Search NASA⌕ Search

SEARCH · Search NASA

Results for “implicit method”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 163 records · Page 9
All sourcesNASA NTRSDOE OSTI
DOE OSTI2018

Quantum Chemical Prediction of p K a Values of Cationic Ion-Exchange Groups in Polymer Electrolyte Membranes

The durability of anion-exchange membranes (AEMs) in alkaline fuel cells is largely determined by the stability of anion-exchange groups. Despite continuous research efforts, the commonly employed cations still have limited stability against hydroxide that can act as a strong base and nucleophile. This work is concerned with base-catalyzed degradation of organic cations initiated by proton abstraction to form reactive ylides or carbenes. We report on the performance of 24 methods combining density functional theory and electronic structure methods with implicit solvation calculations for predicting pK a values of organic cations in water and DMSO. The most accurate computational protocols are obtained using a combination of M06-2X/6-311++G** with the SMD solvation model for water (the mean absolute error of 0.4 pK a units) and B3LYP/aug-cc-pVTZ with the IEFPCM solvation model for DMSO (the mean absolute error of 1.4 pK a units). The aqueous pK a calculation protocol is cross-validated against the experimental C–H acidity constants outside the conventional range of 0–14 pK a values. In conclusion, this study rationalizes alkaline degradation of imidazolium cations with C2-alkyl substituents and provides a theoretical scale of C–H acidity for potential anion-exchange groups in AEMs.

25 ENERGY STORAGE↗
DOE OSTI2019

Computational Investigation of Aqueous Phase Effects on the Dehydrogenation and Dehydroxylation of Polyols over Pt(111)

Prediction of solvation effects on the kinetics of elementary reactions occurring at metal–water interfaces is of high importance for the rational design of catalysts for the biomass and electrocatalysis communities. A lack of knowledge of the reliability of various computational solvation schemes for processes on metal surfaces is currently a limiting factor. Using a multilevel quantum mechanical/molecular mechanical (QM/MM) description of the potential energy surface, we determined characteristic time and length scales for typical free-energy perturbation (FEP) calculations of bond cleavages in ethylene glycol, a sugar surrogate molecule, over Pt(111). Our approach is based on our explicit solvation model for metal surfaces and the repetition of FEP calculations to estimate confidence intervals. Results indicate that aqueous phase effects on the free energies of elementary processes can be determined with 95% confidence intervals from limited configuration space sampling and the fixed charge approximation used in the QM/MM-FEP methodology of smaller 0.1 eV. Next, we computed the initial O–H, C–H, and C–OH bond cleavages in ethylene glycol over Pt(111) in liquid water utilizing two different metal–water interaction potentials. Our calculations predict that aqueous phase effects are small (<0.1 eV) for the C–H bond cleavage and the activation barrier of the C–OH bond cleavage. In contrast, solvation effects are large (>0.35 eV) for the O–H bond cleavage and the reaction free energy of the C–OH bond scission. While the choice of a different Pt–water force field can lead to differences in predicted solvation effects of up to 0.2 eV, the differences are usually smaller (<0.1 eV), and the trends are always the same. In contrast, implicit solvation methods appear to currently not be able to reliably describe solvation effects originating from hydrogen bonding for metal surfaces even qualitatively.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2017

Effects of scale of movement, detection probability, and true population density on common methods of estimating population density

Knowledge of population density is necessary for effective management and conservation of wildlife, yet rarely are estimators compared in their robustness to effects of ecological and observational processes, which can greatly influence accuracy and precision of density estimates. For this study, we simulate biological and observational processes using empirical data to assess effects of animal scale of movement, true population density, and probability of detection on common density estimators. We also apply common data collection and analytical techniques in the field and evaluate their ability to estimate density of a globally widespread species. We find that animal scale of movement had the greatest impact on accuracy of estimators, although all estimators suffered reduced performance when detection probability was low, and we provide recommendations as to when each field and analytical technique is most appropriately employed. The large influence of scale of movement on estimator accuracy emphasizes the importance of effective post-hoc calculation of area sampled or use of methods that implicitly account for spatial variation. In particular, scale of movement impacted estimators substantially, such that area covered and spacing of detectors (e.g. cameras, traps, etc.) must reflect movement characteristics of the focal species to reduce bias in estimates of movement and thus density.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Ab initio molecular dynamics free energy study of enhanced copper (II) dimerization on mineral surfaces

Understanding the adsorption of isolated metal cations from water on to mineral surfaces is critical for toxic waste retention and cleanup in the environment. Heterogeneous nucleation of metal oxyhydroxides and other minerals on material surfaces is key to crystal growth and dissolution. The link connecting these two areas, namely cation dimerization and polymerization, is far less understood. In this work we apply ab initio molecular dynamics calculations to examine the coordination structure of hydroxide-bridged Cu(II) dimers, and the free energy changes associated with Cu(II) dimerization on silica surfaces. The dimer dissociation pathway involves sequential breaking of two Cu 2+ -OH – bonds, yielding three local minima in the free energy profiles associated with 0-2 OH – bridges between the metal cations, and requires the design of a (to our knowledge) novel reaction coordinate for the simulations. Cu(II) adsorbed on silica surfaces are found to exhibit stronger tendency towards dimerization than when residing in water. Cluster-plus-implicit-solvent methods yield incorrect trends if OH – hydration is not correctly depicted. The predicted free energy landscapes are consistent with fast equilibrium times (seconds) among adsorbed structures, and favor Cu 2+ dimer formation on silica surfaces over monomer adsorption.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2022

Light-front wavefunctions of mesons by design

Abstract We develop a mechanism to build the light-front wavefunctions (LFWFs) of meson bound states on a small-sized basis function representation. Unlike in a standard Hamiltonian formalism, the Hamiltonian in this method is implicit, and the information of the system is carried directly by the functional form and adjustable parameters of the LFWFs. In this work, we model the LFWFs for four charmonium states, $$\eta _c$$ η c , $$J/\psi $$ J / ψ , $$\psi '$$ ψ ′ , and $$\psi (3770)$$ ψ ( 3770 ) as superpositions of orthonormal basis functions. We choose the basis functions as eigenfunctions of an effective Hamiltonian, which has a longitudinal confining potential in addition to the transverse confining potential from light-front holographic QCD. We determine the basis function parameters and superposition coefficients by employing both guidance from the nonrelativistic description of the meson states and the experimental measurements of the meson decay widths. With the obtained wavefunctions, we study the features of those meson states, including charge radii and parton distribution functions. We use the $$J/\psi $$ J / ψ LFWF to calculate the meson production in diffractive deep inelastic scattering and ultra-peripheral heavy-ion collisions, and the $$\eta _c$$ η c LFWF to calculate its diphoton transition form factor. Both results show good agreement with experiments. The obtained LFWFs have simple-functional forms and can be readily used to predict additional experimental observables.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2016

Implicit SPH v. 1.0

ISPH code is developed to solve multi-physics meso-scale flow problems using implicit SPH method. In particular, the code can provides solutions for incompressible, multi phase flow and electro-kinetic flows.

Kim, Kyungjoo↗
DOE OSTI2020

Interpenetrating Plasma Simulations

This project investigated multifluid models for simulating interpenetrating plasmas. These models solve the Euler equations for each plasma stream along with an appropriate model for electron dynamics. The project developed a novel code, Euclid, that simulates these models using high-order conservative spatial discretization methods and explicit and semi-implicit time integration methods. Euclid was used to solve several multifluid test cases representative of plasma dynamics in high-energy density physics experiments. Kinetic simulations of interpenetrating flows using the LOKI code revealed novel physical effects of the ion-ion streaming instability. A new multi-flow collision operator was developed for the LOKI code. A simple model of the ion-ion streaming instability was also developed. Several presentations were given on the project results; three journal articles have been published, one has been submitted, and two are planned.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2022

Exponential integrators for non-linear diffusion

The goal of this project is to compare the performance of exponential time integrators with traditional methods such as diagonally implicit Runge-Kutta methods in the context of solving the system of reduced magnetohydrodynamics (RMHD). In this report, we present initial results of a proof of concept study that shows that exponential integrators can be an efficient alternative to traditional integration schemes.

42 ENGINEERING↗
DOE OSTI2025

Planar Collisionless Shock Simulations with the Semi-implicit Particle-in-cell Model FLEKS

This study investigates the applicability of the semi-implicit particle-in-cell code FLexible Exascale Kinetic Simulator (FLEKS) to heliospheric shock simulations. We examine one- and two-dimensional local planar shock simulations, initialized using MHD states with upstream conditions representative of plasmas in the hypersonic, β ∼ 1 regime, for both quasi-perpendicular and quasi-parallel configurations. The refined algorithm in FLEKS proves robust, enabling accurate shock simulations with a grid resolution on the order of the electron inertial length d e . Our simulations successfully capture key shock features, including shock structures (foot, ramp, overshoot, and undershoot), upstream and downstream waves (fast magnetosonic, whistler, Alfvén ion-cyclotron, and mirror modes), and non-Maxwellian particle distributions. Crucially, we find that at least two spatial dimensions are critical for accurately reproducing downstream-wave physics in quasi-perpendicular shocks and capturing the complex dynamics of quasi-parallel shocks, including surface rippling, shocklets, short, large-amplitude magnetic structures, magnetic reconnection, and jets. Furthermore, our parameter studies demonstrate the impact of mass ratio and grid resolution on shock physics. This work provides valuable guidance for selecting appropriate physical and numerical parameters for shock simulations using a semi-implicit PIC method, paving the way for incorporating kinetic shock processes into large-scale collisionless plasma simulations with the MHD-AEPIC model.

plasma astrophysics↗
DOE OSTI2022

Impact of the numerical solution approach of a plant hydrodynamic model (v0.1) on vegetation dynamics

Abstract. Numerous plant hydrodynamic models have started to be implemented in vegetation dynamics models, reflecting the central role of plant hydraulic traits in driving water, energy, and carbon cycles, as well as plant adaptation to climate change. Different numerical approximations of the governing equations of the hydrodynamic models have been documented, but the numerical accuracy of these models and its subsequent effects on the simulated vegetation function and dynamics have rarely been evaluated. Using different numerical solution methods (including implicit and explicit approaches) and vertical discrete grid resolutions, we evaluated the numerical performance of a plant hydrodynamic module in the Functionally Assembled Terrestrial Ecosystem Simulator (FATES-HYDRO version 0.1) based on single-point and global simulations. Our simulation results showed that when near-surface vertical grid spacing is coarsened (grid size >10 cm), the model significantly overestimates aboveground biomass (AGB) in most of the temperate forest locations and underestimates AGB in the boreal forest locations, as compared to a simulation with finer vertical grid spacing. Grid coarsening has a small effect on AGB in the tropical zones of Asia and South America. In particular, coarse surface grid resolution should not be used when there are large and prolonged water content differences among soil layers at depths due to long dry-season duration and/or well-drained soil or when soil evaporation is a dominant fraction of evapotranspiration. Similarly, coarse surface grid resolution should not be used when there is lithologic discontinuity along the soil depth. This information is useful for uncertainty quantification, sensitivity analysis, or the training of surrogate models to design the simulations when computational cost limits the use of ensemble simulations.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

A Hybrid Gradient Method to Designing Bayesian Experiments for Implicit Models

Bayesian experimental design (BED) aims at designing an experiment to maximize the information gathering from the collected data. The optimal design is usually achieved by maximizing the mutual information (MI) between the data and the model parameters. When the analytical expression of the MI is unavailable, e.g.,having implicit models with intractable data distributions, a neural network-based lower bound of the MI was recently proposed and a gradient ascent method was used to maximize the lower bound [1]. However, the approach in [1] requires a pathwise sampling path to compute the gradient of the MI lower bound with respect to the design variables, and such a pathwise sampling path is usually inaccessible for implicit models. In this work, we propose a hybrid gradient approach that leverages recent advances in variational MI estimator and evolution strategies (ES)combined with black-box stochastic gradient ascent (SGA) to maximize the MI lower bound. This allows the design process to be achieved through a unified scalable procedure for implicit models without sampling path gradients. Several experiments demonstrate that our approach significantly improves the scalability of BED for implicit models in high-dimensional design space.

Zhang, Jiaxin↗
DOE OSTI2017

Stage-parallel fully implicit Runge–Kutta solvers for discontinuous Galerkin fluid simulations

In this paper, we develop new techniques for solving the large, coupled linear systems that arise from fully implicit Runge–Kutta methods. This method makes use of the iterative preconditioned GMRES algorithm for solving the linear systems, which has seen success for fluid flow problems and discontinuous Galerkin discretizations. By transforming the resulting linear system of equations, one can obtain a method which is much less computationally expensive than the untransformed formulation, and which compares competitively with other time-integration schemes, such as diagonally implicit Runge–Kutta (DIRK) methods. We develop and test several ILU-based preconditioners effective for these large systems. We additionally employ a parallel-in-time strategy to compute the Runge–Kutta stages simultaneously. Numerical experiments are performed on the Navier–Stokes equations using Euler vortex and 2D and 3D NACA airfoil test cases in serial and in parallel settings. In conclusion, the fully implicit Radau IIA Runge–Kutta methods compare favorably with equal-order DIRK methods in terms of accuracy, number of GMRES iterations, number of matrix–vector multiplications, and wall-clock time, for a wide range of time steps.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2018

Recursive integral method with Cayley transformation

Summary The recently developed RIM (recursive integral method) finds eigenvalues in a region of the complex plane. It computes an indicator to test if the region contains eigenvalues using an approximate spectral projection. If the indicator shows that the region contains eigenvalues, it is subdivided into smaller regions, which are then recursively tested and subdivided until any eigenvalues are isolated to a specified precision. We propose an enhancement to RIM that uses Cayley transformations and Arnoldi's method to greatly decrease the number of factorizations required to solve the linear systems that arise from a discretized contour integral to compute the indicator, which substantially reduces the computational cost. We demonstrate the efficacy of our method with numerical examples and compare with the implicitly restarted Arnoldi method, as implemented in eigs in MATLAB.

Huang, R.↗
DOE OSTI2016

Investigation on numerical method of one-dimensional drift flux model for boiling two-phase flow

A numerical method for the solution of one-dimension drift-flux model has been developed. Correlations for heat and mass transfer and kinematic constitutive equation were used to close the set of the partial differential equations. The finite volume method based on the staggered grid and fully implicit backward Euler method were applied to discretize the spatial and time differential items, respectively. The discretization equations were solved iteratively in a same manner as in SIMPLE method for a single-phase flow. The verification and validation of the numerical method and closure model for one-dimension drift-flux model have been performed by comparing the code solution with the experimental data. Furthermore, the axial distribution of void fraction and pressure also have been investigated under different heated case. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2017

Extreme scale unstructured adaptive CFD for aerodynamic flow control

Understanding the flow of fluid, either liquid or gas, through and around solid bodies has challenged man since the dawn of scientific inquiry. Many of the great minds of science and mathematics have progressively built up a hierarchy of fluid models since fluid flow impacts our lives in so many fundamental ways - from the early days of flow of water in viaducts to cities, to today's flight of planes. This chapter is concerned with the computational modeling of turbulent flow around aerodynamic bodies such as planes and wind turbines. In this case, viscous effects near the solid bodies create very thin boundary layers that yield highly anisotropic (gradients normal to the surface may be 10 6 larger than gradients along the surface) solutions to the governing non-linear partial differential equations (PDE); the Navier-Stokes equations. Furthermore, turbulent flows develop extremely broad ranges of length and time scales motivating the use of discretization methods capable of employing adaptivity and implicit time integration. The combination of these features - non-linear, anisotropy, adaptivity, and implicit - dramatically raise the complexity of the discretization, posing large challenges to efficient scalable parallel implementation. However, through careful design, the more complex algorithms can provide great reductions in computational cost relative to simpler methods (e.g., Cartesian grids with explicit time integration) that are easier to mate efficiently to hardware. In this chapter, we not only describe our approach but we also address the fact that while complex algorithms may never be as efficient flop-for-flop as simple methods, in the important measure of science-per-core-hour, they can still win big by making complex features like adaptivity and implicit methods as efficient and scalable as possible.

42 ENGINEERING↗