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DOE OSTI2024

Bounds on galaxy stochasticity from halo occupation distribution modeling

The joint probability distribution of matter overdensity and galaxy counts in cells is a powerful probe of cosmology, and the extent to which variance in galaxy counts at fixed matter density deviates from Poisson shot noise is not fully understood. The lack of informed bounds on this stochasticity is currently the limiting factor in constraining cosmology with the galaxy–matter probability distribution function (PDF). We investigate stochasticity in the conditional distribution of galaxy counts along lines of sight with fixed matter density, and we present a halo occupation distribution (HOD)-based approach for obtaining plausible ranges for stochasticity parameters. To probe the high-dimensional space of possible galaxy–matter connections, we derive a set of HODs that conserve the galaxies’ linear bias and number density to produce RED M A G I C-like galaxy catalogs within the A BACUS S UMMIT suite of N -body simulations. We study the impact of individual HOD parameters and cosmology on stochasticity and perform a Monte Carlo search in HOD parameter space subject to the constraints on bias and density. In mock catalogs generated by the selected HODs, shot noise in galaxy counts spans both sub-Poisson and super-Poisson values, ranging from 80% to 133% of Poisson variance for cells with mean matter density. Nearly all of the derived HODs show a positive relationship between local matter density and stochasticity. For galaxy catalogs with higher stochasticity, modeling galaxy bias to second order is required for an accurate description of the conditional PDF of galaxy counts at fixed matter density. The presence of galaxy assembly bias also substantially extends the range of stochasticity in the super-Poisson direction. This HOD-based approach leverages degrees of freedom in the galaxy–halo connection to obtain informed bounds on nuisance model parameters and can be adapted to study other parametrizations of shot noise in galaxy counts, in particular to motivate prior ranges on stochasticity for cosmological analyses.

Britt, Dylan (ORCID:000000019905601X)↗

DOE OSTI2026

Assembly bias and local Primordial non-Gaussianity from DESI DR1 quasars

The analysis of the large-scale clustering of quasars (QSO) observed by the Dark Energy Spectroscopic Instrument (DESI) represents a promising avenue for constraining local Primordial non-Gaussianity (PNG), parameterized by f NL . The signal to be constrained is the scale-dependent bias induced in the 2-point clustering of the considered tracer sample. The resulting constraints on f NL , however, are fully degenerate with the local PNG bias parameter b ϕ , dependent on the assembly bias parameter p. Using IllustrisTNG hydrodynamical simulations, we select a QSO sample reflecting the selection criteria and properties of DESI QSOs, and provide a robust prior for p, and thus for b ϕ , building on the findings of Fondi et al. 2024. We find a distribution with mean p̅ ≃ 1.4 with weak redshift dependence, stable to selection noise and consistent with the expected recent merger history typical of quasar-hosting halos. By comparing with the CAMELS simulations we demonstrate that this prior is robust to astrophysical assumptions and cosmic variance. Finally, applying this prior to the DESI DR1 dataset, we derive updated constraints on local PNG, obtaining f NL = -3.3±9.2.

cosmological parameters from LSS↗

DOE OSTI2020

The Architecture of Metabolism Maximizes Biosynthetic Diversity in the Largest Class of Fungi

Abstract Ecological diversity in fungi is largely defined by metabolic traits, including the ability to produce secondary or “specialized” metabolites (SMs) that mediate interactions with other organisms. Fungal SM pathways are frequently encoded in biosynthetic gene clusters (BGCs), which facilitate the identification and characterization of metabolic pathways. Variation in BGC composition reflects the diversity of their SM products. Recent studies have documented surprising diversity of BGC repertoires among isolates of the same fungal species, yet little is known about how this population-level variation is inherited across macroevolutionary timescales. Here, we applied a novel linkage-based algorithm to reveal previously unexplored dimensions of diversity in BGC composition, distribution, and repertoire across 101 species of Dothideomycetes, which are considered the most phylogenetically diverse class of fungi and known to produce many SMs. We predicted both complementary and overlapping sets of clustered genes compared with existing methods and identified novel gene pairs that associate with known secondary metabolite genes. We found that variation among sets of BGCs in individual genomes is due to nonoverlapping BGC combinations and that several BGCs have biased ecological distributions, consistent with niche-specific selection. We observed that total BGC diversity scales linearly with increasing repertoire size, suggesting that secondary metabolites have little structural redundancy in individual fungi. We project that there is substantial unsampled BGC diversity across specific families of Dothideomycetes, which will provide a roadmap for future sampling efforts. Our approach and findings lend new insight into how BGC diversity is generated and maintained across an entire fungal taxonomic class.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Status of the muon neutrino charged-current zero mesons cross section measurement in the NOvA near detector

NOvA is a long-baseline accelerator neutrino experiment at Fermilab whose physics goals include precision neutrino oscillation as well as cross-section measurements. We present the status of the measurement of muon neutrino charged-current cross section with zero mesons in the final state at the NOvA near detector. This measurement will be made with respect to the kinematics of the final state particles. Our chosen interaction channel is especially sensitive to quasielastic and meson exchange current interactions and will provide a handle for constraining the cross section systematic uncertainties in oscillation analyses in current and future experiments. For particle identification, we use a convolutional neural network (CNN) trained on individual particles simulated in the NOvA near detector that allows us to select the desired signal while reducing the potential bias from neutrino interaction modeling. Charged pion background constraining is further improved via Michel electron tagging.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2024

Status of the Muon Neutrino Charged-Current Mesonless Cross Section Measurement in the NOvA Near Detector

NOvA is a long-baseline accelerator neutrino experiment at Fermilab whose physics goals include precision neutrino oscillation as well as cross-section measurements. We present the status of the measurement of a muon neutrino charged-current cross section with zero mesons in the final state at the NOvA near detector. This measurement is being made with respect to the kinematics of the final state muon. The chosen interaction channel is especially sensitive to quasielastic and meson exchange current interactions and aims to provide experimental constraints for the development of models of neutrino interactions. It will also provide a handle for constraining cross section systematic uncertainties in oscillation analyses in current and future experiments. For particle identification, we use a convolutional neural network (CNN) trained on individual particles simulated in the NOvA near detector that allows us to select the desired signal while reducing the potential bias from neutrino interaction modeling. Charged pion background constraining is further improved via Michel electron tagging.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2024

Status of the Muon Neutrino Charged-Current Zero Mesons Cross Section at the NOvA Near Detector

NOvA is a long-baseline accelerator neutrino experiment at Fermilab whose physics goals include precision neutrino oscillation as well as cross-section measurements. We present the status of the measurement of a muon neutrino charged-current cross section with zero mesons in the final state at the NOvA near detector. This measurement is being made with respect to the kinematics of the final state muon. The chosen interaction channel is especially sensitive to quasielastic and meson exchange current interactions and aims to provide experimental constraints for the development of models of neutrino interactions. It will also provide a handle for constraining cross section systematic uncertainties in oscillation analyses in current and future experiments. For particle identification, we use a convolutional neural network (CNN) trained on individual particles simulated in the NOvA near detector that allows us to select the desired signal while reducing the potential bias from neutrino interaction modeling. Charged pion background constraining is further improved via Michel electron tagging.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2022

The Influence of 10 Unique Chemical Elements in Shaping the Distribution of Kepler Planets

The chemical abundances of planet-hosting stars offer a glimpse into the composition of planet-forming environments. To further understand this connection, we make the first ever measurement of the correlation between planet occurrence and chemical abundances for ten different elements (C, Mg, Al, Si, S, K, Ca, Mn, Fe, and Ni). Leveraging data from the Apache Point Observatory Galactic Evolution Experiment (APOGEE) and Gaia to derive precise stellar parameters (${\sigma }_{{R}_{\star }}\approx 2.3 \% $, ${\sigma }_{{M}_{\star }}\approx 4.5 \% $) for a sample of 1018 Kepler Objects of Interest, we construct a sample of well-vetted Kepler planets with precisely measured radii (${\sigma }_{{R}_{p}}\approx 3.4 \% $). After controlling for biases in the Kepler detection pipeline and the selection function of the APOGEE survey, we characterize the relationship between planet occurrence and chemical abundance as the number density of nuclei of each element in a star's photosphere raised to a power, β. varies by planet type, but is consistent within our uncertainties across all ten elements. For hot planets (P = 1–10 days), an enhancement in any element of 0.1 dex corresponds to an increased occurrence of ≈20% for super-Earths (Rp = 1–1.9 R⊕) and ≈60% for sub-Neptunes (Rp = 1.9–4 R⊕). Trends are weaker for warm (P = 10–100 days) planets of all sizes and for all elements, with the potential exception of sub-Saturns (Rp = 4–8 R⊕). Finally, we conclude this work with a caution to interpreting trends between planet occurrence and stellar age due to degeneracies caused by Galactic chemical evolution and make predictions for planet occurrence rates in nearby open clusters to facilitate demographics studies of young planetary systems.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2024

The Dark Energy Survey Supernova Program: Cosmological Biases from Host Galaxy Mismatch of Type Ia Supernovae

Abstract Redshift measurements, primarily obtained from host galaxies, are essential for inferring cosmological parameters from type Ia supernovae (SNe Ia). Matching SNe to host galaxies using images is nontrivial, resulting in a subset of SNe with mismatched hosts and thus incorrect redshifts. We evaluate the host galaxy mismatch rate and resulting biases on cosmological parameters from simulations modeled after the Dark Energy Survey 5 Yr (DES-SN5YR) photometric sample. For both DES-SN5YR data and simulations, we employ the directional light radius method for host galaxy matching. In our SN Ia simulations, we find that 1.7% of SNe are matched to the wrong host galaxy, with redshift differences between the true and matched hosts of up to 0.6. Using our analysis pipeline, we determine the shift in the dark energy equation of state parameter (Δ w ) due to including SNe with incorrect host galaxy matches. For SN Ia–only simulations, we find Δ w = 0.0013 ± 0.0026 with constraints from the cosmic microwave background. Including core-collapse SNe and peculiar SNe Ia in the simulation, we find that Δ w ranges from 0.0009 to 0.0032, depending on the photometric classifier used. This bias is an order of magnitude smaller than the expected total uncertainty on w from the DES-SN5YR sample of ∼0.03. We conclude that the bias on w from host galaxy mismatch is much smaller than the uncertainties expected from the DES-SN5YR sample, but we encourage further studies to reduce this bias through better host-matching algorithms or selection cuts.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2026

Measurement of the muon neutrino charged-current mesonless cross section in the NOvA near detector

NOvA is a long-baseline accelerator neutrino experiment at Fermilab. Its physics goals include precision neutrino oscillation measurements, neutrino interaction cross-section measurements and beyond Standard Model explorations. We present a measurement of muon neutrino charged-current cross section with zero mesons in the final state at the NOvA near detector. This measurement is performed as a function of the kinematics of the final state muon. Our chosen interaction channel is especially sensitive to quasielastic and meson exchange current interactions and it provides handles for constraining the cross section systematic uncertainties in oscillation analyses in present and future experiments. For particle identification, we use a convolutional neural network (CNN) trained on individual particles simulated in the NOvA Near detector. This allows us to select the desired signal while reducing the potential bias from neutrino interaction modeling. We study strategies for constraining the remaining charged-pion background via Michel electron information in a template fitting approach. The main experimental result is a two-dimensional differential cross section as a function of final-state muon kinetic energy and polar angle. The parameters of this measurement, including binning and unfolding, were optimized to reduce the expected systematic uncertainty in the total cross section. The final result shows good agreement with the main GENIE-based simulation framework that was independently fine-tuned in NOvA. We finally propose improvements and subsequent steps that build on this analysis and further dissect the final states of neutrino interactions. This work has been supported by US DOE grant DE-SC0015684.

Sánchez Falero, Sebastián Jesús [Iowa State U.]↗

DOE OSTI2020

Properties of protein unfolded states suggest broad selection for expanded conformational ensembles

Much attention is being paid to conformational biases in the ensembles of intrinsically disordered proteins. However, it is currently unknown whether or how conformational biases within the disordered ensembles of foldable proteins affect function in vivo. Recently, we demonstrated that water can be a good solvent for unfolded polypeptide chains, even those with a hydrophobic and charged sequence composition typical of folded proteins. These results run counter to the generally accepted model that protein folding begins with hydrophobicity-driven chain collapse. Here we investigate what other features, beyond amino acid composition, govern chain collapse. We found that local clustering of hydrophobic and/or charged residues leads to significant collapse of the unfolded ensemble of pertactin, a secreted autotransporter virulence protein from Bordetella pertussis , as measured by small angle X-ray scattering (SAXS). Sequence patterns that lead to collapse also correlate with increased intermolecular polypeptide chain association and aggregation. Crucially, sequence patterns that support an expanded conformational ensemble enhance pertactin secretion to the bacterial cell surface. Similar sequence pattern features are enriched across the large and diverse family of autotransporter virulence proteins, suggesting sequence patterns that favor an expanded conformational ensemble are under selection for efficient autotransporter protein secretion, a necessary prerequisite for virulence. More broadly, we found that sequence patterns that lead to more expanded conformational ensembles are enriched across water-soluble proteins in general, suggesting protein sequences are under selection to regulate collapse and minimize protein aggregation, in addition to their roles in stabilizing folded protein structures.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

The metallicity distribution in the core of the Sagittarius dwarf spheroidal: Minimising the metallicity biases

We present the metallicity and radial velocity for 450 bona fide members of the Sagittarius dwarf spheroidal (Sgr dSph) galaxy, measured from high-resolution spectra (R ≃ 18 000) obtained with FLAMES at the VLT. The targets were carefully selected (a) to sample the core of the main body of Sgr dSph while avoiding contamination from the central stellar nucleus, and (b) to prevent any bias on the metallicity distribution by selecting targets based on their Gaia parallax and proper motions. All the targets selected in this way were confirmed as radial velocity members. We used this sample to derive the first metallicity distribution of the core of Sgr dSph, which is virtually unaffected by metallicity biases. The observed distribution ranges from [Fe/H] ≃ -2.3 to [Fe/H] ≃ 0.0, with a strong, symmetric, and relatively narrow peak around [Fe/H] ≃ -0.5 and a weak and extended metal-poor tail, in which only 13.8 ± 1.9% of the stars have [Fe/H] < -1.0. We confirm previous evidence of correlations between chemical and kinematical properties of stars in the core of Sgr. In our sample, stars with [Fe/H] ≥ -0.6 display a lower velocity dispersion and a higher rotation amplitude than those with [Fe/H] < - 0.6, confirming previous suggestions of disk/halo structure for the progenitor of the system.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2026

Dark Energy Survey Year 6 Results: MagLim++ Lens Sample Selection and Measurements of Galaxy Clustering

Galaxy clustering is a sensitive probe of the expansion history and growth of structure of the universe, and key degeneracies can be broken by combining these data with measurements of cosmic shear and galaxy-galaxy lensing (a so-called 3$\times$2pt analysis). The largest and least biased statistical samples of galaxies for use in clustering analyses can be collected photometrically through large imaging surveys. However, selecting clean photometric subsamples for cosmology are crucial for avoiding contamination that can bias cosmological constraints. Here we present the MagLim++ galaxy sample, selected to optimize for cosmological constraining power and incorporating an array of novel quality cuts to identify and remove residual contamination. This sample comes from the full six years of observations from the Dark Energy Survey. We present measurements of the two-point angular clustering ($w(θ)$) of 9,186,205 galaxies distributed over 4031 sq. degrees and in six tomographic redshift bins centered at $\bar{z}\approx$ [0.31, 0.44, 0.62, 0.78, 0.90, 1.01]. These measurements are used as part of the 3$\times$2pt and other DES Y6 legacy cosmological analyses in companion works. We describe the battery of null tests and mitigation schemes implemented to address observational, astrophysical, and methodological systematics in the analysis. The resulting $w(θ)$ measurements have a S/N = 149 (90.2 for linear scales only), which we use to place galaxy-clustering-only constraints on the matter density of the Universe, $Ω_m=0.311^{+0.023}_{-0.035}$, and amplitude of galaxy clustering in each redshift bin, $b_iσ_8=[1.16^{+0.04}_{-0.06},\ 1.40^{+0.04}_{-0.06},\ 1.57^{+0.04}_{-0.06},\ 1.59^{+0.04}_{-0.05},\ 1.50^{+0.04}_{-0.05},\ 1.74^{+0.06}_{-0.08}]$.

Weaverdyck, N. [BCCP, Berkeley; UC, Berkeley; LBL,↗

DOE OSTI2022

Host Dark Matter Halos of SDSS Red and Blue Quasars: No Significant Difference in Large-scale Environment

The observed optical colors of quasars are generally interpreted in one of two frameworks: unified models that attribute the color to the random orientation of the accretion disk along the line of sight, and evolutionary models that invoke connections between quasar systems and their environments. We test these schemas by probing the dark matter halo environments of optically selected quasars as a function of g – i optical color by measuring the two-point correlation functions of ~0.34 million eBOSS quasars as well as the gravitational deflection of cosmic microwave background photons around ~0.66 million XDQSO photometric quasar candidates. We do not detect a trend of halo bias with optical color through either analysis, finding that optically selected quasars at 0.8 < z < 2.2 occupy halos of characteristic mass M h ~ 3 × 10 12 h –1 M ⊙ regardless of their color. This result implies that a quasar's large-scale halo environment is not strongly connected to its observed optical color. We also confirm the findings of fundamental differences in the radio properties of red and blue quasars by stacking 1.4 GHz FIRST images at their positions, suggesting the observed differences cannot be attributed to orientation. Instead, the differences between red and blue quasars likely arise on nuclear-galactic scales, perhaps owing to reddening by a nuclear dusty wind. Finally, we show that optically selected quasars' halo environments are also independent of their r – W2 optical–infrared colors, while previous work has suggested that mid-infrared-selected obscured quasars occupy more massive halos. We discuss the implications of this result for models of quasar and galaxy coevolution.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2026

Extracting the Breakout Distance from the ECOT Trajectories: Gaussian Process Regression Approach

Enhanced Corner Turning (ECOT) experiments provide an important metric of performance of high explosive (HE) formulations. The breakout distance is a single scalar value that characterizes the corner turning efficiency of an HE. Extracting the breakout distance from the raw ECOT results, whether experimental or simulated, is a conceptually straightforward procedure which, however, is non-unique, especially in the presence of noise. More specifically, this procedure involves numerical smoothing and selecting particular values for parameters of this smoothing introduces human bias. In this work, we propose to use the Gaussian process regression to analyze ECOT results. This analysis involves the effective smoothing of the data, thus allowing for accurate extraction of the breakout distance. Most importantly, the parameters of this smoothing can be inferred from the ECOT data itself, rendering the approach effectively parameter-free and thus diminishing the human bias. An additional benefit of the Gaussian process regression, being a statistical inference method, is that not just the value of the breakout distance, but also its confidence interval can be extracted from the data. This report introduces the Gaussian process regression, as applied to ECOT, and demonstrates its usefulness by extracting the breakout distances for a selection of experimental and simulated data.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗

DOE OSTI2021

Methods and devices configured to operated scanning tunneling microscopes using out-of-bandwidth frequency components added to bias voltage and related software

In the system and method disclosed, an ultrahigh vacuum (UHV) scanning tunneling microscope (STM) tip is used to selectively desorb hydrogen atoms from the Si(100)-2X1:H surface by injecting electrons at a negative sample bias voltage. A new lithography method is disclosed that allows the STM to operate under imaging conditions and simultaneously desorb H atoms as required. A high frequency signal is added to the negative sample bias voltage to deliver the required energy for hydrogen removal. The resulted current at this frequency and its harmonics are filtered to minimize their effect on the operation of the STM's feedback loop. This approach offers a significant potential for controlled and precise removal of hydrogen atoms from a hydrogen-terminated silicon surface and thus may be used for the fabrication of practical silicon-based atomic-scale devices.

Moheimani, Seyed Omid Reza↗

DOE OSTI2023

Methods and devices configured to operated scanning tunneling microscopes using out-of-bandwidth frequency components added to bias voltage and related software

Moheimani, Seyed Omid Reza↗

DOE OSTI2024

Constraining Galaxy-Halo connection using machine learning

We investigate the potential of machine learning (ML) methods to model small-scale galaxy clustering for constraining Halo Occupation Distribution (HOD) parameters. Our analysis reveals that while many ML algorithms report good statistical fits, they often yield likelihood contours that are significantly biased in both mean values and variances relative to the true model parameters. This highlights the importance of careful data processing and algorithm selection in ML applications for galaxy clustering, as even seemingly robust methods can lead to biased results if not applied correctly. ML tools offer a promising approach to exploring the HOD parameter space with significantly reduced computational costs compared to traditional brute-force methods if their robustness is established. Using our ANN-based pipeline, we successfully recreate some standard results from recent literature. Properly restricting the HOD parameter space, transforming the training data, and carefully selecting ML algorithms are essential for achieving unbiased and robust predictions. Among the methods tested, artificial neural networks (ANNs) outperform random forests (RF) and ridge regression in predicting clustering statistics, when the HOD prior space is appropriately restricted. We demonstrate these findings using the projected two-point correlation function (w p (r p )), angular multipoles of the correlation function (ξ ℓ (r)), and the void probability function (VPF) of Luminous Red Galaxies from Dark Energy Spectroscopic Instrument mocks. Our results show that while combining w p (r p ) and VPF improves parameter constraints, adding the multipoles ξ 0 , ξ 2 , and ξ 4 to w p (r p ) does not significantly improve the constraints.

cosmology↗

DOE OSTI2021

Redshift evolution of the underlying type Ia supernova stretch distribution

The detailed nature of type Ia supernovae (SNe Ia) remains uncertain, and as survey statistics increase, the question of astrophysical systematic uncertainties arises, notably that of the evolution of SN Ia populations. We study the dependence on redshift of the SN Ia SALT2.4 light-curve stretch, which is a purely intrinsic SN property, to probe its potential redshift drift. The SN stretch has been shown to be strongly correlated with the SN environment, notably with stellar age tracers. We modeled the underlying stretch distribution as a function of redshift, using the evolution of the fraction of young and old SNe Ia as predicted using the SNfactory dataset, and assuming a constant underlying stretch distribution for each age population consisting of Gaussian mixtures. We tested our prediction against published samples that were cut to have marginal magnitude selection effects, so that any observed change is indeed astrophysical and not observational in origin. In this first study, there are indications that the underlying SN Ia stretch distribution evolves as a function of redshift, and that the age drifting model is a better description of the data than any time-constant model, including the sample-based asymmetric distributions that are often used to correct Malmquist bias at a significance higher than 5σ. The favored underlying stretch model is a bimodal one, composed of a high-stretch mode shared by both young and old environments, and a low-stretch mode that is exclusive to old environments. The precise effect of the redshift evolution of the intrinsic properties of a SN Ia population on cosmology remains to be studied. The astrophysical drift of the SN stretch distribution does affect current Malmquist bias corrections, however, and thereby the distances that are derived based on SN that are affected by observational selection effects. We highlight that this bias will increase with surveys covering increasingly larger redshift ranges, which is particularly important for the Large Synoptic Survey Telescope.

79 ASTRONOMY AND ASTROPHYSICS↗