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At least 163 records · Page 9

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DOE OSTI2021

Autocrine and paracrine interferon signalling as ‘ring vaccination’ and ‘contact tracing’ strategies to suppress virus infection in a host

The innate immune response, particularly the interferon response, represents a first line of defence against viral infections. The interferon molecules produced from infected cells act through autocrine and paracrine signalling to turn host cells into an antiviral state. Although the molecular mechanisms of IFN signalling have been well characterized, how the interferon response collectively contribute to the regulation of host cells to stop or suppress viral infection during early infection remain unclear. Here, we use mathematical models to delineate the roles of the autocrine and the paracrine signalling, and show that their impacts on viral spread are dependent on how infection proceeds. In particular, we found that when infection is well-mixed, the paracrine signalling is not as effective; by contrast, when infection spreads in a spatial manner, a likely scenario during initial infection in tissue, the paracrine signalling can impede the spread of infection by decreasing the number of susceptible cells close to the site of infection. Furthermore, we argue that the interferon response can be seen as a parallel to population-level epidemic prevention strategies such as ‘contact tracing’ or ‘ring vaccination’. Thus, our results here may have implications for the outbreak control at the population scale more broadly.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

Correlating gravitational wave and gamma-ray signals from primordial black holes

Asteroid-mass primordial black holes (PBHs) can explain the observed dark matter abundance while being consistent with the current indirect detection constraints. These PBHs can produce gamma-ray signals from Hawking radiation that are within the sensitivity of future measurements by the AMEGO and e-ASTROGAM experiments. PBHs which give rise to such observable gamma-ray signals have a cosmic origin from large primordial curvature fluctuations. There must then be a companion, stochastic gravitational wave (GW) background produced by the same curvature fluctuations. We demonstrate that the resulting GW signals will be well within the sensitivity of future detectors such as LISA, DECIGO, BBO, and the Einstein Telescope. The multimessenger signal from the observed gamma-rays and GWs will allow a precise measurement of the primordial curvature perturbation that produces the PBH. Indeed, so we argue that the resulting correlation between the two types of observations can provide a smoking-gun signal of PBHs.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2025

Integrated Routing and Traffic Signal Control for CAVs via Reinforcement Learning Approach

Incorporating Connected and Automated Vehicles (CAVs) into urban traffic networks presents opportunities and challenges for traffic management systems. This paper aims to develop an integrated routing and traffic signal control system designed explicitly for CAVs, utilizing a Reinforcement Learning (RL) approach. The objective is to enhance traffic flow and improve overall transportation efficiency in the controlled areas. We propose an innovative framework that employs the Deep Reinforcement Learning (DRL) algorithm, especially the Deep Q-network (DQN), to dynamically adjust the number of vehicles in the routes and the duration of traffic signals. Our simulation results demonstrate that a DQN agent successfully optimizes the number of vehicles in the routes and traffic signal timings of traffic signal controllers, eventually reducing total travel time. The study illustrates the potential usage of RL-based systems in managing routing and traffic signals for CAVs, offering a promising opportunity for future urban traffic management strategies.

Park, Jiho [New York University]↗

DOE OSTI2026

Secure Wireless Communication Using Distributed Coherent Transmission and Spatial Signal Decomposition

We present a new approach to secure wireless communications using coherent distributed transmission of signals that are spatially decomposed between a two-element distributed antenna array. High-accuracy distributed coordination of microwave wireless systems supports the ability to transmit different parts of a signal from separate transmitters such that they combine coherently at a designated destination. In this article, we explore this concept using a two-element coherent distributed phased array where each of the two transmitters sends a separate component of a communication signal, where each symbol is decomposed into a sum of two pseudorandom signal vectors, the coherent summation of which yields the intended symbol. By directing the transmission to an intended receiver using distributed beamforming, the summation of the two vector components is largely confined to a spatial region at the destination receiver. We implement the technique in a $50−λ$ array operating at 3 GHz. We evaluate the symbol error rate (SER) in 2-D space through simulation and measurement, showing that the approach yields a spatially confined secure region where the information is recoverable (i.e., the received signal has low SER), and outside of which the information is unrecoverable (high SER). The proposed system is also compared against a traditional beamforming system where each node sends the same data. We validate experimentally that our approach achieves a low SER of 0.0082 at broadside and an SER above 0.25 at all other locations compared to a traditional beamforming approach that achieves a SER of 0 at all locations measured.

Engineering - Electronic and electrical engineerin↗

DOE OSTI2021

Structural analysis of the PTEN:P-Rex2 signaling complex reveals how cancer-associated mutations coordinate to hyperactivate Rac1

The dual-specificity phosphatase PTEN functions as a tumor suppressor by hydrolyzing PI(3,4,5)P 3 to PI(4,5)P 2 to inhibit PI3K-AKT signaling and cellular proliferation. P-Rex2 is a guanine nucleotide exchange factor for Rho GTPases and can be activated by Gβγ subunits downstream of G protein–coupled receptor signaling and by PI(3,4,5)P 3 downstream of receptor tyrosine kinases. The PTEN:P-Rex2 complex is a commonly mutated signaling node in metastatic cancer. Assembly of the PTEN:P-Rex2 complex inhibits the activity of both proteins, and its dysregulation can drive PI3K-AKT signaling and cellular proliferation. Here, using cross-linking mass spectrometry and functional studies, we gained mechanistic insights into PTEN:P-Rex2 complex assembly and coinhibition. We found that PTEN was anchored to P-Rex2 by interactions between the PDZ-interacting motif in the PTEN C-terminal tail and the second PDZ domain of P-Rex2. This interaction bridged PTEN across the P-Rex2 surface, preventing PI(3,4,5)P 3 hydrolysis. Conversely, PTEN both allosterically promoted an autoinhibited conformation of P-Rex2 and blocked its binding to Gβγ. In addition, we observed that the PTEN-deactivating mutations and P-Rex2 truncations combined to drive Rac1 activation to a greater extent than did either single variant alone. These insights enabled us to propose a class of gain-of-function, cancer-associated mutations within the PTEN:P-Rex2 interface that uncouple PTEN from the inhibition of Rac1 signaling.

D’Andrea, Laura↗

DOE OSTI2022

Effect of the pump beam profile and wavefront on the amplified signal wavefront in optical parametric amplifiers

We present a theoretical and experimental analysis of the signal phase introduced by the pump-beam wavefront and spatial profile during optical parametric amplification (OPA) process. The theory predicts the appearance of an additional wavefront in the amplified signal beam that is proportional to the spatial derivative of the pump-beam wavefront. The effect of the pump-beam profile on the signal-beam wavefront is also investigated. Our experiments tested these theoretical predictions by comparing the wavefront of the signal beam before and after amplification in a multi-joule broadband OPA. The measured signal wavefront was shown to have the expected dependence on the pump-beam profile and wavefront. These results can be considered when designing petawatt-scale ultrabroadband optical parametric chirped-pulse–amplification systems.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2020

SIGNAL Game Manual

SIGNAL is a first of its kind experimental wargame developed as part of the Project on Nuclear Gaming (PoNG). In this document we describe the rules and game mechanics associated with the online version of SIGNAL created by team members from the University of California, Berkeley, Sandia National Laboratories, and Lawrence Livermore National Laboratory and sponsored by the Carnegie Corporation of New York. The game was developed as part of a larger research project to develop the experimental wargaming methodology and explore its use on a model scenario: the impact of various military capabilities on conflict escalation dynamics. We discuss the results of this research in a forthcoming paper that will include this manual as an appendix. It is our hope that this manual will both contribute to our players' understanding of the game prior to play and that it will allow for replication of the SIGNAL game environment for future research purposes. The manual begins by introducing the terminology used throughout the document. It then outlines the technical requirements required to run SIGNAL. The following section provides a description of the map, resources, infrastructure, tokens, and action cards used in the game environment. The manual then describes the user interface including the chat functions, trade mechanism, currency and population counts necessary for players to plan their actions. It then turns to the sequence of player actions in the game describing the signaling, action, and upkeep phases that comprise each round of play. It then outlines the use of diplomacy including alliances with minor states and trade between players. The manual also describes the process for scoring the game and determining the winner. The manual concludes with tips for players to remember as they embark upon playing the game.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

Examining ICARUS Cosmic Muon Signal Shapes

In the search for new physics, such as sterile neutrinos, we must compare our experimental data to the case where this new physics does not exist, which is provided by simulations. However, our detectors and simulations are not perfect, so we need to be able to differentiate imperfections in our simulations, detector effects, and unknown unknowns from new physics. Thus, we need to quantify ICARUS detector systematic uncertainties; in other words, we need to know how much difference between experiment and simulation we can expect due to only detector systematics, so when we see differences greater than this, we can be confident they are due to new physics. To calculate this uncertainty, we study the signals produced in ICARUS by cosmic muons, since these muons are well understood. Ideally, we want to fit these waveforms as Gaussians and compare the fits from experimental data to fits from simulations to calculate the uncertainties, but first, we need to know how accurately these curve s can be described by Gaussians. We examined the peak and the full width at half maximum (FHWM) of signals from simulations, and we produced plots of the distribution of peaks and FHWMs for these signals. We further studied how the peaks and FHWMs varied depending on where the signal came from in the detector. Ultimately, by comparing the actual distribution of peaks and FHWMs to the distribution predicted by the Gaussian fits, we hope to determine how well these signals can be described as Gaussians.

Patino, Nicolas↗

DOE OSTI2023

Low Energy LArTPC Signal Detection Using Anomaly Detection

Extracting low-energy signals from LArTPC detectors is useful, for example, for detecting supernova events or calibrating the energy scale with argon-39. However, it is difficult to efficiently extract the signals because of noise. We propose using a 1DCNN to select wire traces that have a signal. This efficiently suppresses the background while still being efficient for the signal. This is then followed by a 1D autoencoder to denoise the wire traces. At that point the signal waveform can be cleanly extracted. In order to make this processing efficient, we implement the two networks on an FPGA. In particular we use hls4ml to produce HLS from the Keras models for both the 1DCNN and the autoencoder. We deploy them on an AMD/Xilinx Alveo U55C using the Vitis software platform.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2025

Beam Signal Recovery Using Wiener Deconvolution

This project explores the use of Wiener deconvolution to recover an original signal that has been distorted by a known transfer function and by noise. A simulated Gaussian pulse was used as the test signal, and a transfer function was applied in the frequency domain to model system distortion. Controlled noise was then introduced to approximate real-world signal degradation. A Wiener filter was implemented to reverse the effects of the transfer function while minimizing the influence of noise. The recovered signal was compared to the original pulse to evaluate the effectiveness of the filter. Results demonstrate that Wiener deconvolution offers a stable and effective approach to signal recovery, balancing complete transfer function inversion and noise suppression.

Campbell, Savanna [El Camino Coll.]↗

DOE OSTI2025

Toroid Signal Processing Container with Redis Integration

This report presents the research, design, and implementation of a Toroid Signal Processing Container with Redis Integration, conducted during my internship assignment. The project focused on developing a modular signal processing sys- tem capable of performing baseline correction, droop compensation, and real- time data communication for beam diagnostic signals. Using Redis as a message broker and configuration manager, the system ensures modularity, scalability, and efficient inter-process communication. Signal correction algorithms, such as Asymmetric Least Squares (ALS) baseline smoothing and a numerical droop correction approach, were implemented and tested using Linac beam data. The results confirm that this system improves signal fidelity and supports real-time analysis requirements, offering valuable contributions to the field of beam instrumentation and data acquisition systems.

Bowers, Elliot [Cabrillo Coll.]↗

DOE OSTI2020

Detection, monitoring, and determination of location of changes in metallic structures using multimode acoustic signals

Methods for detection, monitoring, and determination of location of changes in rigid structures with arbitrarily complex geometries are described. Implementations include locating acoustic transducers that generate and receive acoustic signals at multiple locations along a surface of the rigid structure, wherein longitudinal spacing between the transducer locations define measurement zones. Acoustic signals with chosen amplitude-time-frequency characteristics excite multiple vibration modes in the structure within each zone. Small mechanical changes in the inspection zones lead to scattering and attenuation of broadband acoustic signals, which are detectable as changes in received signal characteristics as part of a through-transmission technique. Additional use of short, narrowband pulse acoustic signals as part of a pulse-echo technique allows determination of the relative location of the mechanical change within each zone based on the differential delay profiles.

42 ENGINEERING↗

DOE OSTI2022

AviSense: A Real-time System for Detection, Classification, and Analysis of Aviation Signals

We present AviSense, an SDR-based real-time, versatile system for monitoring aviation bands. AviSense detects and characterizes signal activities to enable practical and effective anomaly detection. We identify and tackle the challenges posed by a diverse set of critical aviation bands and technologies. We evaluate our methodology with real-world aviation signal measurements and demonstrate that we can classify aviation signals as normal with 99% accuracy. We also provide an exhaustive evaluation of our anomalous signal detection capability and show that we can accurately classify anomalous signals with 99% accuracy, with few exceptions. We also demonstrate that AviSense can effectively distinguish between different types of anomalies. We build a prototype implementation of AviSense for distributed monitoring.

42 ENGINEERING↗

DOE OSTI2020

Software-Defined Ultrasonic Communication System Based on Time-reversal Signal Processing

Ultrasonic communication through solid channels suffers from channel dispersion, attenuation, and multipath effect. For example, in elbow shape pipes or complex structures, the elastic waves are reflected and reverberated in multipath resulting in a major dispersion of the signals. In solid channels such as flat bar, multipath propagation is the main reason for bit-wavelet spreading and intersymbol interference (ISI). The conventional modulation method like OOK (on-off-keying) or PSK (phase-shift-keying) fails to provide a useful Signal-to-Noise Ratio (SNR). Time-reversal (TR) signal processing method is a promising technique that can compress the spreading of the bit-wavelet and strengthen the peak signal energy on the receiver. In this study, Finite Element Analysis (FEA) using ABAQUS software tools is used to characterize the bit-wavelet spreading effect caused by dispersive communication channels. Also, this study presents the impact of TR ultrasonic communication as a function of excitation pulse width, channel length, and carrier frequency through a flat-bar channel. A Software-Defined System-on-Chip (SD-SoC) platform is examined as a viable solution for the low-complexity and energy-efficient ultrasonic communication system. The proposed TR based SD-SoC ultrasonic communication system can make full use of signal dispersion for peak performance by minimizing the ISI within a dispersive and reverberant metal channel.

FEM simulation↗

DOE OSTI2021

Detection, monitoring, and determination of location of changes in metallic structures using multimode acoustic signals

Acoustic transducers generate and receive acoustic signals at multiple locations along a surface of rigid structure, wherein longitudinal spacing between transducer locations define measurement zones. Acoustic signals with chosen amplitude-time-frequency characteristics excite multiple vibration modes in the structure within each zone. Small mechanical changes in inspection zones lead to scattering and attenuation of broadband acoustic signals, which are detectable as changes in received signal characteristics as part of a through-transmission technique. Additional use of short, narrowband pulse acoustic signals as part of a pulse-echo technique allows determination of the relative location of the mechanical change within each zone based on the differential delay profiles. For accurate acoustic modeling and simulation, the mesh size, time step, time delay, and time-window size are optimized. Frequency normalization of the Short-Time Fourier Transform of acoustic response output improves experiment-simulation cross-validation. Applications of the method to structures with arbitrarily complex geometries are also demonstrated.

Findikoglu, Alp Tugrul↗

DOE OSTI2021

Offline Arterial Signal Timing Optimization based on Virtual Phase Link Model - A Real-world Case Study

Conventional signal timing for arterial usually takes bottom-up approaches. Engineers optimize each individual intersection first and then coordinate them by adjusting the offsets. This work is based on the Virtual Phase-Link (VPL) model, a street traffic model designed for online traffic model predictive control, to obtain a top-down offline arterial signal timing. We Studied the Shallowford Rd. in Chattanooga, TN and found that the inconsistency in intersection capacities along the arterial could lead to some intersections becoming bottlenecks. Signal timing is a significant factor that affect the intersection capacities. We realized that the VPL-based model can guarantee the consistency in intersections along an arterial. We therefore adopted the VPL-based model and developed an offline signal timing optimization approach. The proposed timing derived from the VPL-based offline signal timing optimization showed very good results in simulation. The Chattanooga Department of Transportation adopted the optimized timing obtained from the proposed approach and gave positive feedbacks to the research team. We also collected field experiment data, which demonstrated overall energy reductions and speed improvements on some sections of the Shallowford Rd. arterial. We will continue the experiment when the COVID-19 pandemic impact subsides to have a more robust quantitative evaluation.

Wang, Qichao↗

DOE OSTI2025

Toroid Signal Processing Container with Redis Integration

Bowers, Elliot [Cabrillo Coll.; Fermilab]↗

DOE OSTI2025

Wiener Filter Deconvolution for Analog Signals

This project explores the use of Wiener deconvolution to recover an original signal that has been distorted by a known transfer function and by noise. A simulated Gaussian pulse was used as the test signal, and a transfer function was applied in the frequency domain to model the system distortion. Controlled noise was then introduced to approximate real-world signal degradation. A Wiener filter was implemented to reverse the effects of the transfer function while minimizing the influence of noise. The recovered signal was compared with the original pulse to evaluate the effectiveness of the filter. The results demonstrate that Wiener deconvolution offers a stable and effective approach to signal recovery, balancing complete transfer function inversion and noise suppression.

Campbell, Savanna [Fermilab]↗