of woody biomass should significantly improve estimates of global NPP using remote sensing.

Hunt, E. R., Jr.↗

A simulation analysis of the fate of phytoplankton within the mid-Atlantic bight

A time-dependent, three-dimensional simulation model of wind-induced changes of the circulation field, of light and nutrient regulation of photosynthesis, of vertical mixing as well as algal sinking, and of herbivore grazing stress, is used to analyze the seasonal production, consumption, and transport of the spring bloom within the mid-Atlantic Bight. The particular case (c) of a 58-day period in February-April 1979, simulated primary production, based on both nitrate and recycled nitrogen, with a mean of 0.62 g C sq m/day over the whole model domain, and an export at the shelf-break off Long Island of 2.60 g ch1 sq m/day within the lower third of the water column. About 57% of the carbon fixation was removed by herbivores, with 21% lost as export, either downshelf or offshore to slope waters, after the first 58 days of the spring bloom. Extension of the model for another 22 days of case (c) increased the mean export to 27%, while variation of the model's parameters in 8 other cases led to a range in export from 8% to 38% of the average primary production. Spatial and temporal variations of the simulated albal biomass, left behind in the shelf water column, reproduced chlorophyll fields sensed by satellite, shipboard, and in situ instruments.

Walsh, J. J.↗

LIDAR and acoustics applications to ocean productivity

The requirements for the submersible, the instrumentation necessary to perform these measurements, and the optical and acoustical technology required to develop the ocean color scanner instrumentation are described. The development of a second generation ocean color scanner produced the need for coincident in situ scientific measurements which examine the primary productivity of the upper ocean on time and space scales which are large compared to the environmental scales. The vertical and horizontal variability of the biota, including the relationship between chlorophyll and primary productivity, the productivity of zooplankton, and the dynamic interaction between phytoplankton and zooplankton, and between these populations and the physical environment are investigated. A towed submersible will be constructed which accommodates both an underwater LIDAR instrument and a multifrequency sonar.

Collins, D. J.↗

Photodissociation of Cl2O2 in the spring Antarctic lower stratosphere

The likely photodissociation pathways of chlorine peroxide are examined. Reasoning by analogy between hydrogen peroxide and chlorine peroxide, it is shown that photodissociation of chlorine peroxide at wavelengths longer than 250 nm is not likely to give chlorine atoms as a primary product. Reasoning by analogy with molecules whose visible spectra are known, it is concluded that chlorine peroxide is also likely to photodissociate in the visible to give ClO radicals as primary products.

Eberstein, Igor J.↗

Ocean and Atmospheric Profiling Lidar Observations and Its Link to Ocean Carbon Cycle

This study introduces space-based ocean and atmospheric profiling lidar for improving modeling and understanding of ocean carbon cycle. Unique measurements from space-based profiling lidars include (1) the global ocean surface mean square slope measurements for improving air-sea turbulence exchange estimates; (2) the backscatter and beam attenuation measurements for improving the global estimate of partial pressure of CO2 of the ocean with the reduction of uncertainties in primary productivity estimates. Global statistics of CALIOP integrated ocean subsurface backscatter measurements of coastal waters will be presented. The study will also assess the impact of CALIOP on the uncertainty reduction of primary productivity and the improvement of CO2 partial pressure estimates. Ocean surface roughness statistics, its applications in air-sea interaction and its comparisons with other measurements will also be presented

Hu, Yongxiang↗

Diurnal and Seasonal Solar Induced Chlorophyll Fluorescence and Photosynthesis in a Boreal Scots Pine Canopy

Solar induced chlorophyll fluorescence has been shown to be increasingly an useful proxy for the estimation of gross primary productivity (GPP), at a range of spatial scales. Here, we explore the seasonality in a continuous time series of canopy solar induced fluorescence (hereafter SiF) and its relation to canopy gross primary production (GPP), canopy light use efficiency (LUE), and direct estimates of leaf level photochemical efficiency in an evergreen canopy. SiF was calculated using infilling in two bands from the incoming and reflected radiance using a pair of Ocean Optics USB2000+ spectrometers operated in a dual field of view mode, sampling at a 30 min time step using custom written automated software, from early spring through until autumn in 2011. The optical system was mounted on a tower of 18 m height adjacent to an eddy covariance system, to observe a boreal forest ecosystem dominated by Scots pine. (Pinus sylvestris) A Walz MONITORING-PAM, multi fluorimeter system, was simultaneously mounted within the canopy adjacent to the footprint sampled by the optical system. Following correction of the SiF data for O2 and structural effects, SiF, SiF yield, LUE, the photochemicsl reflectance index (PRI), and the normalized difference vegetation index (NDVI) exhibited a seasonal pattern that followed GPP sampled by the eddy covariance system. Due to the complexities of solar azimuth and zenith angle (SZA) over the season on the SiF signal, correlations between SiF, SiF yield, GPP, and LUE were assessed on SZA <50° and under strictly clear sky conditions. Correlations found, even under these screened scenarios, resulted around ~r2 = 0.3. The diurnal responses of SiF, SiF yield, PAM estimates of effective quantum yield (ΔF/Fm′), and meteorological parameters demonstrated some agreement over the diurnal cycle. The challenges inherent in SiF retrievals in boreal evergreen ecosystems are discussed.

photosynthetic↗