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At least 163 records · Page 9

Biogeography of microbial bile acid transformations along the murine gut

Bile acids, which are synthesized from cholesterol by the liver, are chemically transformed along the intestinal tract by the gut microbiota, and the products of these transformations signal through host receptors, affecting overall host health. These transformations include bile acid deconjugation, oxidation, and 7α-dehydroxylation. An understanding of the biogeography of bile acid transformations in the gut is critical because deconjugation is a prerequisite for 7α-dehydroxylation and because most gut microorganisms harbor bile acid transformation capacity. Here, we used a coupled metabolomic and metaproteomic approach to probe in vivo activity of the gut microbial community in a gnotobiotic mouse model. Results revealed the involvement of Clostridium scindens in 7α-dehydroxylation, of the genera Muribaculum and Bacteroides in deconjugation, and of six additional organisms in oxidation (the genera Clostridium, Muribaculum, Bacteroides, Bifidobacterium, Acutalibacter, and Akkermansia). Furthermore, the bile acid profile in mice with a more complex microbiota, a dysbiosed microbiota, or no microbiota was considered. For instance, conventional mice harbor a large diversity of bile acids, but treatment with an antibiotic such as clindamycin results in the complete inhibition of 7α-dehydroxylation, underscoring the strong inhibition of organisms that are capable of carrying out this process by this compound. Finally, a comparison of the hepatic bile acid pool size as a function of microbiota revealed that a reduced microbiota affects host signaling but not necessarily bile acid synthesis. In this study, bile acid transformations were mapped to the associated active microorganisms, offering a systematic characterization of the relationship between microbiota and bile acid composition.

59 BASIC BIOLOGICAL SCIENCES↗

Photometric and Spectroscopic Analysis of Four Contact Binaries

We present the photometric and spectroscopic analysis of four W UMa binaries J015829.5+260333 (hereinafter as J0158), J030505.1+293443 (hereinafter as J0305), J102211.7+310022 (hereinafter as J1022), and KW Psc. The VR {sub c} I {sub c} band photometric observations are carried out with the 1.3 m Devasthal Fast Optical Telescope (DFOT). For low-resolution spectroscopy, we used the 2 m Himalayan Chandra Telescope (HCT) as well as the archival data from the 4 m LAMOST survey. The systems J0158 and J0305 show a period increase rate of 5.26( ± 1.72) × 10{sup −7} days yr{sup −1} and 1.78( ± 1.52) × 10{sup −6} days yr{sup −1}, respectively. The period of J1022 is found to be decreasing with a rate of 4.22 ( ± 1.67) × 10{sup −6} days yr{sup −1}. The period analysis of KW Psc displays no change in its period. The PHOEBE package is used for the light-curve modeling and basic parameters are evaluated with the help of the GAIA parallax. The asymmetry of light curves is explained with the assumption of cool spots at specific positions on one of the components of the system. On the basis of temperatures, mass ratios, fill-out factors, and periods, the system J1022 is identified as a W-subtype system while the others show some mixed properties. To probe the chromospheric activities in these W UMa binaries, their spectra are compared with the known inactive stars’ spectra. The comparison shows emission in H {sub α}, H {sub β}, and Ca II. To understand the evolutionary status of these systems, the components are plotted in mass–radius and mass–luminosity planes with other well characterized binary systems. The secondary components of all the systems are away from ZAMS, which indicates that the secondary is more evolved than the primary component.

47 OTHER INSTRUMENTATION↗

Experimental evidence for beta-decay as a source of chirality by enantiomer analysis

Earlier experiments testing the Vester-Ulbricht beta-decay hypothesis for the origin of molecular chirality are reviewed, followed by descriptions of experiments involving attempted asymmetric radiolysis of DL-amino acids using quantitative gas chromotography as a probe for optical activity. The radiation sources included Sr-90-Y-90, C-14, and P-32 Bremsstrahlen, longitudinally polarized electrons from a linear accelerator and longitudinally polarized protons from a cyclotron. With the possible exception of the linear accelerator irradiations, these experiments failed to produce g.c.-detectable enantiomeric excesses, even at 50-70 percent gross radiolysis. Thus no unambiguous support for the Vester-Ulbricht hypothesis is found in any of the attempted asymmetric radiolyses performed to date. Radioracemization, a possible reason for these failures, is discussed.

Bonner, W. A.↗

Pigmenting agents in Martian soils: inferences from spectral, Mossbauer, and magnetic properties of nanophase and other iron oxides in Hawaiian palagonitic soil PN-9

We have examined a Hawaiian palagonitic tephra sample (PN-9) that has spectroscopic similarities to Martian bright regions using a number of analytical techniques, including Mossbauer and reflectance spectroscopy, X-ray diffraction, instrumental neutron activation analysis, electron probe microanalysis, transmission electron microscopy, and dithionite-citrate-bicarbonate extraction. Chemically, PN-9 has a Hawaiitic composition with alkali (and presumably silica) loss resulting from leaching by meteoric water during palagonitization; no Ce anomaly is present in the REE pattern. Mineralogically, our results show that nanophase ferric oxide (np-Ox) particles (either nanophase hematite (np-Hm) or a mixture of ferrihydrite and np-Hm) are responsible for the distinctive ferric doublet and visible-wavelength ferric absorption edge observed in Mossbauer and reflectivity spectra, respectively, for this and other spectrally similar palagonitic samples. The np-Ox particles appear to be imbedded in a hydrated aluminosilicate matrix material; no evidence was found for phyllosilicates. Other iron-bearing phases observed are titanomagnetite, which accounts for the magnetic nature of the sample; olivine; pyroxene; and glass. By analogy, np-Ox is likely the primary pigmenting agent of the bright soils and dust of Mars.

Minerals/analysis↗

Early immune response and regulation of IL-2 receptor subunits

Affymetrix oligonucleotide arrays were used to monitor expression of 8796 genes and probe sets in activated T-cells; analysis revealed that 217 genes were significantly upregulated within 4 h. Induced genes included transcription factors, cytokines and their receptor genes. Analysis by semi-quantitative RT-PCR confirmed the significant induction of IL-2, IL-2R(gamma) and IL-2R(alpha). Forty-eight of the 217 induced genes are known to or predicted to be regulated by a CRE promoter/enhancer. We found that T-cell activation caused a significant increase in CREB phosphorylation furthermore, inhibition of the PKC pathway by GF109203 reduced CREB activation by 50% and inhibition of the PKA pathway caused a total block of CREB phosphorylation and significantly reduced IFN(gamma), IL-2 and IL-2R(alpha) gene expression by approximately 40% (p<0.001). PKC(theta) plays a major role in T-cell activation: inhibition of PKC significantly reduced the expression of IFN(gamma), IL-2 and IL-2R(alpha). Since PKC blocked activation of CREB, we studied potential cross-talk between the PKC and the PKA/MAPK pathways, PMA-stimulated Jurkat cells were studied with specific signal pathway inhibitors. Extracellular signal-regulated kinase-2 (ERK2) pathway was found to be significantly activated greater than seven-fold within 30 min; however, there was little activation of ERK-1 and no activation of JNK or p38 MAPK. Inhibition of the PKA pathway, but not the PKC pathway, resulted in inhibition of ERK1/2 activation at all time points, inhibition of MEK1 and 2 significantly blocked expression of IL-2 and IL-2R(alpha). Gene expression of IL-2R(alpha) and IFN(gamma) was dependent on PKA in S49 wt cells but not in kin- mutants. Using gel shift analysis, we found that forskolin activation of T-cells resulted in activation of AP1 sites; this increase in nuclear extract AP1 was significantly blocked by MEK1 inhibitor U0126. Taken together, these results suggest that the PKA in addition to PKC and MAPK pathways plays a role in early T-cell activation and induction of IL-2, IL-2R(alpha) and IFN(gamma) gene expression.

Non-NASA Center↗

Microbial Bioburden on NASA Cleanroom Surfaces: Cell Counting and Fluorescence in situ Hybridization

Spacecraft assembly cleanrooms can harbor a low number of microbial cells that could contaminate hardware designed for life detection missions (known as “bioburden”). We are evaluating epifluorescence microscopy and fluorescence in situ hybridization (FISH) as rapid, accurate, and cost-effective methods to complement other contamination detection techniques. This study is part of a larger effort to characterize background organic contamination and the efficacy of cleaning procedures in Johnson Space Center (JSC) Astromaterials Curation Laboratories and Goddard Space Flight Center (GSFC) spacecraft assembly rooms. The low level of biomass required careful use of blanks during each stage of sample collection and preparation. FISH was performed using general archaeal and bacterial probes, as well as some group-specific probes. While some active bacteria were identified, a large majority of them were dead or inactive, and thus were difficult to identify by standard FISH. Our results are consistent with other studies that show that the bioburden present in clean rooms includes active, dormant, and dead cells.

C J Huff↗

Atomic Layer Deposition for Spatial Control of Redox Reaction Selectivity

Photocatalytic water splitting holds great potential in the pursuit of the U.S. Department of Energy's Hydrogen Shot initiative to bring the cost of H2 to $1/kg by 2031. A key challenge in the development of photocatalysts is increasing their overall solar-to-hydrogen efficiency by enhancing charge separation yields and redox selectivity. In this work, we use area selective ALD of oxide films to develop tunable interphase layers for selective oxidation and reduction reactions on a single substrate. This presentation details initial synthesis and characterization of Pt- and Au-based planar thin film electrodes in which Au regions were deactivated towards ALD growth through self-assembled thiol monolayers. The suppression of TiO2 ALD selectivity of thiols was assessed through ellipsometry, X-ray photoelectron spectroscopy (XPS), and cyclic voltammetry. A patterned planar sample comprised of interdigitated arrays of Au and Pt, used as a surrogate for a photocatalyst particle containing two different co-catalysts, was exposed to ALD growth and removal of the inhibitor species. Scanning electrochemical microscopy (SECM) was used then to probe the local activity of different regions of the patterned surface towards the hydrogen evolution reaction (HER) and iron oxidation and correlated with the ionic and e- blocking effects of the area selective ALD coating. We will also detail the application of these findings to the ongoing development of 3D, particle-based photocatalysts.

atomic layer deposition↗

Probing circular polarization and magnetic field structure in active galactic nuclei

The composition and magnetic field morphology of relativistic jets can be studied using circular polarization (CP) measurement. Recent three-dimensional relativistic magnetohydrodynamic (3D RMHD) simulations coupled with radiative transfer (RT) calculations make strong predictions about the level (and morphology) of the jet’s CP emission. These simulations show that the sign of CP and the electric vector position angle (EVPA) are both sensitive to the jet’s magnetic field morphology within the radio core. We probe this theory by exploring whether the jet’s radio core EVPA orientation is consistent with the observed sign of the core CP in deep full-track polarimetric observations. Based on a selection of sources from earlier MOJAVE observations, we aim to probe the nature of linear polarization (LP) and CP in the innermost regions of jets from a small sample of nine blazars. This sample includes sources that have exhibited: (i) positive CP; (ii) negative CP; or (iii) positive and negative CP simultaneously in the radio core region. By coupling deep polarimetric observations of a carefully selected sample of blazars with state-of-the-art RMHD and RT calculations, we hope to gain a deeper understanding of the physics of blazar jets.

79 ASTRONOMY AND ASTROPHYSICS↗

Interpreting Broad Double-Peaked Emission Lines in Active Galactic Nuclei

The principal objectives of this project were to probe the inner regions of active galactic nuclei and to test general relativity in the strong-field limit. The approach takes advantage of broad atomic line emission observed from material deep in the potential well of an active galactic nucleus which contains key information as to the physics of the system. Line profiles in a wide range of wavebands from optical to X-ray have provided compelling evidence of the existence of a relativistic accretion disk around a supermassive black hole in a number of galaxies. The simplest model posits a geometrically thin disk in Keplerian orbit, with general relativistic effects in evidence. This model is the point of departure for the proposed work. We developed a high-performance numerical code to calculate photon trajectories in a Schwarzschild or Kerr metric and implemented it on parallel supercomputers. This code includes a general purpose ray tracer that calculates line profiles, light curves, and other observable quantities for a wide variety of emitter configurations. The versatility comes from the fact that the ray tracing algorithm does not depend on any symmetries regarding emitter locations. The speed comes from parallel implementation which enables us to sample hitherto unattainable volumes of disk model parameter space. During the period 1 March 1997 through 28 February 1998, two papers, supported in whole or in part by this grant, were published in refereed journals. They are reproduced in their entirety in the next two sections of this report.

Halpern, Jules↗

On the Star Formation-AGN Connection at zeta (is) approximately greater than 0.3

Using the spectra of a sample of approximately 28,000 nearby obscured active galaxies from Data Release 7 of the Sloan Digital Sky Survey (SDSS), we probe the connection between active galactic nucleus (AGN) activity and star formation over a range of radial scales in the host galaxy. We use the extinction-corrected luminosity of the [O iii] 5007A line as a proxy of intrinsic AGN power and supermassive black hole (SMBH) accretion rate. The star formation rates (SFRs) are taken from the MPA-JHU value-added catalog and are measured through the 3 inch SDSS aperture. We construct matched samples of galaxies covering a range in redshifts. With increasing redshift, the projected aperture size encompasses increasing amounts of the host galaxy. This allows us to trace the radial distribution of star formation as a function of AGN luminosity. We find that the star formation becomes more centrally concentrated with increasing AGN luminosity and Eddington ratio. This implies that such circumnuclear star formation is associated with AGN activity, and that it increasingly dominates over omnipresent disk star formation at higher AGN luminosities, placing critical constraints on theoretical models that link host galaxy star formation and SMBH fueling. We parameterize this relationship and find that the star formation on radial scales (is) less than 1.7 kpc, when including a constant disk component, has a sub-linear dependence on SMBH accretion rate: SFR in proportion to solar mass(sup 0.36), suggesting that angular momentum transfer through the disk limits accretion efficiency rather than the supply from stellar mass loss.

LaMassa, Stephanie M.↗

Molybdenum oxide and sulfide active sites for isobutane dehydrogenation with methanol as a probe molecule

Molybdenum oxides and sulfides are alternative catalysts for several reactions, including alkane dehydrogenation. Correlations have been developed between reactivity and structure, but it is difficult to compare different catalysts without determining numbers of active sites. Here, methanol temperature programmed surface reaction (TPSR) is applied to bulk MoS 2 and a series of supported molybdenum oxides and sulfides used for isobutane dehydrogenation. Rates and deactivation behavior are similar between supported molybdenum oxides and sulfides. Coking increases with loading and correlates well with the fraction of Mo-based CO 2 -forming sites from methanol TPSR. Normalizing isobutane dehydrogenation rates by formaldehyde-forming sites unifies rates over oxide and sulfide materials. Further, these measurements confirm earlier hypotheses that MoS 2 and higher loadings of oxides and sulfides are intrinsically fast catalysts, but they have few active sites and are prone to coking. In general, methanol TPSR is proposed as an accessible route to count sites on both supported oxides and sulfides.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Probing dense plasmas for HEDS and ICF*

This paper is a retrospective of almost four decades of conceptualization and development of active x-ray probing of dense plasmas, involving multiple teams. In hindsight it was a surprisingly nonlinear and nonsystematic progression, with cycles of key epiphanies followed by multi-step technique optimization, spanning years.Further, each new idea or endeavor, whether or not realized / successful, spawned the next, and not necessarily in order of difficulty. The journey can be summarized by adapting/paraphrasing what Edward Teller said about NIF, that we develop new capabilities precisely because we don't know what those capabilities will enable.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Use of Au@Void@TiO 2 yolk-shell nanostructures to probe the influence of oxide crystallinity on catalytic activity for low-temperature oxidations

A series of Au@Void@TiO 2 yolk-shell structures were synthesized and characterized, and their catalytic activity was tested for the oxidation of carbon monoxide. The target of this study was to evaluate the effects of (1) the crystallinity of the TiO 2 shell and (2) the presence of titanate phases. Transmission electron microscopy and X-ray diffraction data show that increasing calcination temperatures, from 850 to 1250 K, leads to the formation of larger titania crystallites. These crystallites are typically in the form of anatase, but some rutile is also made at high temperatures. The general yolk-shell nanostructures retain their basic characteristics upon calcination and upon treatment with HCl (used to remove the titanate phases), but a few structural and chemical changes do take place: (1) the void-space diameter is reduced by approximately 10% when going from T Calc = 850 K to T Calc = 1250 K, a change that is accompanied by a decrease in the surface area (estimated from N 2 adsorption-desorption isotherms); (2) the shell thickness remains unaffected by either calcination or HCl treatment; (3) the pore volume also remains approximately constant with increasing calcination temperature in the catalysts free of titanates but diminishes significantly in the samples with titanate phases; (4) the mesoporosity is minimal in all yolk-shell nanostructures but more noticeable with the pure TiO 2 shells; (5) the titanates have high Na content (measured by X-ray photoelectron spectroscopy), but that Na is fully removed upon treatment with HCl; (6) no Ti 3+ was detectable in any of the samples, but silica, together with C and (minor amounts of) N, was present in all; (7) all Au is in metallic form; (8) two temperature regimes were observed for the catalytic oxidation of CO, as reported for other similar samples in the past, an Arrhenius regime around or above room temperature, and a cryogenic range going to temperatures as low as 120 K; (9) the latter regime is only seen with the samples containing titanate phases; (10) the titanates seem to also aid in the oxidation at higher temperatures; and (11) in general, increasing titania crystallinity leads to a decrease the catalytic activity.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Probing the SARS-CoV-2 main protease active site as a target to inhibit viral replication

SARS-CoV-2 replication involves the synthesis of two large proteins, which are inactive and harmless until the viral main protease enzyme (3CL M pro ) uses them as substrates, cleaving them into many smaller, functional products. Dr Andrey Kovalevsky and his team from Oak Ridge National Laboratory propose a design of novel inhibitors and the repurposing of clinical drugs developed to treat other diseases for the treatment of COVID-19. Finally, the team uses room temperature crystallography with X-rays and neutrons to guide structure-based and computer-assisted drug design and to assess the ability of drugs to inhibit the SARS-CoV-2 main protease, causing virus replication to stop.

Kneller, Daniel↗

Overview of IMPACT Data Acquisition System and Data Reduction Process

This report documents the development of the data acquisition system (DAS) and data reduction methodologies for the Irradiated Material Property Accelerated Characterization Test (IMPACT) experiment at the Advanced Test Reactor (ATR). The IMPACT experiment is designed to enable in-pile measurement of thermal conductivity in metallic nuclear fuels, specifically U-10Zr, using an instrumented thermal conductivity probe. The DAS supports both passive temperature monitoring and active thermal interrogation of the probe through controlled AC and DC excitation. Significant modifications to laboratory-scale systems were required to accommodate the higher resistance paths associated with the in-pile application. Custom electronics and relay-controlled measurement sequencing were developed to enable the measurement and sufficient power delivery to the sensing region. A reduced-order, axisymmetric thermal model based on the thermal quadrupoles method is presented to support data interpretation. This model enables efficient evaluation of transient heat transfer behavior and facilitates solution of the inverse problem required to extract thermal properties from measured signals. Multiple boundary condition formulations are discussed to address varying experimental time scales and geometries. Additionally, machine learning techniques are introduced to support data reduction and improve confidence in inverse solutions. Convolutional neural networks are applied to identify the presence of gas gaps and other evolving geometric features that significantly impact thermal response during irradiation. These efforts contribute to the broader integration of digital twin frameworks and real-time modeling capabilities within the Advanced Fuels Campaign.

46 - INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AN↗

Signatures of a spin-active interface and a locally enhanced Zeeman field in a superconductor-chiral material heterostructure

A localized Zeeman field, intensified at heterostructure interfaces, could play a crucial role in a broad area including spintronics and unconventional superconductors. Conventionally, the generation of a local Zeeman field is achieved through magnetic exchange coupling with a magnetic material. However, magnetic elements often introduce defects, which could weaken or destroy superconductivity. Alternatively, the coupling between a superconductor with strong spin-orbit coupling and a nonmagnetic chiral material could serve as a promising approach to generate a spin-active interface. Here, we leverage an interface superconductor, namely, induced superconductivity in noble metal surface states, to probe the spin-active interface. Our results unveil an enhanced interface Zeeman field, which selectively closes the surface superconducting gap while preserving the bulk superconducting pairing. The chiral material, i.e., trigonal tellurium, also induces Andreev bound states (ABS) exhibiting spin polarization. The field dependence of ABS manifests a substantially enhanced interface Landég-factor (g eff ~ 12), thereby corroborating the enhanced interface Zeeman energy.

Science & Technology - Other Topics↗

Study of Coronal Heating in Solar Active Regions Using Wide-Field Imaging Spectroscopy: Hinode EIS Slot Observations

Understanding the frequency of heating events that keep the coronal plasma at several million Kelvin above the photospheric temperature of~ 6000K, is one of the most important problems in solar astrophysics. Spectroscopic observations of the Sun in the extreme ultraviolet (EUV) indicate that the coronal plasma reaches temperatures from 1 to 5 MK in active regions. It is also established that temperature in active regions can vary strongly with time and, moreover, contain sub-regions that evolve and develop separately. Tracking the spatio-temporal evolution of temperature requires continuous observation of the entire active region via imaging and spectroscopy. Traditional slit imaging spectroscopy probes plasma heating in solar active regions through observations of diagnostic emission lines and the resulting data are spectrally pure. Here, imaging is performed through rastering process, which severely limits co-temporal observations and often can be slow to miss events that evolve at other portions of the active region. In contrast, wide-field imaging spectroscopy offer simultaneous coverage of a large field of view as well as obtain spectral information in the same direction. This data suffers from spatial-spectral confusion, and are called spectroheliograms. Using the state-of-the-art inversion techniques that are developed recently, now spectroheliogram data can be unfolded to yield spectrally pure maps of large fields over long duration of observations. We use wide slit data, usually referred as ‘slot’, from the EUV Imaging Spectrometer (EIS) onboard Hinode satellite, focusing on active region observations. Here, we present our study of coronal heating in an active region using a long duration Hinode EIS slot observation.

Active region heating↗