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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 163 records · Page 9

Template-independent enzymatic synthesis of RNA oligonucleotides

Abstract RNA oligonucleotides have emerged as a powerful therapeutic modality to treat disease, yet current manufacturing methods may not be able to deliver on anticipated future demand. Here, we report the development and optimization of an aqueous-based, template-independent enzymatic RNA oligonucleotide synthesis platform as an alternative to traditional chemical methods. The enzymatic synthesis of RNA oligonucleotides is made possible by controlled incorporation of reversible terminator nucleotides with a common 3′-O-allyl ether blocking group using new CID1 poly(U) polymerase mutant variants. We achieved an average coupling efficiency of 95% and demonstrated ten full cycles of liquid phase synthesis to produce natural and therapeutically relevant modified sequences. We then qualitatively assessed the platform on a solid phase, performing enzymatic synthesis of severalN + 5 oligonucleotides on a controlled-pore glass support. Adoption of an aqueous-based process will offer key advantages including the reduction of solvent use and sustainable therapeutic oligonucleotide manufacturing.

Biotechnology & Applied Microbiology↗

Surfactant templated biogenic nanoporous silica thermal insulation composite

Carbon-sequestration biogenic insulation materials offer a promising solution for sustainable and energy-efficient buildings. However, minimizing energy-intensive manufacturing processes and ensuring a uniform microstructure are essential to achieve widespread application. In this work, we introduce cetyltrimethylammonium bromide (CTAB) surfactant as both synthesis and dispersion template for nanoporous silica to create biogenic straw-based thermal insulation composites. As the amount of nanoporous silica increases to 72 wt%, the elastic insulation composite dried using the solvent exchange method exhibits a density of 0.058 g cm –3 , a thermal conductivity of 30.3 mW m –1 K –1 and a flexural modulus of 3.96 MPa, while demonstrating materials circularity and fire retardance. The use of CTAB surfactant effectively captures nanoporous silica, preventing its loss during manufacturing and enhancing the homogeneity and dispersion of the silica within the composite. In addition, the results show that the ethanol solvent exchange drying at ambient conditions provides the optimum thermal insulation performance with less energy consumption compared to freeze-drying.

36 MATERIALS SCIENCE↗

Genetic control of morphological transitions in a coacervating protein template

Nature routinely exploits liquid–liquid phase separation (LLPS) of proteins to control the assembly and mineralization of hybrid materials. Here, we show that fusion of the Car9 silica-binding peptide to an elastin-like polypeptide (ELP) yields temperature- and sequence-programmable soft matter templates for the synthesis of silicified architectures ranging in size from nanometers to micrometers. Specifically, we demonstrate unprecedented control over the diameter of silica nanoparticles (SiNP) in the 30–60 nm range with 4 nm precision, show that a single arginine residue (R4) in the Car9 sequence underpins the transition from micelles to proteinosomes, and find that substitutions in other basic residues modulate electrostatic repulsion and solvation to enable access to kinetically trapped species. These structures, which include interconnected micelles, small (∼200 nm) and large (>5 µm) vesicles, are readily visualized by SEM imaging following silicification. Molecular dynamics (MD) simulations and AlphaFold predictions reveal that mutations in positively charged residues alter interfacial packing, hydration, and conformational freedom of the silica-binding segments. Overall, our results establish sequence and thermal energy as synergistic levers for morphological control across length scales using solid-binding ELPs and establish mineralization as a powerful tool to visualize the structure of dynamic soft matter assemblies.

hierarchy↗

Co-templating of polyoxoniobates and silicate/germanate trimer-rings in crystals and inorganic gels

Polyoxometalate (POM) supramolecular gels are a growing family of materials, both for understanding fundamental self-assembly and fabricating flexible monolithic materials that retain the function of metal oxides. Here, we exploited the pH-dependent speciation of polyoxoniobates (PONbs), targeting the formation of PONb-containing supramolecular gels that contain other low molecular weight components (silicate, germanate, phosphate, and carbonate). The introduction of gaseous CO 2 into aqueous hexaniobate solutions resulted in the formation of both new crystalline phases and highly transparent gels. The crystalline phases, formulated Cs 24 [Nb 7 O 22 (NbO(CO 3 ) 2 ) 9 (Si 3 O 9 )]·19.6H 2 O and Cs 21 Na 3 [Nb 7 O 22 (NbO(CO 3 ) 2 ) 9 (Ge 3 O 9 )]·33.6H 2 O are templated by a rare planar [X 3 O 9 ] 6− (X = Si, Ge) ring. Crystalline phases were not obtained with phosphate; instead, the gels contain a mixture of phosphate-centred PONbs and network-forming phosphate. POM speciation within the gels, physical properties, and assembly mechanisms were benchmarked by solution and solid-state nuclear magnetic resonance (NMR) spectroscopy, vibrational spectroscopies, small-angle X-ray scattering (SAXS), and thermogravimetry-mass spectroscopy. Optical analysis and dielectric behavior of the gels confirmed that they are highly transparent ionic and electronic conductors. The alkali and hydroxide concentration controls the formation of crystalline materials or supramolecular gels while maintaining the same network building blocks, providing a rare opportunity to describe the molecular-level structure of inorganic amorphous materials.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Chemical templates of the Central Molecular Zone

Context . The Central Molecular Zone (CMZ) of the Milky Way exhibits extreme conditions, including high gas densities, elevated temperatures, enhanced cosmic-ray ionization rates, and large-scale dynamics. This makes it a perfect laboratory for astrochemical studies. With large-scale molecular surveys revealing increasing chemical and physical complexity in the CMZ, it is essential to develop robust methods to decode the chemical information embedded in this extreme region. Aims . A key step to interpreting the molecular richness found in the CMZ is building chemical templates tailored to its diverse conditions. In particular, understanding how CMZ environments affect shock and protostellar chemistry is crucial. The combined impact of high ionization, elevated temperatures, and dense gas remains insufficiently explored for observable tracers. Methods . For this study, we utilized UCLCHEM , a gas-grain time-dependent chemical model, to link physical conditions with their corresponding molecular signatures and identify key tracers of temperature, density, ionization, and shock activity. To achieve this, we ran a grid of models of shocks and protostellar objects representative of typical CMZ conditions, focusing on 24 species, including complex organic molecules. Results . Shocked and protostellar environments show distinct evolutionary timescales (≲10 4 vs. ≳10 4 years); 300 K emerges as a key temperature threshold for chemical differentiation. We find that cosmic-ray ionization and temperature are the main drivers of chemical trends. HCO + , H 2 CO, and CH 3 SH trace ionization, while HCO, HCO + , CH 3 SH, CH 3 NCO, and HCOOCH 3 show consistent abundance contrasts between shocks and protostellar regions over similar temperature ranges. Conclusions . We characterized the behavior of 24 species in protostellar and shock-related environments. While our models underpredict some complex organics in shocks, they reproduce observed trends for most species, supporting scenarios involving a need for recurring shocks in Galactic Center clouds and enhanced ionization toward Sgr B2(N2). Future work should assess the role of shock recurrence and metallicity in shaping chemistry.

Galaxy: center↗

Templates of expected measurement uncertainties for neutron-induced capture and charged-particle production cross section observables

This paper provides a template of expected uncertainties and correlations for measurements of neutron-induced capture and charged-particle production cross sections. Measurements performed in-beam include total absorption spectroscopy, total energy detection, γ -ray spectroscopy, and direct charged-particle detection. Offline measurements include activation analysis and accelerator mass spectrometry. The information needed for proper use of the datasets in resonance region and high energy region evaluations is described, and recommended uncertainties are provided when specific values are not available for a dataset.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Templates of expected measurement uncertainties for (n, xn) cross sections

A template is provided for evaluating experimental uncertainties for neutron elastic and inelastic scattering cross sections and γ -ray production cross sections from (n, xn) measurements at laboratories with monoenergetic or white neutron sources. A typical range of uncertainties is presented for experiments detecting the scattered neutrons or the resulting de-excitation γ rays based on a survey of available data and input from many experimentalists and theorists with extensive knowledge in the field. Models commonly used to evaluate the resulting cross-sections are also discussed. Suggestions are made regarding what experimental and uncertainty information is needed for data evaluations and should be included when reporting experimental (n, xn) cross sections. Uncertainty values and correlations are recommended if these values cannot be estimated for past data from the literature.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

A comparison of template vs. direct model fitting for redshift-space distortions in BOSS

The growth of large-scale structure, as revealed in the anisotropic of clustering of galaxies in the low redshift Universe at z < 2, provides a stringent test of our cosmological model. The strongest current constraints come from the BOSS and eBOSS surveys, with uncertainties on σ 8 , the amplitude of clustering on an 8 h –1 Mpc scale, of less than 10 per cent. A number of different approaches have been taken to fitting this signal, leading to discrepancies of up to 1σ in the measurements of the amplitude of fluctuations at late times. We compare in some detail two of the leading approaches, one based on fitting a template cosmology whose amplitude and length scales are allowed to float with one based on varying the underlying parameters of a cosmological model directly, when fitting to the BOSS DR12 data. Holding the input data, scale cuts, window functions and modeling framework fixed we are able to isolate the cause of the differences and discuss the implications for future surveys.

redshift surveys↗

Detectability of subsolar mass neutron stars through a template bank search

Here, we study the detectability of gravitational-wave signals from subsolar-mass binary neutron star systems by the current generation of ground-based gravitational-wave detectors. We find that finite size effects from large tidal deformabilities of the neutron stars and lower merger frequencies can significantly impact the sensitivity of the detectors to these sources. By simulating a matched-filter based search using injected binary neutron star signals with tidal deformabilities derived from physically motivated equations of state, we calculate the reduction in sensitivity of the detectors. We conclude that the loss in sensitive volume can be as high as 78.4% for an equal mass binary system of chirp mass 0.17M ⊙ , in a search conducted using binary black hole template banks. We use this loss in sensitive volume, in combination with the results from the search for subsolar-mass binaries conducted on data collected by the LIGO-Virgo observatories during their first three observing runs, to obtain a conservative upper limit on the merger rate of subsolar-mass binary neutron stars. Since the discovery of a low-mass neutron star would provide new insight into formation mechanisms of neutron stars and further constrain the equation of state of dense nuclear matter, our result merits a dedicated search for subsolar-mass binary neutron star signals.

79 ASTRONOMY AND ASTROPHYSICS↗

Characterizing the expected behavior of non-Poissonian template fitting

We have performed a systematic study of the statistical behavior of non-Poissonian template fitting (NPTF), a method designed to analyze and characterize unresolved point sources in general counts datasets. Here, in this paper, we focus on the properties and characteristics of the Fermi-LAT gamma-ray data set. In particular, we have simulated and analyzed gamma-ray sky maps under varying conditions of exposure, angular resolution, pixel size, energy window, event selection, and source brightness. We describe how these conditions affect the sensitivity of NPTF to the presence of point sources, for inner-galaxy studies of point sources within the Galactic Center excess, and for the simplified case of isotropic emission. We do not find opportunities for major gains in sensitivity from varying these choices, within the range available with current Fermi-LAT data. We provide an analytic estimate of the NPTF sensitivity to point sources for the case of isotropic emission and perfect angular resolution, and find good agreement with our numerical results for that case.

79 ASTRONOMY AND ASTROPHYSICS↗

Measurement of simplified template cross sections of the Higgs boson produced in association with W or Z bosons in the H → b b ¯ decay channel in proton-proton collisions at s = 13 TeV

Differential cross sections are measured for the standard model Higgs boson produced in association with vector bosons (W, Z) and decaying to a pair of b quarks. Measurements are performed within the framework of the simplified template cross sections. The analysis relies on the leptonic decays of the W and Z bosons, resulting in final states with 0, 1, or 2 electrons or muons. The Higgs boson candidates are either reconstructed from pairs of resolved b-tagged jets, or from single large-radius jets containing the particles arising from two b quarks. Proton-proton collision data at $\sqrt{s}$ =13 TeV, collected by the CMS experiment in 2016–2018 and corresponding to a total integrated luminosity of 138 fb -1 , are analyzed. The inclusive signal strength, defined as the product of the observed production cross section and branching fraction relative to the standard model expectation, combining all analysis categories, is found to be μ = $1.15^{+0.22}_{-0.20}$. This corresponds to an observed (expected) significance of 6.3 (5.6) standard deviations.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Three-dimensional nanoscale metal, metal oxide, and semiconductor frameworks through DNA-programmable assembly and templating

Controlling the three-dimensional (3D) nanoarchitecture of inorganic materials is imperative for enabling their novel mechanical, optical, and electronic properties. Here, by exploiting DNA-programmable assembly, we establish a general approach for realizing designed 3D ordered inorganic frameworks. Through inorganic templating of DNA frameworks by liquid- and vapor-phase infiltrations, we demonstrate successful nanofabrication of diverse classes of inorganic frameworks from metal, metal oxide and semiconductor materials, as well as their combinations, including zinc, aluminum, copper, molybdenum, tungsten, indium, tin, and platinum, and composites such as aluminum-doped zinc oxide, indium tin oxide, and platinum/aluminum-doped zinc oxide. The open 3D frameworks have features on the order of nanometers with architecture prescribed by the DNA frames and self-assembled lattice. Structural and spectroscopic studies reveal the composition and organization of diverse inorganic frameworks, as well as the optoelectronic properties of selected materials. The work paves the road toward establishing a 3D nanoscale lithography.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Vernier template synthesis of molecular knots

Molecular knots are often prepared using metal helicates to cross the strands. Here we found that coordinatively mismatching oligodentate ligands and metal ions provides a more effective way to synthesize larger knots using Vernier templating. Strands composed of different numbers of tridentate 2,6-pyridinedicarboxamide groups fold around nine-coordinate lanthanide (III) ions to generate strand-entangled complexes with the lowest common multiple of coordination sites for the ligand strands and metal ions. Ring-closing olefin metathesis then completes the knots. A 3:2 (ditopic strand:metal) Vernier assembly produces +3 1 #+3 1 and –3 1 #–3 1 granny knots. Vernier complexes of 3:4 (tetratopic strand:metal) stoichiometry selectively form a 378-atom-long trefoil-of-trefoils triskelion knot with 12 alternating strand crossings or, by using opposing stereochemistry at the terminus of the strand, an inverted-core triskelion knot with six alternating and six nonalternating strand crossings.

74 ATOMIC AND MOLECULAR PHYSICS↗

Implementation and (Inverse Modified) Error Analysis for Implicitly Templated ODE-Nets

We focus on learning unknown dynamics from data using ODE-nets templated on implicit numerical initial value problem solvers. First, we perform inverse modified error analysis of the ODE-nets using unrolled implicit schemes for ease of interpretation. It is shown that training an ODE-net using an unrolled implicit scheme returns a close approximation of an inverse modified differential equation (IMDE). In addition, we establish a theoretical basis for hyperparameter selection when training such ODE-nets, whereas current strategies usually treat numerical integration of ODE-nets as a black box. We thus formulate an adaptive algorithm which monitors the level of error and adapts the number of (unrolled) implicit solution iterations during the training process, so that the error of the unrolled approximation is less than the current learning loss. This helps accelerate training while maintaining accuracy. Several numerical experiments are performed to demonstrate the advantages of the proposed algorithm compared to nonadaptive unrollings and validate the theoretical analysis. Here, we also note that this approach naturally allows for incorporating partially known physical terms in the equations, giving rise to what is termed “gray box” identification.

ODE-nets↗

up_template

The GitHub repository for NETL's unit process template and LCA report generator.

LCA↗