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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 163 records · Page 9

Computational Study on Full-length Human Ku70 with Double Stranded DNA: Dynamics, Interactions and Functional Implications

The Ku70/80 heterodimer is the first repair protein in the initial binding of double-strand break (DSB) ends following DNA damage, and is a component of nonhomologous end joining repair, the primary pathway for DSB repair in mammalian cells. In this study we constructed a full-length human Ku70 structure based on its crystal structure, and performed 20 ns conventional molecular dynamic (CMD) simulations on this protein and several other complexes with short DNA duplexes of different sequences. The trajectories of these simulations indicated that, without the topological support of Ku80, the residues in the bridge and C-terminal arm of Ku70 are more flexible than other experimentally identified domains. We studied the two missing loops in the crystal structure and predicted that they are also very flexible. Simulations revealed that they make an important contribution to the Ku70 interaction with DNA. Dislocation of the previously studied SAP domain was observed in several systems, implying its role in DNA binding. Targeted molecular dynamic (TMD) simulation was also performed for one system with a far-away 14bp DNA duplex. The TMD trajectory and energetic analysis disclosed detailed interactions of the DNA-binding residues during the DNA dislocation, and revealed a possible conformational transition for a DSB end when encountering Ku70 in solution. Compared to experimentally based analysis, this study identified more detailed interactions between DNA and Ku70. Free energy analysis indicated Ku70 alone is able to bind DNA with relatively high affinity, with consistent contributions from various domains of Ku70 in different systems. The functional implications of these domains in the processes of Ku heterodimerization and DNA damage recognition and repair can be characterized in detail based upon this analysis.

Hu, Shaowen↗

Graph Theory Roots of Spatial Operators for Kinematics and Dynamics

Spatial operators have been used to analyze the dynamics of robotic multibody systems and to develop novel computational dynamics algorithms. Mass matrix factorization, inversion, diagonalization, and linearization are among several new insights obtained using such operators. While initially developed for serial rigid body manipulators, the spatial operators and the related mathematical analysis have been shown to extend very broadly including to tree and closed topology systems, to systems with flexible joints, links, etc. This work uses concepts from graph theory to explore the mathematical foundations of spatial operators. The goal is to study and characterize the properties of the spatial operators at an abstract level so that they can be applied to a broader range of dynamics problems. The rich mathematical properties of the kinematics and dynamics of robotic multibody systems has been an area of strong research interest for several decades. These properties are important to understand the inherent physical behavior of systems, for stability and control analysis, for the development of computational algorithms, and for model development of faithful models. Recurring patterns in spatial operators leads one to ask the more abstract question about the properties and characteristics of spatial operators that make them so broadly applicable. The idea is to step back from the specific application systems, and understand more deeply the generic requirements and properties of spatial operators, so that the insights and techniques are readily available across different kinematics and dynamics problems. In this work, techniques from graph theory were used to explore the abstract basis for the spatial operators. The close relationship between the mathematical properties of adjacency matrices for graphs and those of spatial operators and their kernels were established. The connections hold across very basic requirements on the system topology, the nature of the component bodies, the indexing schemes, etc. The relationship of the underlying structure is intimately connected with efficient, recursive computational algorithms. The results provide the foundational groundwork for a much broader look at the key problems in kinematics and dynamics. The properties of general graphs and trees of nodes and edge were examined, as well as the properties of adjacency matrices that are used to describe graph connectivity. The nilpotency property of such matrices for directed trees was reviewed, and the adjacency matrices were generalized to the notion of block weighted adjacency matrices that support block matrix elements. This leads us to the development of the notion of Spatial Kernel Operator SKO kernels. These kernels provide the basis for the development of SKO resolvent operators.

Jain, Abhinandan↗

Hybrid-coordinate spacecraft dynamics using large-deformation modal coordinates

For a vehicle amenable to idealization as a set of n + 1 rigid bodies interconnected by n line hinges (implying tree topology), a set of minimum-dimension matrix equations of motion is recorded in terms of variables including the relative rotations of contiguous bodies. When a substructure or portion of the vehicle is subjected to large gross deformations but is restricted to 'small' strains or local deformations, the n-body model is (for sufficiently large n) assumed to experience 'small' relative rotations of contiguous bodies within the substructure, and the equations of motion are linearized in these variables. The application of coordinate transformations and truncations to the linearized subset of the system equations of motion then produces a hybrid-coordinate formulation of the problem involving both discrete and distributed coordinates.

Likins, P. W.↗

Propagation of solar flare-associated interplanetary shock waves in the heliospheric meridional plane

An analysis is conducted for 149 flare-associated shock wave events based on interplanetary scintillation observational data. All of the flare-associated shock waves tend to propagate toward the low latitude region near the solar equator for flares that are located in both the solar Northern and Southern Hemispheres. Also, the fastest propagation directions tend toward the heliospheric current sheet near 1 AU. This tendency is caused by the dynamic action of near-sun magnetic forces on the ejected coronal plasma that traverses the helmet-like magnetic topologies near the sun outward to the classical topology that is essentially parallel to the heliospheric current sheet.

Wei, Fengsi↗

Stability analysis of spacecraft power systems

The problems in applying standard electric utility models, analyses, and algorithms to the study of the stability of spacecraft power conditioning and distribution systems are discussed. Both single-phase and three-phase systems are considered. Of particular concern are the load and generator models that are used in terrestrial power system studies, as well as the standard assumptions of load and topological balance that lead to the use of the positive sequence network. The standard assumptions regarding relative speeds of subsystem dynamic responses that are made in the classical transient stability algorithm, which forms the backbone of utility-based studies, are examined. The applicability of these assumptions to a spacecraft power system stability study is discussed in detail. In addition to the classical indirect method, the applicability of Liapunov's direct methods to the stability determination of spacecraft power systems is discussed. It is pointed out that while the proposed method uses a solution process similar to the classical algorithm, the models used for the sources, loads, and networks are, in general, more accurate. Some preliminary results are given for a linear-graph, state-variable-based modeling approach to the study of the stability of space-based power distribution networks.

Halpin, S. M.↗

Parallel Multiscale Algorithms for Astrophysical Fluid Dynamics Simulations

Our goal is to develop software libraries and applications for astrophysical fluid dynamics simulations in multidimensions that will enable us to resolve the large spatial and temporal variations that inevitably arise due to gravity, fronts and microphysical phenomena. The software must run efficiently on parallel computers and be general enough to allow the incorporation of a wide variety of physics. Cosmological structure formation with realistic gas physics is the primary application driver in this work. Accurate simulations of e.g. galaxy formation require a spatial dynamic range (i.e., ratio of system scale to smallest resolved feature) of 104 or more in three dimensions in arbitrary topologies. We take this as our technical requirement. We have achieved, and in fact, surpassed these goals.

Norman, Michael L.↗

Mesh Network Architecture for Enabling Inter-Spacecraft Communication

To enable communication between spacecraft operating in a formation or small constellation, a mesh network architecture was developed and tested using a time division multiple access (TDMA) communication scheme. The network is designed to allow for the exchange of telemetry and other data between spacecraft to enable collaboration between small spacecraft. The system uses a peer-to-peer topology with no central router, so that it does not have a single point of failure. The mesh network is dynamically configurable to allow for addition and subtraction of new spacecraft into the communication network. Flight testing was performed using an unmanned aerial system (UAS) formation acting as a spacecraft analogue and providing a stressing environment to prove mesh network performance. The mesh network was primarily devised to provide low latency, high frequency communication but is flexible and can also be configured to provide higher bandwidth for applications desiring high data throughput. The network includes a relay functionality that extends the maximum range between spacecraft in the network by relaying data from node to node. The mesh network control is implemented completely in software making it hardware agnostic, thereby allowing it to function with a wide variety of existing radios and computing platforms..

Becker, Christopher↗

Wall-modeled LES of the Three-dimensional Speed Bump Experiment

We evaluate the performance of wall-modeled large eddy simulation (WMLES) in predicting smooth-body turbulent flow separation for a three-dimensional Gaussian-shaped speed bump geometry. The Reynolds number based on the bump length is 2 million, and an unstructured compressible finite-volume solver is used with an equilibrium wall model and dynamic subgrid scale model. Spanwise periodic simulations of the centerline two-dimensional bump were used to assess grid resolution requirements, and resolving the thin internal layer in the accelerating region was found to be necessary to correctly capture the downstream separated flow region. Based on these insights, an optimized grid that was smaller by a factor of two provided comparable accuracy to a finer grid that has been used by us and other researchers in past studies. Using insights gained from the spanwise periodic simulation, an unstructured polyhderal grid with about 250 million cells was used for the three-dimensional (3D) configuration with inviscid tunnel side and top walls. Detailed comparisons of wall skin-friction coefficient, wall pressure, velocity and turbulent stresses with available experimental data indicated excellent agreement. While the low-Reynolds Number Spalart-Allmaras RANS model with rotation/curvature correction gave qualitatively good agreement with experiments, WMLES showed significantly more accurate quantitative predictions of the flowfield. The 3D WMLES showed good agreement with experiments in the separated region, and the centerplane results indicated a different separation topology compared to the spanwise periodic simulation.

Computational Fluid Dynamics↗

Seamless Integration of Multibody and Orbital Dynamics to Support Human Spaceflight Simulations

At the NASA Johnson Space Center (JSC), modeling capability requirements are often driven by the need to simulate upcoming mission scenarios for analysis, procedures development, and training. In preparation for free-flyer vehicle capture, maneuvers, and release, it was determined that the multibody dynamics capabilities provided by MBDyn and the orbital dynamics capabilities supplied by JEOD needed to be merged to properly simulate the dynamic behaviors expected on-orbit. After initial attempts to combine the two packages proved cumbersome, it was decided that a more refined solution was required to facilitate the interface between these two packages. The resulting interface software package was named MBJEOD. The primary design goals for this new package were to leave MBDyn and JEOD untouched, to simplify and clarify simulation initialization for users, and to support any topology or on-orbit operational scenario that future missions might require. This paper provides a detailed overview of MBJEOD and the approach taken to seamlessly integrate the multibody dynamics of MBDyn with the orbital dynamics of JEOD. Additional attention is given to the numerical considerations required for MBJEOD and the simplifying assumptions leveraged to provide for real-time simulation needs. Verification and validation are addressed and current MBJEOD applications at the NASA JSC are discussed.

modeling↗

Seamless Integration of Multibody and Orbital Dynamics to Support Human Spaceflight Simulations

At the NASA Johnson Space Center (JSC), modeling capability requirements are often driven by the need to simulate upcoming mission scenarios for analysis, procedures development, and training. In preparation for free-flyer vehicle capture, maneuvers, and release, it was determined that the multibody dynamics capabilities provided by MBDyn and the orbital dynamics capabilities supplied by JEOD needed to be merged to properly simulate the dynamic behaviors expected on-orbit. After initial attempts to combine the two packages proved cumbersome, it was decided that a more refined solution was required to facilitate the interface between these two packages. The resulting interface software package was named MBJEOD. The primary design goals for this new package were to leave MBDyn and JEOD untouched, to simplify and clarify simulation initialization for users, and to support any topology or on-orbit operational scenario that future missions might require. This paper provides a detailed overview of MBJEOD and the approach taken to seamlessly integrate the multibody dynamics of MBDyn with the orbital dynamics of JEOD. Additional attention is given to the numerical considerations required for MBJEOD and the simplifying assumptions leveraged to provide for real-time simulation needs. Verification and validation are addressed and current MBJEOD applications at the NASA JSC are discussed.

modeling↗

Magnetic neutral sheets in evolving fields. I - General theory. II - Formation of the solar corona

The problem of the hydrostatic equilibrium of a large-scale magnetic field embedded in a fluid with infinite electrical conductivity is considered. It is pointed out that a necessary condition for static equilibrium is the invariance of the small-scale pattern in the field along the large-scale direction. A varying topological pattern implies that no fluid pressure distribution exists for which the field is everywhere static. Magnetic neutral sheets form, and dynamical reconnection of the field takes place. It is shown here that the invariance is also a sufficient condition for the existence of a fluid pressure distribution producing static equilibrium. Even in the simplest cases, however, the requirements on the fluid pressure are extreme and, a priori, are unlikely. It is concluded that almost all twisted flux tubes packed together produce dynamical nonequilibrium and dissipation of their twisting. This is the basic effect underlying the long-standing conjecture that the shuffling of the footpoints of the bipolar magnetic fields in the sun is responsible for heating the active corona. Attention is then given to the consequences of this general dynamical dissipation in the magnetic fields that produce the active corona of the sun. The footpoints of the field are continually manipulated by the subphotospheric convection in such a way that the lines of force are continually wrapped and rotated about one another.

Parker, E. N.↗

Nonlinear waves and solitons in molecular clouds

We begin a study of nonlinear wave phenomena in molecular clouds. These clouds exhibit highly nonlinear structure that is often described in terms of 'clumps' and 'filaments' which are bouncing around, twisting, and colliding within the cloud. These clouds are important because they ultimately produce the initial conditions for the star formation process. Our motivation is to explore the possibility that solitons (i.e., spatially localized, single-hump wave entities which often exhibit remarkable stability) can live in these molecular clouds and produce their observed structure. In this paper we focus on the case of one spatial dimension, and we show that a rich variety of nonlinear waves can exist in molecular cloud fluid systems (where self-gravity is included). We show that in the absence of magnetic fields no true soliton solutions are allowed, although highly nonlinear waves (whose crests become widely spaced and thus soliton-like) do exist. For clouds with embedded magnetic fields, we derive a model equation which describes the behavior of wave phenomena; this model equation allows solutions which correspond to nonlinear waves, solitons, and topological solitons. We briefly consider the stability of these wave entities and discuss the possible role they play in molecular cloud dynamics.

Adams, Fred C.↗

Microscale Processes Determining Macroscale Evolution of Magnetic Flux Tubes along Earth’s Magnetopause

An important process affecting solar wind-Earth’s magnetosphere coupling is non-steady dayside magnetic reconnection, observationally evidenced by a flux-transfer-event (FTE) that shows a bipolar variation of the magnetic field component normal to the magnetopause. FTEs often consist of two interlinked flux tubes, but, local kinetic processes between the flux tubes are not understood in the context of the FTE structuring, evolution, and impact. An FTE observed by MMS on 18 December 2017 consisted of two flux tubes of different topology. One includes field lines with ends connected to the northern and southern hemispheres while the other includes field lines with both ends connected to the magnetosheath. Reconnection occurring at the flux-tube interface indicates how interacting flux tubes evolve into a flux rope with helical magnetic topology that is either closed or open. This study demonstrates a new aspect of how micro-to meso-scale dynamics occurring within FTEs determines their macroscale characteristics and evolution.

Solar-terrestrial interactions↗

Flow field topology of transient mixing driven by buoyancy

Transient mixing driven by buoyancy occurs through the birth of a symmetric Rayleigh-Taylor morphology (RTM) structure for large length scales. Beyond its critical bifurcation the RTM structure exhibits self-similarity and occurs on smaller and smaller length scales. The dynamics of the RTM structure, its nonlinear growth and internal collision, show that its genesis occurs from an explosive bifurcation which leads to the overlap of resonance regions in phase space. This event shows the coexistence of regular and chaotic regions in phase space which is corroborated with the existence of horseshoe maps. A measure of local chaos given by the topological entropy indicates that as the system evolves there is growth of uncertainty. Breakdown of the dissipative RTM structure occurs during the transition from explosive to catastrophic bifurcation; this event gives rise to annihilation of the separatrices which drives overlap of resonance regions. The global bifurcation of explosive and catastrophic events in phase space for the large length scale of the RTM structure serves as a template for which mixing occurs on smaller and smaller length scales. Copyright 2004 American Institute of Physics.

Nonlinear Dynamics↗

Unified Theory for Aircraft Handling Qualities and Adverse Aircraft-Pilot Coupling

A unified theory for aircraft handling qualities and adverse aircraft-pilot coupling or pilot-induced oscillations is introduced. The theory is based on a structural model of the human pilot. A methodology is presented for the prediction of (1) handling qualities levels; (2) pilot-induced oscillation rating levels; and (3) a frequency range in which pilot-induced oscillations are likely to occur. Although the dynamics of the force-feel system of the cockpit inceptor is included, the methodology will not account for effects attributable to control sensitivity and is limited to single-axis tasks and, at present, to linear vehicle models. The theory is derived from the feedback topology of the structural model and an examination of flight test results for 32 aircraft configurations simulated by the U.S. Air Force/CALSPAN NT-33A and Total In-Flight Simulator variable stability aircraft. An extension to nonlinear vehicle dynamics such as that encountered with actuator saturation is discussed.

Hess, R. A.↗

Parallel processing environment for multi-flexible body dynamics

The implementation of a dynamics solution algorithm with inherent parallelism which is applicable to the dynamics of large flexible space structures is described. The algorithm is unique in that parts of the solution can be computed simultaneously by working with different branches of its tree topology. The algorithm exhibits close to 0(n) type behavior. The data flow within the solution algorithm is discussed along with results from its implementation in a multiprocessing environment. A model of the United States Space Station is used as an example. The results show that, with fast multiple scalar processors, an efficient algorithm, and symbolically generated equations of motion, real-time performance can be achieved with present-day hardware technology, even with complex dynamical models.

Venugopal, Ravi↗

Characterization of dynamic stall phenomenon using two-dimensional unsteady Navier-Stokes equations

Among the new significant aspects of the present work are: (1) the treatment of the far-field boundary; (2) the use of C-grid topology, with the branch-cut singularity treated analytically; (3) evaluation of the effect of the envelope of prevailing initial states, and finally; (4) the ability to employ streakline/pathline 'visualization' to probe the unsteady features prevailing in vortex-dominated flows. The far-field boundary is placed at infinity, using appropriate grid stretching. This contributes to the accuracy of the solutions, but raised a number of important issues which needed to be resolved; this includes determining the equivalent time-dependent circulation for the pitching airfoil. A secondary counter-clockwise vortex erupts from within the boundary layer and immediately pinches off the energetic leading-edge shear layer which then, through hydrodynamic instability, rolls up into the dynamic stall vortex. The streakline/pathline visualization serves to provide information for insight into the physics of the unsteady separated flow.

Ghia, K. N.↗