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At least 163 records · Page 9

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DOE OSTI2023

Spray‐induced gene silencing to identify powdery mildew gene targets and processes for powdery mildew control

Abstract Spray‐induced gene silencing (SIGS) is an emerging tool for crop pest protection. It utilizes exogenously applied double‐stranded RNA to specifically reduce pest target gene expression using endogenous RNA interference machinery. In this study, SIGS methods were developed and optimized for powdery mildew fungi, which are widespread obligate biotrophic fungi that infect agricultural crops, using the known azole‐fungicide target cytochrome P450 51 (CYP51) in the Golovinomyces orontii–Arabidopsis thaliana pathosystem. Additional screening resulted in the identification of conserved gene targets and processes important to powdery mildew proliferation: apoptosis‐antagonizing transcription factor in essential cellular metabolism and stress response; lipid catabolism genes lipase a , lipase 1 , and acetyl‐CoA oxidase in energy production ; and genes involved in manipulation of the plant host via abscisic acid metabolism ( 9‐cis‐epoxycarotenoid dioxygenase , xanthoxin dehydrogenase , and a putative abscisic acid G‐protein coupled receptor ) and secretion of the effector protein, effector candidate 2 . Powdery mildew is the dominant disease impacting grapes and extensive powdery mildew resistance to applied fungicides has been reported. We therefore developed SIGS for the Erysiphe necator–Vitis vinifera system and tested six successful targets identified using the G. orontii–A. thaliana system. For all targets tested, a similar reduction in powdery mildew disease was observed between systems. This indicates screening of broadly conserved targets in the G. orontii–A. thaliana pathosystem identifies targets and processes for the successful control of other powdery mildew fungi. The efficacy of SIGS on powdery mildew fungi makes SIGS an exciting prospect for commercial powdery mildew control.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

A Multi-Objective Bayesian Optimized Human Assessed Multi-Target Generated Spectral Recommender System for Rapid Pareto Discoveries of Material Properties

Optimization for different tasks like material characterization, synthesis, and functional properties for desired applications over multi-dimensional control parameter and function spaces need a rapid strategic search through active learning. However, in all cases prior to optimization, the target material properties are assumed known and fixed, which mostly deviates from real-world scenarios in material synthesis. This can be critical for running expensive experiments on new materials, when the experimental results are fuzzy for any scientific outcomes due to improper target setting, ultimately wasting time and cost. The failure rate and cost are even higher over exploring on multi-target space, where we want to learn the pareto among multiple properties, to jointly optimize during material synthesis for desired applications. To address the challenge, here we introduce the human-operator attempt flexibility in the active learning based automated experiment framework, with generating multiple human assessed targets through a voting-based recommender system during real-time microscope measurements over the large material image space, sequentially learn/update multiple desired targets through a weighting system, and adaptively search in multiple material properties functional space for non-dominated pareto discoveries to maximize the custom structural similarity based acquisition function. We term this a multi-objective Bayesian optimized human assessed multi-target generated spectral recommender systems (MOBO-HAM-SRS). The approach has been demonstrated to peizoresponse force spectroscopy of a ferroelectric thin film, exploring with different kernels and acquisition functions. This work shows an advancement towards human-AI collaborated automated experiments, steering optimization trajectories through human overpowering AI at the early stage when uncertainty is high and AI overpowering human at the later stage with rapid exploration towards optimal goal, following human-assessed multiple targets properties.

Biswas, Arpan↗

DOE OSTI2021

Sensitivity Analysis of Tunable Equation of State Material Model In Pulsed Mercury Target Simulation

A pulsed neutron spallation target is subjected to very short but intense loads from repeated proton pulses. Approximately 60% of the energy from each proton pulse is deposited into the mercury target material and the stainless-steel target structure, leading to a high-pressure region in both the stationary target structure and the flowing mercury. The high-pressure region propagates and leads to fluid-structure interaction. The resultant loading on the target structure containing liquid mercury is difficult to predict, although various simulation approaches and material models for the mercury have been tried. To date, the best match of simulation to experimental data is obtained by using an equation of state (EOS) material model with a specified tensile cutoff pressure, which simulates the cavitation threshold. The inclusion of a threshold to represent cavitation is key to the successful predictions of stress waves triggered by the high-energy pulse striking the mercury and vessel. However, recent measurements of target structure strain show that significant discrepancies remain between the measured and simulated strain values in the EOS mercury model. These differences grow when noncondensable helium gas is intentionally injected into the flowing mercury to reduce the loading on the structure. An EOS-based proportional–integral–derivative (PID) mercury model has been proposed to reduce the gap between the measured and simulated vessel strain responses for targets with gas injection. The conceptual and numerical description and initial investigation of the PID model are presented in previous work. Further studies of this PID model — including the sensitivity of the structure’s strain response to model parameters (the tensile cutoff, PID parameters Kp, Ki, and Kd) — are reported in this article. Results show the strain response is more sensitive to changes in the tensile cutoff value than to changes in the model parameters Kp, Ki, and Kd. These results will aid in future work where the model parameters will be optimized to match simulation data to strain measurements.

Lin, Lianshan↗

DOE OSTI2021

Quantification of Cas9 binding and cleavage across diverse guide sequences maps landscapes of target engagement

The RNA-guided nuclease Cas9 has unlocked powerful methods for perturbing both the genome through targeted DNA cleavage and the regulome through targeted DNA binding, but limited biochemical data have hampered efforts to quantitatively model sequence perturbation of target binding and cleavage across diverse guide sequences. We present scalable, sequencing-based platforms for high-throughput filter binding and cleavage and then perform 62,444 quantitative binding and cleavage assays on 35,047 on- and off-target DNA sequences across 90 Cas9 ribonucleoproteins (RNPs) loaded with distinct guide RNAs. We observe that binding and cleavage efficacy, as well as specificity, vary substantially across RNPs; canonically studied guides often have atypically high specificity; sequence context surrounding the target modulates Cas9 on-rate; and Cas9 RNPs may sequester targets in nonproductive states that contribute to “proofreading” capability. Lastly, we distill our findings into an interpretable biophysical model that predicts changes in binding and cleavage for diverse target sequence perturbations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2024

Flux REaction TArget Prioritization (Flux RETAP) v1

Metabolic engineering is evolving rapidly as a result of new advances in synthetic biology and automation, as well as the irruption of machine learning (ML). ML has been shown to provide the predictive power synthetic biology lacked and needed, and to be able to effectively guide the metabolic engineering process. However, current technical limitations prevent the independent application of ML approaches to metabolic engineering without the use of previous biological knowledge in the form of a prioritized list of desirable engineering targets. Here, we present FluxRETAP, a simple and computationally inexpensive method that leverages the prior mechanistic knowledge embedded in genome-scale metabolic models (GSMs) for suggesting targets for genetic overexpression, downregulation or deletion, with the final goal of increasing metabolite production. FluxRETAP captured 100% of reaction targets experimentally verified to improve Escherichia coli isoprenol production in the literature accessible to us, 50% of targets that experimentally improved taxadiene production in E. coli and ~60% of genetic targets from a verified minimal constrained cut-set in Pseudomonas putida while providing additional high priority targets that could be tested. Overall, FluxRETAP is an efficient algorithm for identifying a prioritized list of testable genetic and reaction targets which can also be utilized in ML pipelines.

Czajka, Jeffrey [Battelle Memorial Institute, Paci↗

DOE OSTI2021

Physics Studies for the LBNF Graphite Target Design

We present the simulated physics performance of the Long-Baseline Neutrino Facility (LBNF) graphite target that is being designed by the RAL High Power Targets Group for the Deep Underground Neutrino Experiment (DUNE). We first compare three conceptual cylindrical target design options as a function of target length (up to 2.2 m): downstream supported, two individual targets and an upstream-supported cantilever. Choosing the cantilever design as the baseline, we show the effect of widening the upstream inner conductor of the first focusing horn to provide extra space for supporting the target. We also give estimates of the expected performance of the 1.5 m prototype and 1.8 m production cantilevered targets. Furthermore, we show the effects of the main engineering updates made to the other two focusing horns since the DUNE TDR.

43 PARTICLE ACCELERATORS↗

DOE OSTI2025

Radioisotope production at the Spallation Neutron Source: Design concept of isotope production target

Upon completion of the Second Target Station (STS) Project in the mid 2030s, the Spallation Neutron Source accelerator at Oak Ridge National Laboratory will deliver a 2.7 MW proton beam to the neutron production targets. In the post-STS phase, the accelerator will have a reserve beam power capacity of at least 100 kW beyond what the two neutron production targets will receive, which could potentially be ramped up to 300 kW. In this paper, a design concept for a radioisotope production target that could utilize 250 kW of the reserve beam power capacity is presented. The target consists of thorium discs encapsulated in 316L austenitic steel shells that are cooled by water. The estimated post-irradiation activity of Ac-225 and Ra-225, critical medical radioisotopes used in targeted alpha therapy cancer treatment, is calculated at the end of bombardment after a 14 day long irradiation time. Thermal and structural analyses are performed on the basis of calculated nuclear heating data. The technical feasibility of a high-power target under a 250-kW beam load with an extremely low duty factor of $3.5\cdot 10^{-6}$ is presented from thermal, structural and fatigue lifetime perspectives.

Lee, Yong Joong [ORNL] (ORCID:0000000298381723)↗

DOE OSTI2021

A targeted opsonization platform for programming innate immunity against rapidly evolving novel viruses.

Recent work has shown that artificial opsonins stimulate the targeted destruction of bacteria by phagocyte immune cells. Artificial opsonization has the potential to direct the innate immune system to target novel antigens, potentially even viral pathogens. Furthermore, the engagement of innate immunity presents a potential solution for the spread of pandemics in a scenario when a vaccine is unavailable or ineffective. Funded by the LDRD late start bioscience pandemic response program, we tested whether artificial opsonins can be developed to target viral pathogens using phage MS2 and a SARS-CoV-2 surrogate. To direct opsonization against these viruses we purified antibody derived viral targeting motifs and attempted the same chemical conjugation strategies that produced bacterial targeting artificial opsonins. However, the viral targeting motifs proved challenging to conjugate using these methods, frequently resulting in precipitation and loss of product. Future studies may be successful with this approach if a smaller and more soluble viral-targeting peptide could be used.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2022

NorthStar Facility Target Fab and Flow Testing - FY 21

The facility target fabrication and flow testing activity will consist of flow tests using the blower system at LANL to test the disk holder and target, both redesigned by the NorthStar prime contractor. The housing and transition system delivering helium cooling to the disc holder and target will be fabricated and tested at LANL facilities. The tests will include pressure drop versus flow measurements through the target and housing, optical flow diagnostics and fiber optic imaging of the disc stack. The pressure drop measurements will be compared to CFD simulations to verify the latter, the optical flow diagnostics will be used to determine whether modifications made to the housing and target holder allow sufficient flow through the bottom of the housing to adequately cool it and the fiber optics will be used to image the discs during operation as a proof of concept of the diagnostic, to be used at NorthStar facilities during preproduction testing. The work is a Partial Fulfillment of the Deliverable Requirement for NorthStar Facility Target Fab and Flow Testing and Production Target Testing Support by LANL

42 ENGINEERING↗

DOE OSTI2022

Uncertainty Quantification of Monolithic Tungsten Target Block Fatigue

The current STS spallation target design consists of 21 water cooled, tantalum clad, monolithic tungsten blocks. The target wheel assembly rotates such that each target block receives a direct proton pulse every 1.4 seconds (21 blocks / 15 Hz pulses). The quasi-steady heating induced by the repetitive beam pulses creates a significant mean stress distribution in the target. On top of this, the rapid energy deposition from a proton pulse induces dynamic stress waves that are of the same order of magnitude as the mean stresses. Over the design goal of 5,000 operational hours per year for a decade, each target must withstand over 130 million repetitions of these dynamic stress events. The fatigue life prediction of the target blocks is a complex sequence of simulations that depend upon a set of input parameters. For the tungsten block, the end goal is the fatigue factor-of-safety (FOS). This study documents a new structural analysis routine using software available to U.S. national laboratories (e.g. CUBIT, Sierra Multiphysics, Dakota) that enables more rapid target fatigue analysis. The increased throughput is amenable to parameter sensitivity and uncertainty quantification (UQ) studies. A set of input parameters (ultimate strength, fatigue strength, density, elastic modulus, Poisson’s ratio, thermal conductivity, coefficient of thermal expansion, specific heat, flow rate) with expected ranges are documented based on literature data, recent experimental testing, and engineering judgement. UQ bounds the resulting fatigue FOS at [0.5, 3.4] using epistemic interval analysis. These bounds are expected to be wider due to model effects (discretization) and beam effects (focus, offset) that were not included. Parameter sensitivity underscores the importance of ultimate strength and fatigue strength of irradiated tungsten on the fatigue calculations.

43 PARTICLE ACCELERATORS↗

DOE OSTI2024

High-Power Targetry R&D for Next-Generation Accelerator Target Facilities

Beam-intercepting devices such as beam windows and particle-production targets are critical components of accelerator target facilities for High Energy Physics (HEP) experiments. The high-power, pulsed structure of the particle beams used for these experiments leads to thermal shock and high-cycle fatigue in addition to radiation damage resulting from the accumulated particle fluence. This can lead to degradation of the target system s mechanical and thermal properties; considerably reducing their lifetimes and presenting substantial challenges to reliable operation of multi-MW class facilities. Recently several major accelerator facilities have been forced to operate at reduced power levels due to target survivability concerns. Furthermore, at Fermilab it is planned to increase the neutrino production beam power up to 2.4 MW in coming years. Therefore, timely R&D on the irradiated behavior of target system materials is critical to efficient operation of accelerator facilities and full utilization of recent accelerator power upgrades for HEP research. This talk will begin with an overview of high-power targetry, and the significant challenges presented by beam power increases expected for future HEP experiments. We will then cover several past materials irradiation studies that have been completed by the High-Power Targetry R&D group at Fermilab and its collaborators on common accelerator and target materials such as graphite, beryllium, titanium, and tungsten. Finally, we will conclude with a discussion of two novel materials investigations under way within the group; high-entropy alloys for beam window applications, and electrospun nanofibers to serve as particle production targets.

43 PARTICLE ACCELERATORS↗

DOE OSTI2024

Enabling groundbreaking experiments that advance our understanding of the universe through accurate target specifications

The Target Fabrication (TFAB) team at the National Ignition Facility (NIF) is tasked with assembling and qualifying targets for physics experiments. These targets are critical components used in experiments that advance research in areas such as fusion energy, high-energy-density physics, and astrophysics. Target Fabrication Engineers (TFEs) are responsible for producing and validating target specifications, which are compiled into detailed specification packages. TFAB produces hundreds of targets annually, with each target requiring several specification datasheets that culminate in a comprehensive specification package. TFAB needs an efficient and accurate means to generate these specification datasheets to maintain the rigorous NIF shot schedule.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2026

Automated tape-target centering based on template matching for construction measurement tasks using robotic total station

Robotic total stations have transformed surveying and construction mapping through precise, efficient, and automated measurements. These instruments integrate a theodolite, which measures horizontal and vertical angles, with an electronic distance measurement (EDM) unit to determine distances, allowing accurate 3D measurement of observable points. Traditionally, users manually aimed the total station at a target. Recent advancements in robotic motor control and integration of cameras now enable automatic rotation and aiming, typically requiring only a single operator to position the target. Automated aiming is commonly performed using retroreflector prisms, which reflect light back to the source with minimal scattering, enabling high-precision measurements over long distances. However, retroreflectors, especially those designed for 360 degree, can be expensive and impractical for certain applications. This paper presents an algorithm for automating the center detection of low-cost disposable tape targets using the total station's onboard camera and a template matching algorithm. The algorithm identifies the target's center pixel in the image, and the instrument is commanded to aim at that location. We evaluated the performance of this template-matching-based centering method under various distances, angles, lighting conditions, and field environments, comparing its results to both manual aiming and conventional automated aiming of tape targets. Manual aiming was used as the baseline operational reference in the absence of an independent ground-truth measurement. The proposed approach achieves target centering results comparable to the manual baseline. This method provides a cost-effective alternative for high-precision applications where retroreflector targets are constrained by budget or logistics.

Harrington, Joshua [ORNL]↗

DOE OSTI2025

Beam Commissioning Result of Polarized Target at SpinQuest

SpinQuest is a fixed-target experiment at Fermilab to measure the Drell-Yan process using transversely polarized NH$_3$ and ND$_3$ targets and unpolarized 120-GeV proton beam. In the Drell-Yan process, a quark in one scattering hadron and an anti-quark in the other hadron annihilate into a virtual photon and then decay into a muon (lepton) pair. The angular distribution of final-state muon pairs with respect to the target polarization is sensitive to the Sivers function of light antiquarks in the nucleon, which is one of the eight Transverse Momentum Dependent (TMD) parton distribution functions. The intensity of the proton beam is as high as $10^{12}$ protons/second, in order to accumulate the required statistics of Drell-Yan events. The polarized target system at SpinQuest has been carefully designed to accommodate such a high beam intensity. It is equipped with an evaporation refrigerator with a cooling power of around 5 W at 1 K. The target temperature is maintained at 1 K even under heat load caused by the proton beam and the DNP microwave. The target system and the spectrometer were commissioned with the proton beam from May through July 2024. The experimental setup of SpinQuest and the performance of the target system during the beam commissioning is reported.

Nakano, Kenichi [Virginia U.]↗

DOE OSTI2024

A goldilocks computational protocol for inhibitor discovery targeting DNA damage responses including replication-repair functions

While many researchers can design knockdown and knockout methodologies to remove a gene product, this is mainly untrue for new chemical inhibitor designs that empower multifunctional DNA Damage Response (DDR) networks. Here, we present a robust Goldilocks (GL) computational discovery protocol to efficiently innovate inhibitor tools and preclinical drug candidates for cellular and structural biologists without requiring extensive virtual screen (VS) and chemical synthesis expertise. By computationally targeting DDR replication and repair proteins, we exemplify the identification of DDR target sites and compounds to probe cancer biology. Our GL pipeline integrates experimental and predicted structures to efficiently discover leads, allowing early-structure and early-testing (ESET) experiments by many laboratories. By employing an efficient VS protocol to examine protein-protein interfaces (PPIs) and allosteric interactions, we identify ligand binding sites beyond active sites, leveraging in silico advances for molecular docking and modeling to screen PPIs and multiple targets. A diverse 3,174 compound ESET library combines Diamond Light Source DSI-poised, Protein Data Bank fragments, and FDA-approved drugs to span relevant chemotypes and facilitate downstream hit evaluation efficiency for academic laboratories. Two VS per library and multiple ranked ligand binding poses enable target testing for several DDR targets. This GL library and protocol can thus strategically probe multiple DDR network targets and identify readily available compounds for early structural and activity testing to overcome bottlenecks that can limit timely breakthrough drug discoveries. By testing accessible compounds to dissect multi-functional DDRs and suggesting inhibitor mechanisms from initial docking, the GL approach may enable more groups to help accelerate discovery, suggest new sites and compounds for challenging targets including emerging biothreats and advance cancer biology for future precision medicine clinical trials.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Bubble Generation in the SNS 2 MW Mercury Target

The accelerator at the Spallation Neutron Source is currently being upgraded to increase the proton beam power from 1.4 MW to 2.8 MW. About 2 MW will go to the first target station, while the rest will go to the future second target station. The first target station uses a mercury target. When the short proton beam pulse hits it, strong pressure waves are developed inside the mercury and the vessel itself, causing weld failures and cavitation erosion. The pressure wave can be significantly mitigated by injecting small helium bubbles into the mercury. SNS has been injecting helium since 2017 using small orifices but has met challenges in fabrication and operations with them. Thus, for the 2 MW target, swirl bubblers will be used to increase gas injection and improve reliability. A 2 MW prototypical target was built and tested in a mercury process loop available at Oak Ridge National Laboratory. Acrylic viewports on the top of the target were used to determine the bubble size distribution (BSD) generated by the swirl bubblers. It was found that the bubblers were not only capable of generating small bubbles but that the BSD was independent of gas injection rate.

Barbier, Charlotte↗

DOE OSTI2023

Pion-Production Target for Mu2e-II: Design and Prototype

The higher beam intensity available for Mu2e-II will require a substantially different target design. This paper discusses our recent advances in conceptual R&D for a Mu2e-II target station. The design is based on energy deposition and radiation damage simulations as well as thermal and mechanical analyses to estimate the survivability of the system. We considered rotated targets, fixed granular targets and a novel conveyor target with tungsten or carbon spherical elements that are circulated through the beam path. The motion of the spheres can be generated either mechanically or both mechanically and by a He-gas flow. The simulations identified the conveyor target as the preferred approach, and that approach has been developed into a prototype. We describe this first prototype for the Mu2e-II target and report on its mechanical tests performed at Fermilab that indicate the feasibility of the design, discuss its challenges as well as suggest directions for further improvement.

Neuffer, David↗

DOE OSTI2023

Improvements in Reflected Target Non-intrusive Assessment (ReTNA)

Accurate optical surfaces are a primary driver of concentrated solar power plant performance. Errors in pointing and tracking mirrors, the canting of individual mirror facets, and the surface slope of the mirror itself can be caused by errors during assembly, transportation, wind loading, gravity, and many other sources. The tools that exist to measure these error sources today largely rely on fringe deflectometry (SOFAST, QDec, others), or photogrammetry with targets attached to the mirror surface. In 2022, NREL presented a new indoor optical measurement system to measure fully assembled heliostats during development and on the assembly line for quality assurance purposes, which has undergone significant development in the last year, including the installation of a new, larger laboratory setup. This system, called ReTNA (Reflected Target Non-intrusive Assessment), uses a printed pattern as a deflectometry target. Using printed pattern features as deflectometry targets instead of fringes allows the software to measure the surface slope in two dimensions, eliminating the need to for changing, projected targets. In the last year, NREL's ReTNA tool has been adapted to use a tall, thin target, that only spans one dimension of the mirror, and a camera moving on an automatic track system. We will present these new developments, including the new setup, target patterns, software methodology for fast, automatic optical analysis, and important lessons learned throughout the process. ReTNA results will be compared to established tools, to establish the uncertainty of this new method. ReTNA leverages recent improvements in computer vision and photogrammetry to remove as much careful calibration from the setup process as possible, making the tool low cost, simple, and portable. While it will not achieve the resolution of a fringe deflectometry system, its advantages make it well suited for CSP evaluation, and allow it to fill a different industry need.

concentrating solar power↗