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At least 163 records · Page 9

β-decay feeding intensity distributions for 103,104m Nb

The β decays of 103,104m Nb were studied with the Summing NaI(Tl) (SuN) detector at the National Superconducting Cyclotron Laboratory. The β-decay feeding intensity distribution I β (E) for each isotope was extracted by measuring γ rays in coincidence with an emitted electron. The I β (E) was extracted via the total absorption spectroscopy technique. The I β (E) for each nucleus was compared to predictions made by the quasiparticle random-phase approximation (QRPA) model which is commonly used to calculate β-decay properties for astrophysical applications. The main goal was to provide experimental data for neutron-rich nuclei, relevant to the astrophysical r process. In addition, the extracted β-decay feeding intensity distributions can lead to a better understanding of nuclear structure in a region of rapid structure changes around A = 100. Finally, experimental data for 104m Nb are also of interest to antineutrino studies of nuclear reactors

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Spatio-Temporal Deep Graph Network for Event Detection, Localization, and Classification in Cyber-Physical Electric Distribution System

This work proposes a deep graph learning framework to identify, locate, and classify power, cyber, and cyber power events at the distribution system level. The proposed algorithm jointly exploits spatial, temporal, and node-level cyber and physical data features. The developed graph neural network, together with a deep autoencoder, utilizes physical measurements from distribution level phasor measurement units and cyber data from communication network logs. The spatial structure of the synchrophasor measurements and network is incorporated through a weighted adjacency matrix. The temporal structure is incorporated by defining a spatial operation in the gated recurrent unit. This spatio-temporal learning element resides inside a power event detection, localization, and classification module that provides the degree of confidence for an event label. To accurately pinpoint the location of an event to the nearest bus equipped with a measurement unit, a combination of squared error and proximity score is utilized. Also included is a cyber event detection module that employs heteroskedasticity to analyze the significance of various cyber features during different types of attacks. Finally, a dual-bit cyber-power decision table determines the nature of the event. The proposed method is validated on two distribution systems modeled in OPAL-RT/Hypersim with limited phasor measurement units for different possible physical and cyber events. Further analyses include comparison with other state-of-the-art methods and validation in the presence of measurement noise. As a result, our method outperforms existing approaches and achieves an average detection accuracy of 97.97%, F1-score of 96.88%, precision of 96.53%, and recall of 98.57%.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Spin-glass behavior and vacancy order in van der Waals layered β - MoCl 4

Two-dimensional ${\beta}\text{-}{\mathrm{MoCl}}_{4}$ is an attractive material from the perspectives of magnetism in $4d$ transition metal compounds, geometrically frustrated lattices, and magnetic van der Waals layered materials, but the magnetism in this compound has not been particularly well studied to date. In this paper the magnetic properties and crystal structure of ${\mathrm{MoCl}}_{4}$ are revisited, and results of ac and dc magnetic measurements and single crystal x-ray diffraction are reported. Crystals grow as well-formed and easily cleaved hexagonal plates that are unstable in air. The revised structural model comprises ${\mathrm{CdCl}}_{2}$-type layers with 50% Mo vacancies distributed over the sites of the triangular cation net. Interestingly, a structural ambiguity regarding the vacancy distribution is identified in the analysis of the diffraction data. The orbital moment is not expected to be quenched in this $4{d}^{2}$ compound. Accordingly, magnetization measurements indicate an effective moment that is about 20% lower than the spin-only value. The magnetic data reveal an anomaly near 5 K, below which a divergence of field-cooled and zero-field-cooled dc magnetization, a slow relaxation of thermoremanent magnetization, and enhanced frequency dependence of ac magnetization are observed. Finally and thus, ${\beta}\text{-}{\mathrm{MoCl}}_{4}$ represents an uncommon example of a cleavable spin-glass system.

36 MATERIALS SCIENCE↗

Surface distribution of heterogenous clathrin assemblies in resorbing osteoclasts

Highlights: • Platinum replica microscopy has revealed new structural data on the clathrins on the ventralmembrane of osteoclasts. • Various clathrins were visualized, suggesting that they followed variations in the surface topography of the apatite. • Most of the flat clathrins may participate in the adhesive and mechnosensory functions in co-operation with podosomes. • The present findings in osteoclast biology reveal potential novel drug targets or treatment regimens. Osteoclasts seeded on either glass coverslips or apatite pellets have at least two morphologically distinct substrate adhesion sites: actin-based adhesion structures including podosome belts and sealing zones, and adjacent clathrin sheets. Clathrin-coated structures are exclusively localized at the podosome belts and sealing zone, in both of which the plasma membrane forms a tight attachment to the substrate surface. When cultured on apatite osteoclasts can degrade the apatite leading to the formation of resorption lacunae. The sealing zone divides the ventral membrane into different domains, outside and inside of the sealing zones. The former facing the smooth-surfaced intact apatite contains relatively solitary or networks of larger flat clathrin structures; and the latter, facing the rough-surfaced degraded apatite in the resorption lacunae contain clathrin in various shapes and sizes. Clathrin assemblies on the membrane domain facing not only a resorption lacuna, or trails but also intact apatite indeed were observed to be heterogeneous in size and intensity, suggesting that they appeared to follow variations in the surface topography of the apatite surface. These results provide a detailed insight into the flat clathrin sheets that have been suggested to be the sites of adhesion and mechanosensing in co-operation with podosomes.

60 APPLIED LIFE SCIENCES↗

Cabana

Physics simulations that use particles in their algorithms are ubiquitous on modern high performance computers. Cabana is a C++ library for developing particle-based simulations on heterogeneous high performance computing platforms. Cabana provides general data structures and algorithms for common particle operations in a way that is both performant and portable on HPC systems. This includes particle data structure allocatable and configurable on GPU and CPU architectures, and threaded and distributed algorithms for sorting particles, halo exchanges, neighbor list generation, and other basic particle operations.

Slattery, StuartR↗

Validation of Play Fairway Analysis of the geothermal potential of Camas Prairie, south-central Idaho, by an exploration well

Abstract Play Fairway Analysis (PFA) methodology was adapted for geothermal exploration at Camas Prairie, Idaho. Geophysical data, structural and geologic mapping, volcanic rock ages and vent locations, and the distribution of thermal springs and wells all indicated a relatively high geothermal potential along the southern margin of the Prairie. An exploration well (USU Camas-1) was drilled to a depth of 618.3 m to validate the PFA. A permeable zone was encountered at ~ 357.5 m with a maximum measured temperature of ~ 80 °C, which was suppressed following the injection of cold water. A moderate transmissivity of ~ 0.25–1 cm 2 /s estimated from an injection test as well a seasonal artesian flow at ~ 0.7 L/s corroborate the presence of a permeable zone. The existence of a lacustrine clay seal was confirmed near the bottom of the basin-fill sediment occupying the upper 314 m of the well. Geothermometers suggest the USU Camas-1 well water equilibrated at a reservoir temperature of ~ 120 °C. Based on the locations of both thermal and cold wells, geothermal fluids appear to be flowing upward along one or both of two fault systems. The presence of young basalts and elevated helium isotope ratios suggest that the heat source of Camas Prairie is magmatic. However, the faults may be acting as a conduit for geothermal fluids to rise from great depth without a shallow magmatic source being present. Camas Prairie is a promising area for geothermal development, but the relatively low reservoir temperatures indicate this resource may not be suitable for electric generation. Perhaps the best use would be for heating.

Lachmar, Thomas E. (ORCID:0000000249640119)↗

ATDM LANL FleCSI: Topology and Execution Framework

FleCSI is a compile-time configurable C++ framework designed to support multi-physics application development. As such, FleCSI attempts to provide a very general set of infrastructure design patterns that can be specialized and extended to suit the needs of a broad variety of solver and data requirements. This means that FleCSI is potentially useful to many different ECP projects. Current support includes multidimensional mesh topology, mesh geometry, and mesh adjacency information, n-dimensional hashed-tree data structures, graph partitioning interfaces, and dependency closures (to identify data dependencies between distributed-memory address spaces). FleCSI introduces a functional programming model with control, execution, and data abstractions that are consistent with state-of-the-art task-based runtimes such as Legion and Charm++. The model also provides support for fine-grained, data-parallel execution with backend support for runtimes such as OpenMP and C++17. The FleCSI abstraction layer provides the developer with insulation from the underlying runtimes, while allowing support for multiple runtime systems, including conventional models like asynchronous MPI. The intent is to give developers a concrete set of user-friendly programming tools that can be used now, while allowing flexibility in choosing runtime implementations and optimizations that can be applied to architectures and runtimes that arise in the future. This project is essential to the ECP Ristra Next-Generation Code project, part of ASC ATDM, because it provides a hierarchically parallel programming model that is consistent with the design of modern system architectures, but which allows for the straightforward expression of algorithmic parallelism in a portably performant manner.

97 MATHEMATICS AND COMPUTING↗

“Inverting” X-ray Absorption Spectra of Catalysts by Machine Learning in Search for Activity Descriptors

The rapid growth of methods emerging in the past decade for synthesis of “designer” catalysts—ranging from the size and shape-selected nanoparticles to mass-selected clusters, to precisely engineered bimetallic surfaces, to single site and pair site catalysts—has opened opportunities for tailoring the catalyst structure for the desired activity and selectivity. It has also sharpened the need for developing approaches to the operando characterization, ones that identify the catalytic active sites and follow their evolutions in reaction conditions. Commonly used methods for determination of the activity descriptors in the nanocatalysts, based on the correlation between the changes in catalyst performance and evolution of its structural and electronic properties, are hampered by the paucity of experimental techniques that can detect such properties with high accuracy and in reaction conditions. Out of many such techniques, X-ray absorption spectroscopy (XAS) stands out as an element-specific method that is very sensitive to the local geometric and electronic properties of the metal atoms and their surroundings and, therefore, is able to track catalyst structure modifications in operando conditions. Despite the vast amount of structure-specific information (such as, e.g., the charge states and radial distribution function of neighbors of selected atomic species) stored in the XAS data of catalysts, extracting it from the spectra is challenging, especially in the conditions of low metal weight loading, nanoscale dimensions, heterogeneous size and composition distributions, and harsh reaction environment. In this Perspective, we discuss the recent developments in XAS data analysis achieved by employing supervised and unsupervised machine learning (ML) methods for structural characterization of catalysts. By benefiting from the sensitivity of ML methods to subtle variations in experimental data, a previously “hidden” relationship between the X-ray absorption spectrum and descriptors of material’s structure and/or composition can be found, as illustrated on representative examples of mono-, hetero-, and nonmetallic catalysts. In the case of supervised ML, the experimental spectra can be rapidly “inverted”, and the structure of the catalyst can be tracked in real time and in reaction conditions. Finally, emerging opportunities for catalysis research that the ML methods enable, such as high-throughput data analysis, and their applications to other experimental probes of catalyst structure are discussed.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

High-pressure structural systematics of dysprosium metal compressed in a neon pressure medium to 182 GPa

Here we present an experimental and theoretical study of dysprosium metal compressed in the soft pressure transmitting medium Ne up to 182 and 300 GPa, respectively. Angle-dispersive x-ray powder diffraction data from each of the high-pressure polymorphs shows anisotropic compression behavior indicating changes to the electron density distribution throughout its polymorphic landscape. We compare the monoclinic (mC4) and orthorhombic (oF16) structures for the collapsed structure for Dy above 82 GPa and verify that the oF16 structure offers a better fit to our data than the previously reported mC4 structure. Further, we have found that the oF16 structure undergoes similar anisotropic compression of its lattice parameters, with a turning point above 160 GPa; suggesting a potential phase transition at pressures much higher than achieved in this study. Density functional theory calculations show the likely candidate for this new high-pressure phase is the isosymmetric oF8 structure, which is predicted to be lower in energy than the oF16 structure above 275 GPa.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

PaKman: Scalable Assembly of Large Genomes on Distributed Memory Machines

De novo genome assembly is a fundamental problem in the field of bioinformatics, that aims to assemble the DNA sequence of an unknown genome from numerous short DNA fragments (aka reads) obtained from it. With the advent of high-throughput sequencing technologies, billions of reads can be generated in a matter of hours, necessitating efficient parallelization of the assembly process. While multiple parallel solutions have been proposed in the past, conducting a large- scale assembly at scale remains a challenging problem because of the inherent complexities associated with data movement, and irregular access footprints of memory and I/O operations. In this paper, we present a novel algorithm, called PaKman, to address the problem of performing large-scale genome assemblies on a distributed memory parallel computer. Our approach focuses on improving performance through a combination of novel data structures and algorithmic strategies for reducing the communication and I/O footprint during the assembly process. A key aspect of our algorithm is its graph data structure, which comprises fat nodes (or what we call "macro-nodes") that reduce the communication burden during contig generation. We present an extensive performance and qualitative evaluation of our algorithm, including comparisons to other state-of-the-art parallel assemblers. Our results demonstrate the ability to achieve near-linear speedups on up to 8K cores (tested); outperform state-of-the-art distributed memory and shared memory tools in performance while delivering comparable (if not better) quality; and reduce time to solution significantly. For instance, PaKman is able to complete an assembly of the full human genome in just over a minute on 8K cores.

Ghosh, Priyanka↗

Local and long-range atomic/magnetic structure of non-stoichiometric spinel iron oxide nanocrystallites

Spinel iron oxide nanoparticles of different mean sizes in the range 10–25 nm have been prepared by surfactant-free up-scalable near- and super-critical hydrothermal synthesis pathways and characterized using a wide range of advanced structural characterization methods to provide a highly detailed structural description. The atomic structure is examined by combined Rietveld analysis of synchrotron powder X-ray diffraction (PXRD) data and time-of-flight neutron powder-diffraction (NPD) data. The local atomic ordering is further analysed by pair distribution function (PDF) analysis of both X-ray and neutron total-scattering data. It is observed that a non-stoichiometric structural model based on a tetragonal γ-Fe 2 O 3 phase with vacancy ordering in the structure (space group P 4 3 2 1 2) yields the best fit to the PXRD and total-scattering data. Detailed peak-profile analysis reveals a shorter coherence length for the superstructure, which may be attributed to the vacancy-ordered domains being smaller than the size of the crystallites and/or the presence of anti-phase boundaries, faulting or other disorder effects. The intermediate stoichiometry between that of γ-Fe 2 O 3 and Fe 3 O 4 is confirmed by refinement of the Fe/O stoichiometry in the scattering data and quantitative analysis of Mössbauer spectra. The structural characterization is complemented by nano/micro-structural analysis using transmission electron microscopy (TEM), elemental mapping using scanning TEM, energy-dispersive X-ray spectroscopy and the measurement of macroscopic magnetic properties using vibrating sample magnetometry. Notably, no evidence is found of a Fe 3 O 4 /γ-Fe 2 O 3 core-shell nanostructure being present, which had previously been suggested for non-stoichiometric spinel iron oxide nanoparticles. Finally, the study is concluded using the magnetic PDF (mPDF) method to model the neutron total-scattering data and determine the local magnetic ordering and magnetic domain sizes in the iron oxide nanoparticles. The mPDF data analysis reveals ferrimagnetic collinear ordering of the spins in the structure and the magnetic domain sizes to be ∼60–70% of the total nanoparticle sizes. The present study is the first in which mPDF analysis has been applied to magnetic nanoparticles, establishing a successful precedent for future studies of magnetic nanoparticles using this technique.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Selective conversion of methane to aromatic hydrocarbons on large crystallite zeolite catalysts with mesoporous structure

Large crystallite mesoporous MFI (ZSM-5) zeolite was synthesized by using carbon nano-powder as a secondary template. The surface properties, morphological and phase composition of the synthesized material and of the commercial ZSM-5 (Zeolyst) zeolite were studied by nitrogen porosimetry, XRD and scanning electron microscopy. The results showed that the volume of mesopores volume increases with development of a secondary mesoporosity in the structure of zeolite. The obtained zeolite supports were used to prepare molybdenum-containing catalysts for the methane aromatization by solid phase preparation technique. Based on the XPS data, molybdenum particles in these catalysts are characterized by more uniform size distribution. The formation of a secondary pore structure restrains the carbon deposit formation as well as increases the methane conversion and the yield of the aromatic compounds.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

X-ray Fluorescence Nanotomography of Single Bacteria with a Sub-15 nm Beam

Abstract X-ray Fluorescence (XRF) microscopy is a growing approach for imaging the trace element concentration, distribution, and speciation in biological cells at the nanoscale. Moreover, three-dimensional nanotomography provides the added advantage of imaging subcellular structure and chemical identity in three dimensions without the need for staining or sectioning of cells. To date, technical challenges in X-ray optics, sample preparation, and detection sensitivity have limited the use of XRF nanotomography in this area. Here, XRF nanotomography was used to image the elemental distribution in individual E . coli bacterial cells using a sub-15 nm beam at the Hard X-ray Nanoprobe beamline (HXN, 3-ID) at NSLS-II. These measurements were simultaneously combined with ptychography to image structural components of the cells. The cells were embedded in small (3–20 µm) sodium chloride crystals, which provided a non-aqueous matrix to retain the three-dimensional structure of the E . coli while collecting data at room temperature. Results showed a generally uniform distribution of calcium in the cells, but an inhomogeneous zinc distribution, most notably with concentrated regions of zinc at the polar ends of the cells. This work demonstrates that simultaneous two-dimensional ptychography and XRF nanotomography can be performed with a sub-15 nm beam size on unfrozen biological cells to co-localize elemental distribution and nanostructure simultaneously.

59 BASIC BIOLOGICAL SCIENCES↗

Boson Fermion Nucleus Dimensions: Monograph #10

Assuming a spherical nucleus, scattering experiments measuring nuclear radii will give values roughly two orders of magnitude less than the radius of a boson fermion nucleus (BFN). This occurs because of the extended structure of the BFN, with nucleons and positive charge distributed in space gives the appearance of a smaller nucleus in scattering experiments. The scattering data from a BFN indicates a spherical nucleus with dimensions comparable to detailed structural features in the BFN.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

The Milky Way tomography with APOGEE: intrinsic density distribution and structure of mono-abundance populations

ABSTRACT The spatial distribution of mono-abundance populations (MAPs, selected in [Fe/H] and [Mg/Fe]) reflect the chemical and structural evolution in a galaxy and impose strong constraints on galaxy formation models. In this paper, we use APOGEE data to derive the intrinsic density distribution of MAPs in the Milky Way, after carefully considering the survey selection function. We find that a single exponential profile is not a sufficient description of the Milky Way’s disc. Both the individual MAPs and the integrated disc exhibit a broken radial density distribution; densities are relatively constant with radius in the inner Galaxy and rapidly decrease beyond the break radius. We fit the intrinsic density distribution as a function of radius and vertical height with a 2D density model that considers both a broken radial profile and radial variation of scale height (i.e. flaring). There is a large variety of structural parameters between different MAPs, indicative of strong structure evolution of the Milky Way. One surprising result is that high-α MAPs show the strongest flaring. The young, solar-abundance MAPs present the shortest scale height and least flaring, suggesting recent and ongoing star formation confined to the disc plane. Finally we derive the intrinsic density distribution and corresponding structural parameters of the chemically defined thin and thick discs. The chemical thick and thin discs have local surface mass densities of 5.62 ± 0.08 and 15.69 ± 0.32 M⊙pc−2, respectively, suggesting a massive thick disc with a local surface mass density ratio between thick to thin disc of 36 per cent.

79 ASTRONOMY AND ASTROPHYSICS↗

Deciphering the Cofilin Oligomers via Intermolecular Disulfide Bond Formation: A Coarse-Grained Molecular Dynamics Approach to Understanding Cofilin’s Regulation on Actin Filaments

Cofilin, a key actin-binding protein, orchestrates the dynamics of the actomyosin network through its actin-severing activity and by promoting the recycling of actin monomers. Recent experimental work suggests that cofilin also forms functionally distinct oligomers through thiol post-translational modification (PTM) that encourages actin nucleation and assembly. Despite these advances, the structural conformations of cofilin oligomers that modulate actin activity remain elusive because there are combinatorial ways to oxidize thiols in cysteines to form disulfide bonds rapidly. This study employs molecular dynamics simulations to investigate human cofilin 1 as a case study for exploring cofilin dimers via disulfide bond formation. Using the free energy profiling, our simulations unveil a range of probable cofilin dimer structures not represented in current Protein Data Bank entries. These candidate dimers are characterized by their distinct population distributions and relative free energies. Of particular note is a dimer featuring an interface between cysteines 139 and 147 residues, which demonstrates stable free energy characteristics and intriguingly symmetrical geometry. In contrast, the experimentally proposed dimer structure exhibits a less stable free energy profile. Here, we also evaluate frustration quantification based on the energy landscape theory in the protein-protein interactions at the dimer interfaces. Notably, the 39-39 dimer configuration emerges as a promising candidate for forming cofilin tetramers, as substantiated by frustration analysis. Additionally, docking simulations with actin filaments further evaluate the stability of these cofilin dimer-actin complexes. Our findings thus offer a computational framework for understanding the role of thiol post-translational modification cofilin proteins in regulating oligomerization, and the subsequent cofilin-mediated actin dynamics in the actomyosin network.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Using Bayesian Methodology to Estimate Liquefied Natural Gas Leak Frequencies

This analysis provides estimates on the leak frequencies of nine components found in liquefied natural gas (LNG) facilities. Data was taken from a variety of sources, with 25 different data sets included in the analysis. A hierarchical Bayesian model was used that assumes that the log leak frequency follows a normal distribution and the logarithm of the mean of this normal distribution is a linear function of the logarithm of the fractional leak area. This type of model uses uninformed prior distributions that are updated with applicable data. Separate models are fit for each component listed. Five order-of-magnitude fractional leak areas are considered, based on the flow area of the component. Three types of supporting analyses were performed: sensitivity of the model to the data set used, sensitivity of the leak frequency estimates to differences in the model structure or prior distributions, and sufficiency of sample sized used for convergence. Recommended leak frequency distributions for all component types and leak sizes are given. These leak frequency predictions can be used for quantitative risk assessments in the future.

03 NATURAL GAS↗