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DOE OSTI2020

Genotype-Specific Neutralization of Norovirus Is Mediated by Antibodies Against the Protruding Domain of the Major Capsid Protein

Abstract Human noroviruses are the most common viral agents of acute gastroenteritis. Recently, human intestinal enteroids were shown to be permissive for norovirus infection. We tested their suitability as a system to study norovirus neutralization. Hyperimmune sera raised against virus-like particles (VLPs) representing different genotypes showed highly specific neutralization activity against GII.4 and GII.6 noroviruses. Carbohydrate blocking assays and neutralization exhibited similar patterns in antibody responses. Notably, sera produced against chimeric VLPs that presented swapped structural shell and protruding (P) domains, from different genotypes showed that neutralization is primarily mediated by antibodies mapping to the P domain of the norovirus capsid protein. This study provides empirical information on the antigenic differences among genotypes as measured by neutralization, which could guide vaccine design.

Ford-Siltz, Lauren A.↗

DOE OSTI2020

Multiphase outflows in post-starburst E+A galaxies - II. A direct connection between the neutral and ionized outflow phases

ABSTRACT Post-starburst E+A galaxies are systems that hosted a powerful starburst that was quenched abruptly. Simulations suggest that these systems provide the missing link between major merger ULIRGs and red and dead ellipticals, where AGN feedback is responsible for the expulsion or destruction of the molecular gas. However, many details remain unresolved and little is known about AGN-driven winds in this short-lived phase. We present spatially resolved IFU spectroscopy with MUSE/VLT of SDSS J124754.95-033738.6, a post-starburst E+A galaxy with a recent starburst that started 70 Myr ago and ended 30 Myr ago, with a peak SFR of $\sim 150\, \mathrm{M_{\odot }\,yr^{ -1}}$. We detect disturbed gas throughout the entire field of view, suggesting triggering by a minor merger. We detect fast-moving multiphased gas clouds, embedded in a double-cone face-on outflow, which are traced by ionized emission lines and neutral NaID emission and absorption lines. We find remarkable similarities between the kinematics, spatial extents, and line luminosities of the ionized and neutral gas phases, and propose a model in which they are part of the same outflowing clouds, which are exposed to both stellar and AGN radiation. Our photoionization model provides consistent ionized line ratios, NaID absorption optical depths and EWs, and dust reddening. Using the model, we estimate, for the first time, the neutral-to-ionized gas mass ratio (about 20), the sodium neutral fraction, and the size of the outflowing clouds. This is one of the best ever observed direct connections between the neutral and ionized outflow phases in AGN.

Baron, Dalya↗

DOE OSTI2023

Can we observe the ion-neutral drift velocity in prestellar cores?

Given the low-ionization fraction of molecular clouds, ambipolar diffusion is thought to be an integral process in star formation. However, chemical and radiative-transfer effects, observational challenges, and the fact that the ion-neutral drift velocity is inherently very small render a definite detection of ambipolar diffusion extremely non-trivial. Here, we study the ion-neutral drift velocity in a suite of chemodynamical, non-ideal magnetohydrodynamic (MHD), two-dimensional axisymmetric simulations of prestellar cores where we alter the temperature, cosmic-ray ionization rate, visual extinction, mass-to-flux ratio, and chemical evolution. Subsequently, we perform a number of non-local thermodynamic equilibrium (non-LTE) radiative-transfer calculations considering various idealized and non-idealized scenarios in order to assess which factor (chemistry, radiative transfer, and/or observational difficulties) is the most challenging to overcome in our efforts to detect the ion-neutral drift velocity. We find that temperature has a significant effect in the amplitude of the drift velocity with the coldest modelled cores (T = 6 K) exhibiting drift velocities comparable to the sound speed. Against expectations, we find that in idealized scenarios (where two species are perfectly chemically co-evolving) the drift velocity ‘survives’ radiative-transfer effects and can in principle be observed. However, we find that observational challenges and chemical effects can significantly hinder our view of the ion-neutral drift velocity. Finally, we propose that HCN and HCNH + ⁠, being chemically co-evolving, could be used in future observational studies aiming to measure the ion-neutral drift velocity.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2022

Enhancement of charge-neutral fermionic excitations near the spin-flop transition in the magnetic Kondo material YbIr 3 Si 7

The new Kondo material YbIr 3 Si 7 , similar to other Kondo insulators, has been reported to exhibit charge-neutral fermionic excitations through measurements of specific heat and thermal conductivity at low temperatures. We performed 29 Si-NMR on YbIr 3 Si 7 to investigate the magnetic response of charge-neutral fermions from a microscopic perspective. In low magnetic fields parallel to the c axis, a single NMR peak in the paramagnetic state splits into three peaks below TN. In contrast, only a slight shift of the single NMR peak was observed in high magnetic fields. This spectral change as a function of the c-axis magnetic field is interpreted as a spin-flop transition, at which the magnetic moments oriented along the c axis antiferromagnetic (AFM-I) phase are rotated to the ab plane with a ferromagnetic component along the c-axis (AFM-II phase). In the vicinity of the spin-flop magnetic field H M , the nuclear spin-lattice relaxation rate 1/T 1 was found to be proportional to temperature at low temperatures, indicating the existence of charge-neutral fermions. Furthermore, a peak of 1/T 1 versus the c-axis magnetic field suggests that the charge-neutral fermions in YbIr 3 Si 7 are closely related to its magnetic properties. Our findings shed light on the origin of charge-neutral fermions in insulators.

36 MATERIALS SCIENCE↗

DOE OSTI2023

Novel method for the identification of the production flavor of neutral charmed mesons

We propose a new algorithm for the identification of the production flavor of neutral D mesons in the Belle II experiment. The algorithm exploits the correlation between the flavor of a reconstructed neutral D meson (signal D meson) and the electric charges of particles reconstructed in the rest of the e + e – →$c\bar{c}$ event. These include those originating from the decay of the other charm hadron produced in the event, as well as those possibly produced in association with the signal D meson. We develop the algorithm using simulation and calibrate it in data using decay modes that identify the flavor of the decaying neutral D meson. We use a data sample of e + e – collisions, corresponding to 362 fb –1 of integrated luminosity, collected by Belle II at center-of-mass energies near the Υ(4S) mass. The effective tagging efficiency in data is (47.91±0.07 (stat) ±0.51 (syst)) %, independent of the neutral-D-meson decay mode. This charm flavor tagger will approximately double the effective sample size of many CP-violation and charm-mixing measurements that so far have exclusively relied on neutral D mesons originating from D* ± decays. While developed for Belle II, the basic principles underlying the charm flavor tagger can be used in other experiments, including those at hadron colliders.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2023

Broadly neutralizing antibodies against sarbecoviruses generated by immunization of macaques with an AS03-adjuvanted COVID-19 vaccine

The rapid emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants that evade immunity elicited by vaccination has placed an imperative on the development of countermeasures that provide broad protection against SARS-CoV-2 and related sarbecoviruses. Here, we identified extremely potent monoclonal antibodies (mAbs) that neutralized multiple sarbecoviruses from macaques vaccinated with AS03-adjuvanted monovalent subunit vaccines. Longitudinal analysis revealed progressive accumulation of somatic mutation in the immunoglobulin genes of antigen-specific memory B cells (MBCs) for at least 1 year after primary vaccination. Antibodies generated from these antigen-specific MBCs at 5 to 12 months after vaccination displayed greater potency and breadth relative to those identified at 1.4 months. Fifteen of the 338 (about 4.4%) antibodies isolated at 1.4 to 6 months after the primary vaccination showed potency against SARS-CoV-2 BA.1, despite the absence of serum BA.1 neutralization. 25F9 and 20A7 neutralized authentic clade 1 sarbecoviruses (SARS-CoV, WIV-1, SHC014, SARS-CoV-2 D614G, BA.1, and Pangolin-GD) and vesicular stomatitis virus–pseudotyped clade 3 sarbecoviruses (BtKY72 and PRD-0038). 20A7 and 27A12 showed potent neutralization against all SARS-CoV-2 variants and multiple Omicron sublineages, including BA.1, BA.2, BA.3, BA.4/5, BQ.1, BQ.1.1, and XBB. Crystallography studies revealed the molecular basis of broad and potent neutralization through targeting conserved sites within the RBD. Prophylactic protection of 25F9, 20A7, and 27A12 was confirmed in mice, and administration of 25F9 particularly provided complete protection against SARS-CoV-2, BA.1, SARS-CoV, and SHC014 challenge. These data underscore the extremely potent and broad activity of these mAbs against sarbecoviruses.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2024

Differential laboratory passaging of SARS-CoV-2 viral stocks impacts the in vitro assessment of neutralizing antibodies

Viral populations in natural infections can have a high degree of sequence diversity, which can directly impact immune escape. However, antibody potency is often tested in vitro with a relatively clonal viral populations, such as laboratory virus or pseudotyped virus stocks, which may not accurately represent the genetic diversity of circulating viral genotypes. This can affect the validity of viral phenotype assays, such as antibody neutralization assays. To address this issue, we tested whether recombinant virus carrying SARS-CoV-2 spike (VSV-SARS-CoV-2-S) stocks could be made more genetically diverse by passage, and if a stock passaged under selective pressure was more capable of escaping monoclonal antibody (mAb) neutralization than unpassaged stock or than viral stock passaged without selective pressures. We passaged VSV-SARS-CoV-2-S four times concurrently in three cell lines and then six times with or without polyclonal antiserum selection pressure. All three of the monoclonal antibodies tested neutralized the viral population present in the unpassaged stock. The viral inoculum derived from serial passage without antiserum selection pressure was neutralized by two of the three mAbs. However, the viral inoculum derived from serial passage under antiserum selection pressure escaped neutralization by all three mAbs. Deep sequencing revealed the rapid acquisition of multiple mutations associated with antibody escape in the VSV-SARS-CoV-2-S that had been passaged in the presence of antiserum, including key mutations present in currently circulating Omicron subvariants. These data indicate that viral stock that was generated under polyclonal antiserum selection pressure better reflects the natural environment of the circulating virus and may yield more biologically relevant outcomes in phenotypic assays. Thus, mAb assessment assays that utilize a more genetically diverse, biologically relevant, virus stock may yield data that are relevant for prediction of mAb efficacy and for enhancing biosurveillance.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2021

Structural basis for antibody binding to adenylate cyclase toxin reveals RTX linkers as neutralization-sensitive epitopes

RTX leukotoxins are a diverse family of prokaryotic virulence factors that are secreted by the type 1 secretion system (T1SS) and target leukocytes to subvert host defenses. T1SS substrates all contain a C-terminal RTX domain that mediates recruitment to the T1SS and drives secretion via a Brownian ratchet mechanism. Neutralizing antibodies against the Bordetella pertussis adenylate cyclase toxin, an RTX leukotoxin essential for B . pertussis colonization, have been shown to target the RTX domain and prevent binding to the α M β 2 integrin receptor. Knowledge of the mechanisms by which antibodies bind and neutralize RTX leukotoxins is required to inform structure-based design of bacterial vaccines, however, no structural data are available for antibody binding to any T1SS substrate. Here, we determine the crystal structure of an engineered RTX domain fragment containing the α M β 2 -binding site bound to two neutralizing antibodies. Notably, the receptor-blocking antibodies bind to the linker regions of RTX blocks I–III, suggesting they are key neutralization-sensitive sites within the RTX domain and are likely involved in binding the α M β 2 receptor. As the engineered RTX fragment contained these key epitopes, we assessed its immunogenicity in mice and showed that it elicits similar neutralizing antibody titers to the full RTX domain. The results from these studies will support the development of bacterial vaccines targeting RTX leukotoxins, as well as next-generation B . pertussis vaccines.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

H-Canyon Flowsheet for the Neutralization of Dissolved Fast Critical Assembly (FCA) Fuel

The H-Canyon facility will be dissolving unirradiated stainless-steel clad Fast Critical Assembly (FCA) fuel in HNO3 and neutralizing the resulting solution with 50 wt% NaOH with no recovery operations prior to transfer to the Concentration, Storage, and Transfer Facility (CSTF). There are two types of FCA fuel, including a Pu-Al metal alloy and a mixed U and Pu oxide. H-Canyon anticipates dissolving 16 batches of the metal fuel and two batches of the oxide fuel. Potassium fluoride will be added to the dissolver solution at 0.05 M to promote dissolution. Gadolinium will be added after the dissolution as a thermal neutron poison for criticality control. H-Canyon requested that SRNL evaluate Gd:239Pu equivalent (239PuEq) ratios of 1:1 and 10:1. The neutralization process precipitates metals including actinides, Gd, and cladding components resulting in a slurry. Caustic neutralization is a routine H-Canyon operation, but the FCA dissolver solution will be unique relative to solutions that are typically processed due to the stainless-steel components, high HNO3 concentration of ~8.5 M, and an initial Pu concentration of up to 4 g/L. Previous neutralization studies have been performed for Pu containing solutions but at less than half the initial Pu concentration and much lower initial HNO3 concentrations. Experimental neutralizations targeted a final free hydroxide (OH-) concentration of 0.6 M as this was anticipated to be the final endpoint, but H-Canyon now expects the endpoint to be 1.2 M OH-. The purpose of this study was to characterize the distribution of the actinide, Gd, and cladding components between the precipitate and supernate, determine if the slurry will back up in the header during the transfer to the CSTF, and determine if solids will settle in the pipeline during the transfer.

Mills, Matthew S.↗

DOE OSTI2024

Stakeholder-driven carbon neutral pathways for Thailand and Bangkok: integrated assessment modeling to inform multilevel climate governance

Thailand has established a target of carbon neutrality by 2050. Reaching this goal will require coordination and collaboration between stakeholders spanning sectors and scales, including energy system decision makers, land managers, and city planners. Robust decarbonization scenarios incorporating current plans and targets, additional measures needed, and trade-offs between strategies can help stakeholders make informed decisions in the face of uncertainty. Through iterative engagement with decision makers at the city and national levels, we develop and analyze carbon neutral scenarios for Thailand that incorporate Bangkok’s role using a global integrated assessment model. We find that Thailand can reach carbon neutrality through power sector decarbonization, energy efficiency improvements, widespread electrification, and advanced technologies including carbon capture and storage and hydrogen. Negative emissions technologies will also be needed to offset Thailand and Bangkok’s hardest-to-abate CO 2 emissions. Bangkok, as a major population and economic center, contributes significantly to Thailand’s energy demand and emissions and can therefore play an important role in climate change mitigation. Accordingly, our results underscore the importance of subnational climate action in meeting Thailand’s carbon neutral goal. Our analysis also indicates that without sustained land-based carbon sequestration, much more mitigation effort will be needed in Thailand’s energy sector, including at the subnational scale, to reach carbon neutrality. These insights can help stakeholders identify priorities, consider tradeoffs, and make decisions that will impact Bangkok and Thailand’s long-term climate change mitigation potential. This analysis demonstrates how stakeholder engagement in integrated assessment modeling can facilitate and inform multilevel climate governance.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

DOE OSTI2025

Constraining non-standard neutrino interactions with neutral current events at long-baseline oscillation experiments

We explore, for the first time, neutral-current events at long-baseline experiments to constrain vector and axial-vector neutrino non-standard interactions (NSI) with quarks. We leverage the flavor dependence of NSIs to perform an oscillation analysis in the neutral- current channel. We first introduce a framework to parametrize the effect of NSI on the cross section. Then, as an example, we analyze NOvA neutral-current data which provides significantly improved constraints on the axial-vector NSI parameters $ {\varepsilon}_{\mu \mu}^A $,$ {\varepsilon}_{\tau \tau}^A $ and $ {\varepsilon}_{e\mu}^A $. This is highly complementary to constraints from SNO data, which, differently from long-baseline neutral current data, is not sensitive to isospin conserving NSIs $ {\varepsilon}_u^A $ = $ {\varepsilon}_d^A $. Additionally, we disfavor large values of the diagonal vectorial NSI $ {\varepsilon}_{\mu \mu}^{VV} $ and $ {\varepsilon}_{\tau \tau}^V $ which originate from the LMA-Dark solution. We also highlight the complementarity between NSI searches at oscillation experiments using charged current and neutral current channels.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

NASA NTRS1973

Comments on the paper 'The internal structure of the geomagnetic neutral sheet' by K. Schindler and N. F. Ness

Criticism of Schindler and Ness' (1972) multiple neutral point hypothesis, noting that there are several alternative interpretations of the distribution of magnetic field values observed by Explorer 34. It is shown that it is possible to interpret the tail magnetic field observations of Schindler and Ness without requiring neutral point encounters. On the other hand, if it is assumed that the observed field variations were due to neutral point encounters, there may be a single oscillating neutral point, or there may be multiple neutral points in time or in space.

Russell, C. T.↗

NASA NTRS1973

Neutral and ion-exospheres in the solar wind with applications to Mercury

Construction of a model neutral and ion exosphere for a planet weakly interacting with the solar wind. The model is constructed in general terms and is then specialized to possible neutral and ion exospheres for the planet Mercury. The neutral exosphere model allows for density and temperature variations and for rotation at the exobase. The ion exosphere is produced by ionization of the neutral exosphere in the solar wind, and its density distribution is obtained by solving the continuity equation in the drift approximation. Applying to Mercury a surface temperature distribution inferred from infrared data and a vanishing bound neutral flux at the base, He and He(+) density distributions are found. When the He atmosphere of Mercury is due entirely to the surface bombardment by solar wind He(2+), the resulting He(+) density is found to vary from 0.15 to 0.001 per cu cm over the range from 1.5 to 5 planetocentric radii on the dayside. These densities are found to be detectable by typical solar-wind plasma instruments.

Hartle, R. E.↗

NASA NTRS1975

A study of the interaction of neutral and charged particles

Preliminary experimental data on the number of charged neutral nuclear-active particles were obtained at 200 BeV. The ratio of the number of charged particles to the number of neutral particles was 2.1 + or - 0.3. Nuclear cascade curves in iron and distributions over the portions of energy transferred to neutral pions in lead were obtained for avalanches generated by charged and neutral particles. The characteristics of interactions of the charged neutral particles at the existing experimental errors showed no difference.

Kim, V. M.↗

NASA NTRS1974

The influence of the direction of the geomagnetic dipole on the position of the neutral sheet

An analysis of neutral sheet crossings detected by the NASA-Goddard Space Flight Center magnetometer on the Explorer 34 satellite has shown that the diurnal wobble of the geomagnetic dipole measurably influences the position of the neutral sheet at 30 earth radii. Viewed in the solar-ecliptic coordinate system, the dipole wobble originates from the 11 deg angle between the earth's spin axis and the dipole axis, has a period of 24 hours, and can be resolved into components of motion perpendicular and parallel to the earth-sun line. The perpendicular component exerts a torque on the magnetotail and causes the neutral sheet to pivot about an axis approximately parallel to the solar wind direction. The parallel component encourages the neutral sheet to move above and below the solar-magnetospheric equatorial plane with an amplitude of 1 earth radius. This latter motion is consistent with the neutral sheet's being hinged at a geocentric distance of 5.25 earth radii.

Bowling, S. B.↗

NASA NTRS1978

Wavy nature of the magnetotail neutral sheet

Crossings of the magnetotail neutral sheet are examined with 20-sec averaged magnetic field data from Imp 5 satellite. It is shown that for some multiple neutral sheet crossings, the y-component of the magnetic field reverses its sign between adjacent crossings. This feature can be explained in terms of a wavy profile of the neutral sheet along the dawn-dusk direction, but not in terms of flapping motion or wavy profile of the neutral sheet along the tailward direction. It is suggested that the magnetotail neutral sheet often shows departure from a plane geometry.

Lui, A. T. Y.↗

NASA NTRS1979

Neutralization tests on the SERT II spacecraft

Orbit precession returned the SERT II spacecraft to continuous sunlight in January 1979 for the first time since early 1972, and new experiments were planned and conducted. Neutralization of an ion beam was accomplished by a second neutralizer cathode located 1 meter away. Plasma potential measurements were made of the plasma surrounding the ion beam and connecting the beam to the second neutralizer. When the density of the connecting plasma was increased by turning on the main discharge of a neighboring ion thruster, the neutralization of the ion beam occurred with improved (lower) coupling voltage. These and other tests reported should aid in the future design of spacecraft using electric thruster systems. Data taken indicate that cross neutralization of ion thrusters in a multiple thruster array should occur readily.

Kerslake, W. R.↗

NASA NTRS1982

Feedback stabilization and control of linear neutral systems

The first problem treated here is the realization and stabilization of linear neutral systems with discrete delays. It is shown that any autonomous linear neutral system with discrete delays is zero-state equivalent to an abstract linear system over a local ring of operators. Using the abstract model, the basic existence question for neutral realization is then settled. For general infinite dimensional linear systems, there is no precise analog of the finite dimensional state space isomorphism theorem. Because of this, the notion of spectral minimality must be introduced. For the case of single input-single output systems, realizations are obtained that are both minimal and spectrally minimal. Using the Cruz-Hale theory of stable D-operators, conditions are given that ensure that any poles introduced into the realization are strictly contained in the left half plane and indeed are characterized as characteristic values of the D-operator. The problem of the feedback stabilization of neutral systems is then considered using the abstract model. It is shown that, for neutral systems with commensurable delays and a stable D-operator in the sense of Cruz and Hale, Morses theorem (1976) on pole assignment over a PID implies stabilizability in the reachable case.

Tarn, T. J.↗