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SIMBIOS Project

The purpose of this technical report is to provide current documentation of the Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) Project activities, NASA Research Announcement (NRAI) research status, satellite data processing, data product validation, and field calibration. This documentation is necessary to ensure that critical information is related to the scientific community and NASA management. This critical information includes the technical difficulties and challenges of validating and combining ocean color data from an array of independent satellite systems to form consistent and accurate global bio-optical time series products. This technical report is not meant as a substitute for scientific literature. Instead, it will provide a ready and responsive vehicle for the multitude of technical reports issued by an operational project.

Fargion, Giulietta S.↗

SIMBIOS Project

The purpose of this technical report is to provide current documentation of the Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) Project activities, NASA Research Announcement (NRA) research status, satellite data processing, data product validation, and field calibration. This documentation is necessary to ensure that critical information is related to the scientific community and NASA management. This critical information includes the technical difficulties and challenges of validating and combining ocean color data from an array of independent satellite systems to form consistent and accurate global bio-optical time series products. This technical report is not meant as a substitute for scientific literature. Instead, it will provide a ready and responsive vehicle for the multitude of technical reports issued by an operational project. The SIMBIOS Science Team Principal Investigators' (PIs) original contributions to this report are in chapters four and above. The purpose of these contributions is to describe the current research status of the SIMBIOS-NRA-96 funded research. The contributions are published as submitted, with the exception of minor edits to correct obvious grammatical or clerical errors.

Fargion, Giulietta S.↗

Sources of Variability in Chlorophyll Analysis by Fluorometry and High-Performance Liquid Chromatography in a SIMBIOS Inter-Calibration Exercise

The purpose of this technical report is to provide current documentation of the Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) Project activities, NASA Research Announcement (NRA) research status, satellite data processing, data product validation, and field calibration. This documentation is necessary to ensure that critical information is related to the scientific community and NASA management. This critical information includes the technical difficulties and challenges of validating and combining ocean color data from an array of independent satellite systems to form consistent and accurate global bio-optical time series products. This technical report is not meant as a substitute for scientific literature. Instead, it will provide a ready and responsive vehicle for the multitude of technical reports issued by an operational project. This particular document focus on the variability in chlorophyll pigment measurements resulting from differences in methodologies and laboratories conducting the pigment analysis.

VanHeukelem, Laurie↗

SIMBIOS Project; 2003 Annual Report

The purpose of this technical report is to provide current documentation of the the Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) Project activities, NASA Research Announcement (NRA) research status, satellite data processing, data product validation, and field calibration. This documentation is necessary to ensure that critical information is related to the scientific community and NASA management. This critical information includes the technical difficulties and challenges of validating and combining ocean color data from an array of independent satellite systems to form consistent and accurate global bio-optical time series products. This technical report is not meant as a substitute for scientific literature. Instead, it will provide a ready and responsive vehicle for the multitude of technical reports issued by an operational project. The SIMBIOS Science Team Principal Investigators (PIs) original contributions to this report are in chapters four and above. The purpose of these contributions is to describe the current research status of the SIMBIOS-NRA-99 funded research. The contributions are published as submitted, with the exception of minor edits to correct obvious grammatical or clerical errors.

McClain, Charles R.↗

Preliminary Assessment of JERS-1 SAR to Discriminating Boreal Landscape Features for the Boreal Forest Mapping Project

This paper presents an overview of the JERS-1 North American Boreal Forest Mapping Project and a preliminary assessment of JERS-1 SAR imagery for application to discriminating features applicable to boreal landscape processes. The present focus of the JERS-1 North American Boreal Forest Mapping Project is the production of continental scale wintertime and summertime SAR mosaics of the North American boreal forest for distribution to the science community. As part of this effort, JERS-1 imagery has been collected over much of Alaska and Canada during the 1997-98 winter and 1998 summer seasons. To complete the mosaics, these data will be augmented with data collected during previous years. These data will be made available to the scientific community via CD ROM containing these and similar data sets compiled from companion studies of Asia and Europe. Regional landscape classification with SAR is important for the baseline information it will provide about distribution of woodlands, positions of treeline, current forest biomass, distribution of wetlands, and extent of major rivercourses. As well as setting the stage for longer term change detection, comparisons across several years provides additional baseline information about short-term landscape change. Rapid changes, including those driven by fire, permafrost heat balance, flooding, and insect outbreaks can dominate boreal systems. We examine JERS-1 imagery covering selected sites in Alaska and Canada to assess quality and applicability to such relevant ecological and hydrological issues. The data are generally of high quality and illustrate many potential applications. A texture-based classification scheme is applied to selected regions to assess the applicability of these data for distinguishing distribution of such landcover types as wetland, tundra, woodland and forested landscapes.

McDonald, Kyle↗

Solar System Studies with the Space Infrared Telescope Facility (SIRTF)

SIRTF (Space Infrared Telescope Facility) is the final element in NASA's 'Great Observatories' program. It consists of an 85-cm cryogenically-cooled observatory for infrared astronomy from space. SIRTF is scheduled for launch in late 2001 or early 2002 on a Delta rocket into a heliocentric orbit trailing the Earth. Data from SIRTF will be processed and disseminated to the community through the SIRTF Science Center (SSC) located at the Infrared Processing and Analysis Center (IPAC) at Caltech. Some 80/% of the total observing time (estimated at a minimum of 7500 hours of integration time per year for the mission lifetime of about 4 years) will be available to the scientific community at large through a system of refereed proposals. Three basic instruments are located in the SIRTF focal plane. The Multiband Imaging Photometer (MIPS), the Infrared Array Camera (IRAC), and the Infrared Spectrometer (IRS), taken together, provide imaging and spectroscopy from 3.5 to 160 microns. Among the solar system studies suited to SIRTF are the following: 1) spectroscopy and radiometry of small bodies from the asteroid main belt, through the Trojan clouds, to the Kuiper Disk; 2) dust distribution in the zodiacal cloud and the Earth's heliocentric dust ring; 3) spectroscopy and radiometry of comets; and 4) spectroscopy and radiometry of planets and their satellites. Searches for, and studies of dust disks around other stars, brown dwarfs, and superplanets will also be conducted with SIRTF. The SORTIE web site (http://ssc.ipac.caltech.edu/sirtf) contains important details and documentation on the project, the spacecraft, the telescope, instruments, and observing procedures. A community-wide workshop for solar system studies with SIRTF is in the planning stages by the author and Martha S. Hanner for the summer of 1999.

Cruikshank, Dale P.↗

Laboratory for Atmospheres 2002 Technical Highlights

How can we improve our ability to predict the weather-tomorrow, next week, and into the future? How is the Earth's climate changing? What causes such change? And what are its costs? What can the atmospheres of distant planets teach us about our own planet and its evolution? The Laboratory for Atmospheres is helping to answer these and other scientific questions about our planet and its neighbors. The Laboratory conducts a broad theoretical and experimental research program studying all aspects of the atmospheres of the Earth and other planets, including their structural, dynamical, radiative, and chemical properties, with the overarching goal to provide better understanding and to improve prediction of the Earth's climate. Vigorous research is central to NASA's exploration of the frontiers of knowledge. NASA scientists play a key role in conceiving new space missions, providing mission requirements, and carrying out research to explore the behavior of planetary systems, including, notably, the Earth's. Our Laboratory's scientists also supply outside scientists with technical assistance and scientific data to further investigations not immediately addressed by NASA itself. Laboratory scientists submit competitive research proposals with diverse scientific or technological approaches to NASA and other Federal agencies to acquire research support. The Laboratory management strives to provide a working environment that promotes creativity, competition, and openness. The Laboratory for Atmospheres is a vital participant in NASA's research program. Our Laboratory often has relatively large programs, sizable satellite missions, or observational campaigns that require the cooperative and collaborative efforts of many scientists. We ensure an appropriate balance between our scientists' responsibility for these large collaborative projects and their need for an active individual research agenda. This balance allows members of the Laboratory to continuously improve their scientific credentials. The Laboratory places high importance on promoting and measuring quality in its scientific research. We strive to assure high quality through peer-review funding processes that support approximately 90% of the work in the Laboratory. The overall quality of our scientific efforts is evaluated periodically by committees of advisors from the external scientific community, as detailed in Appendix 2 of this document. Members of the Laboratory interact with the general public to support a wide range of interests in the atmospheric sciences. Among other activities, the Laboratory raises the public's awareness of atmospheric science by presenting public lectures and demonstrations, by making scientific data available to wide audiences, by teaching, and by mentoring students and teachers. Section 6 presents details of the Laboratory's outreach activities during 2002. The Laboratory is also committed to addressing the demographic imbalances that exist today in the atmospheric and space sciences. We must address these imbalances for our field to enjoy the full benefit of all of the Nation's talent. The Laboratory makes substantial efforts to attract new scientists to the fields of atmospheric and space sciences. We strongly encourage the establishment of partnerships with Federal and state agencies that have operational responsibilities to promote the societal application of Earth sciences.

Steven E. Platnick↗

Gravitational Biology Facility on Space Station: Meeting the needs of space biology

The Gravitational Biology Facility (GBF) is a set of generic laboratory equipment needed to conduct research on Space Station Freedom (SSF), focusing on Space Biology Program science (Cell and Developmental Biology and Plant Biology). The GBF will be functional from the earliest utilization flights through the permanent manned phase. Gravitational biology research will also make use of other Life Sciences equipment on the space station as well as existing equipment developed for the space shuttle. The facility equipment will be developed based on requirements derived from experiments proposed by the scientific community to address critical questions in the Space Biology Program. This requires that the facility have the ability to house a wide variety of species, various methods of observation, and numerous methods of sample collection, preservation, and storage. The selection of the equipment will be done by the members of a scientific working group (5 members representing cell biology, 6 developmental biology, and 6 plant biology) who also provide requirements to design engineers to ensure that the equipment will meet scientific needs. All equipment will undergo extensive ground based experimental validation studies by various investigators addressing a variety of experimental questions. Equipment will be designed to be adaptable to other space platforms. The theme of the Gravitational Biology Facility effort is to provide optimal and reliable equipment to answer the critical questions in Space Biology as to the effects of gravity on living systems.

Allen, Katherine↗

Deep atmospheric probe missions to Uranus and Neptune

The impressive results of the Voyager 2 flybys of Uranus (January 1986) and Neptune (August 1989) revealed many surprises and produced a new set of scientific questions regarding the formation and evolution of the planets, their atmospheres, the rings that surround them, and their satellite systems. A new set of intensive exploration missions to these outer planets is currently being examined by NASA and the scientific community. These missions, like Galileo to Jupiter and Cassini to Saturn, are to provide longer-term high-resolution orbital observations together with in situ atmospheric measurements. This paper will examine the feasibility of using deep atmospheric probes in connection with orbital missions to Uranus and Neptune to obtain the desired scientific measurements down to atmospheric pressure levels of at least 200 bars. The key design parameters of the atmospheric mission and system are defined, examined in some detail, and feasible options are suggested for further study.

Swenson, Byron L.↗

Development of a moon-based magnetospheric and coronal imager using a large broadband array

The 'Missions to and from Planet Earth' mandated by President Bush in 1989 provide a unique opportunity for magnetospheric and coronal plasma physicists to cooperate with low frequency radio astronomers in the development of an advanced experiment designed for the lunar surface. A large active lunar based array would sound the Earth's magnetosphere at VLF frequencies and the solar corona at decametric wavelengths allowing plasma physicists to map both the Earth's magnetosphere and those regions in the solar corona that trigger precursors to solar flares. With the transmitter silent, the array would become the ideal low frequency radio telescope, examining both geospace emissions such as auroral kilometric radiation and extraterrestrial signals from the planets, pulsars, supernova remnants, and active galactic nuclei. Both experiments satisfy requirements mandated in both 'Mission to Planet Earth' and in 'Mission from Planet Earth.' By proposing a cooperative effort both communities (plasma physicists and radio astronomers) stand to benefit. Jim Green, Director of the NASA Space Science Data Center (NSSDC) at GSFC; Tony Phillips, Research Fellow at California Institute of Technology; T. D. Carr, Director of the University of Florida Radio Observatory (UFRO) and the author are enlisting the cooperation of the scientific community in defining the system specifications. Some components, such as the receivers, will be standard 'off-the-shelf' items, and hence will require little developmental research. However, the individual antenna elements and the phasing and matching networks will require some R&D to satisfy the frequency requirements (20 KHz-40 MHz). By flying the experiment in Earth orbit first, Dr. Green proposes to gather valuable magnetospheric data as well as to prove the principle of the large moon based experiment. He claims that funding for the preliminary ground based studies at the UFRO may be available as early as FY-92.

Lebo, George↗

Towards Test Driven Development for Computational Science with pFUnit

Developers working in Computational Science & Engineering (CSE)/High Performance Computing (HPC) must contend with constant change due to advances in computing technology and science. Test Driven Development (TDD) is a methodology that mitigates software development risks due to change at the cost of adding comprehensive and continuous testing to the development process. Testing frameworks tailored for CSE/HPC, like pFUnit, can lower the barriers to such testing, yet CSE software faces unique constraints foreign to the broader software engineering community. Effective testing of numerical software requires a comprehensive suite of oracles, i.e., use cases with known answers, as well as robust estimates for the unavoidable numerical errors associated with implementation with finite-precision arithmetic. At first glance these concerns often seem exceedingly challenging or even insurmountable for real-world scientific applications. However, we argue that this common perception is incorrect and driven by (1) a conflation between model validation and software verification and (2) the general tendency in the scientific community to develop relatively coarse-grained, large procedures that compound numerous algorithmic steps.We believe TDD can be applied routinely to numerical software if developers pursue fine-grained implementations that permit testing, neatly side-stepping concerns about needing nontrivial oracles as well as the accumulation of errors. We present an example of a successful, complex legacy CSE/HPC code whose development process shares some aspects with TDD, which we contrast with current and potential capabilities. A mix of our proposed methodology and framework support should enable everyday use of TDD by CSE-expert developers.

pFUnit↗

Satellite measurements of earth radiation budget for climate applications

Understanding the global balance between the absorption of solar radiation and the emission of longwave radiation is considered pivotal to understanding the processes which govern the earth's climate. In concert with a large scientific community interested in the earth's radiation budget, NASA has initiated a program to accurately determine the spatial and temporal characteristics of the earth's radiation budget. This program will utilize instrumentation placed on three satellites including the Space Shuttle-launched free flying Earth Radiation Budget Satellite. The program is discussed relative to its scientific background, plans for the Earth Radiation Budget Experiment, and the relationship of this effort to present and future climate research activities.

Curran, R. J.↗

Global Modeling, Field Campaigns, Upscaling and Ray Desjardins

In the early 1980's, it became apparent that land surface radiation and energy budgets were unrealistically represented in Global Circulation models (GCM's), Shortly thereafter, it became clear that the land carbon budget was also poorly represented in Earth System Models (ESM's), A number of scientific communities, including GCM/ESM modelers, micrometeorologists, satellite data specialists and plant physiologists, came together to design field experiments that could be used to develop and validate the contemporary prototype land surface models. These experiments were designed to measure land surface fluxes of radiation, heat, water vapor and CO2 using a network of flux towers and other plot-scale techniques, coincident with satellite measurements of related state variables, The interdisciplinary teams involved in these experiments quickly became aware of the scale gap between plot-scale measurements (approx 10 - 100m), satellite measurements (100m - 10 km), and GCM grid areas (l0 - 200km). At the time, there was no established flux measurement capability to bridge these scale gaps. Then, a Canadian science learn led by Ray Desjardins started to actively participate in the design and execution of the experiments, with airborne eddy correlation providing the radically innovative bridge across the scale gaps, In a succession of brilliantly executed field campaigns followed up by convincing scientific analyses, they demonstrated that airborne eddy correlation allied with satellite data was the most powerful upscaling tool available to the community, The rest is history: the realism and credibility of weather and climate models has been enormously improved enormously over the last 25 years with immense benefits to the public and policymakers.

Sellers, P. J.↗

Polar Magnetic Field Data

At this writing we have received all the CDROMs for the grant period. We have completed generating our timing tables past September 20, 2001. The calibration of the instrument has been checked for the entire mission up to the end of December 2000 and the key parameters provided to the project until the end of December 2000. These data are available to other experimenters over the web at http://www-ssc.igpp.ucla.edu/forms/polar/. High resolution spun data, 8 samples per see, have been created up to November, 2000 and have been made available to the community over the world wide web. This is a new data set that was a major effort this year. Our near term plans are to continue to provide key parameter data to the Polar project with the highest possible speed and to continue to reduce all high resolution magnetometer data and provide these data to the scientific community over the web.

Russell, Christopher T.↗

G-jitter Effects on Transport and Pattern Formation

The research performed under this grant has led to an number of new insights into two general categories of fluid flows in the presence of time-dependent acceleration, as outlined briefly below. These results have been widely communicated in the scientific community through seven presentations at international conferences (4 invited, 3 contributed), five published papers (4 journal articles and 1 conference proceeding), and images from the research featured on the cover of all 2003 editions of the research journal, Nonlinearity. The work performed under this proposal also contained a substantial educational component by contributed significantly to the scientific training of one postdoctoral associate, one Ph.D. student and five undergraduate researchers. One main area of focus in this research was convective flow with time-dependent acceleration. Convection is one class of behavior that can arise from g-jitter effects. Our research focused on studies of Rayleigh-Benard system, which is an important model for understanding thermal convection; studies of this problem in the presence of acceleration modulations provided insight into the nature of g-jitter induced flow and of the effects of modulation and noise on non-equilibrium pattern formation. Our experiments on vertically vibrated Rayleigh-Benard convection demonstrated the existence of two classes of pure flow patterns (synchronous & subharmonic) patterns) that had long been predicted by theory but never before observed experimentally. Detailed studies of ranges of parameters where both classes of patterns exist simultaneously led to the discovery of a new type of patterns (called superlattices) in systems driven out of thermodynamic equilibrium.

Schatz, Michael F.↗

The NASA Astrobiology Institute: early history and organization

The NASA Astrobiology Institute (NAI) was established as a means to advance the field of astrobiology by providing a multidisciplinary, multi-institution, science-directed program, executed by universities, research institutes, and NASA and other government laboratories. The scientific community and NASA defined the science content at several workshops as summarized in the NASA Astrobiology Roadmap. Teams were chosen nationwide, following the recommendations of external review groups, and the research program began in 1998. There are now 16 national Teams and five international affiliated and associated astrobiology institutions. The NAI has attracted an outstanding group of scientific groups and individuals. The Institute facilitates the involvement of the scientists in its scientific and management vision. Its goal is to support basic research and allow the scientists the freedom to select their projects and alter them as indicated by new research. Additional missions include the education of the public, the involvement of students who will be the astrobiologists of future generations, and the development of a culture of collaboration in NAI, a "virtual institute," spread across many sites nationally and internationally.

United States National Aeronautics and Space Admin↗

High-Resolution Satellite Data Open for Government Research

U.S. satellite commercial imagery (CI) with resolution less than 1 meter is a common geospatial reference used by the public through Web applications, mobile devices, and the news media. However, CI use in the scientific community has not kept pace, even though those who are performing U.S. government research have access to these data at no cost.Previously, studies using multiple CI acquisitions from IKONOS-2, Quickbird-2, GeoEye-1, WorldView-1, and WorldView-2 would have been cost prohibitive. Now, with near-global submeter coverage and online distribution, opportunities abound for future scientific studies. This archive is already quite extensive (examples are shown in Figure 1) and is being used in many novel applications.

Data↗

Application of a data base management system to a finite element model

In today's software market, much effort is being expended on the development of data base management systems (DBMS). Most commercially available DBMS were designed for business use. However, the need for such systems within the engineering and scientific communities is becoming apparent. A potential DBMS application that appears attractive is the handling of data for finite element engineering models. The applications of a commercially available, business-oriented DBMS to a structural engineering, finite element model is explored. The model, DBMS, an approach to using the DBMS, advantages and disadvantages are described. Plans for research on a scientific and engineering DBMS are discussed.

Rogers, J. L., Jr.↗