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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 163 records · Page 9
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Heavy and light flavor jet quenching in heavy-ion collisions in a perturbative QCD approach

In this work, we study the flavor dependence of jet quenching in heavy-ion collisions. A next-to-leading-order perturbative QCD framework is applied to account for both quark and gluon contributions to light and heavy flavor hadron productions. A linear Boltzmann transport model coupled to hydrodynamic simulation is utilized to study the nuclear modification of heavy and light flavor jets in the dynamically evolving quark-gluon plasma. Within our jet quenching framework, we obtain a nice description of the nuclear modification factors of charged hadrons, D mesons, B mesons and B–decayed D mesons over a wide range of transverse momentum (8-300 GeV). Our result shows that perturbative QCD is sufficient to explain the color, mass and energy dependence of parton energy loss and jet quenching in heavy-ion collisions.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

Non-perturbative BRST symmetry and the spectral structure of the ghost propagator

In BRST-quantised Yang-Mills theory the existence of BRST symmetry imposes significant constraints on the analytic structure of the continuum theory. In particular, the presence of this symmetry in the non-perturbative regime implies that any on-shell state with vanishing norm must have an associated partner state with identical mass, but negative inner product. In this work we demonstrate that for quantum chromodynamics (QCD) this constraint gives rise to an interconnection between the ghost and gluon spectra, and in doing so provides a non-trivial test of whether BRST symmetry is realised non-perturbatively. By analysing infrared lattice data for the minimal Landau gauge ghost propagator in pure SU(3) Yang-Mills theory, and comparing this with previous results for the gluon propagator, we show that this interconnection is violated, and hence conclude that continuum and current lattice formulations of Yang-Mills theory in Landau gauge represent two distinct realisations of the theory.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

Predicting and Understanding Non-Covalent Interactions Using Novel Forms of Symmetry-Adapted Perturbation Theory

Although sometimes derided as “weak” interactions, non-covalent forces play a critical role in ligand binding and crystal packing and in determining the conformational landscape of flexible molecules. Symmetry-adapted perturbation theory (SAPT) provides a framework for accurate ab initio calculation of intermolecular interactions and furnishes a natural decomposition of the interaction energy into physically meaningful components: semiclassical electrostatics (rigorously obtained from monomer charge densities), Pauli or steric repulsion, induction (including both polarization and charge transfer), and dispersion. This decomposition helps to foster deeper understanding of non-covalent interactions and can be used to construct transferable, physics-based force fields. Separability of the SAPT interaction energy also provides the flexibility to construct composite methods, a feature that we exploit to improve the description of dispersion interactions. Furthermore, these are challenging to describe accurately because they arise from nonlocal electron correlation effects that appear for the first time at second order in perturbation theory but are not quantitatively described at that level.

74 ATOMIC AND MOLECULAR PHYSICS↗
DOE OSTI2022

Comprehensive Basis-Set Testing of Extended Symmetry-Adapted Perturbation Theory and Assessment of Mixed-Basis Combinations to Reduce Cost

Hybrid or “extended” symmetry-adapted perturbation theory (XSAPT) replaces traditional SAPT’s treatment of dispersion with better performing alternatives while at the same time extending two-body (dimer) SAPT to a many-body treatment of polarization using a self-consistent charge embedding procedure. The present work presents a systematic study of how XSAPT interaction energies and energy components converge with respect to the choice of Gaussian basis set. Errors can be reduced in a systematic way using correlation-consistent basis sets, with aug-cc-pVTZ results converged within <0.1 kcal/mol. Similar (if slightly less systematic) behavior is obtained using Karlsruhe basis sets at much lower cost, and we introduce new versions with limited augmentation that are even more efficient. Pople-style basis sets, which are more efficient still, often afford good results if a large number of polarization functions are included. The dispersion models used in XSAPT afford much faster basis-set convergence as compared to the perturbative description of dispersion in conventional SAPT, meaning that “compromise” basis sets (such as jun-cc-pVDZ) are no longer required and benchmark-quality results can be obtained using triple-ζ basis sets. The use of diffuse functions proves to be essential, especially for the description of hydrogen bonds. As a result, the “δ(Hartree–Fock)” correction for high-order induction can be performed in double-ζ basis sets without significant loss of accuracy, leading to a mixed-basis approach that offers 4× speedup over the existing (cubic scaling) XSAPT approach.

74 ATOMIC AND MOLECULAR PHYSICS↗
DOE OSTI2022

Quantum Perturbation Theory Using Tensor Cores and a Deep Neural Network

In this work, time-independent quantum response calculations are performed using Tensor cores. This is achieved by mapping density matrix perturbation theory onto the computational structure of a deep neural network. The main computational cost of each deep layer is dominated by tensor contractions, i.e., dense matrix–matrix multiplications, in mixed-precision arithmetics, which achieves close to peak performance. Quantum response calculations are demonstrated and analyzed using self-consistent charge density-functional tight-binding theory as well as coupled-perturbed Hartree–Fock theory. For linear response calculations, a novel parameter-free convergence criterion is presented that is well-suited for numerically noisy low-precision floating point operations and we demonstrate a peak performance of almost 200 Tflops using the Tensor cores of two Nvidia A100 GPUs.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2026

One-Step Relativistic Driven Similarity Renormalization Group Multireference Perturbation Theory

We present an efficient implementation of a one-step relativistic second-order multireference perturbation theory based on the multireference driven similarity renormalization group (MR-DSRG) using the exact two-component (X2C) Hamiltonian, which we denote X2C-DSRG-MRPT2. We show that the X2C-DSRG-MRPT2 method can accurately capture spin–orbit coupling (SOC) effects in the electronic structure of strongly correlated systems containing elements across the periodic table. We further demonstrate that the X2C-DSRG-MRPT2 method, through its variational treatment of SOC effects, can yield spin–orbit splittings with mean absolute percentage errors consistently below 7% with respect to experimental values for systems containing up to sixth row elements. With its modest computational scaling (fourth power in system size for the perturbative step) and high accuracy, X2C-DSRG-MRPT2 provides a promising avenue for the routine treatment of relativistic effects in strongly correlated molecular systems.

Hamiltonians↗
DOE OSTI2022

Root Foraging Alters Global Patterns of Ecosystem Legacy From Climate Perturbations

The response of terrestrial ecosystems to climate perturbations typically persist longer than the timescale of the forcing, a phenomenon broadly referred to as legacy. Understanding the strength of legacy is critical for predicting ecosystem sensitivity to climate extremes and the extent that persistent changes in surface-atmosphere exchange might feedback onto climate. The cause of ecosystem legacy has been associated with myriad factors such as changes in aboveground biomass, however, few studies have tested how changes in the depth distribution of fine roots in response to perturbation might alter an ecosystem's recovery time. We explore this question using an Earth System Model that includes a dynamic root module where vegetation can forage for water and nutrients by altering their root profiles. The global simulations presented here show that in response to water stress events most ecosystems deepen their root profiles. In semi-arid ecosystems, this response expedites recovery (i.e., less legacy) relative to simulations without dynamics roots because access to deeper water pools after the initial event remains favorable. In wetter ecosystems, the development of deeper root profiles slows down the recovery timescale (i.e., more legacy) because the deeper root profile reduces access to nutrients and is thus unfavorable. Here, the simulations show that while the inclusion of dynamic roots might only minimally affect global patterns of Gross Primary Productivity and Evapotranspiration, the shift in root profile alters the timescale of recovery. Studies interested in the sustained response of land surfaces fluxes to climate disturbances should consider models that include dynamic root capability.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Implementation of Sub‐Grid Scale Temperature Perturbations Induced by Non‐Orographic Gravity Waves in WACCM6

Abstract Atmospheric gravity waves can play a significant role on atmospheric chemistry through temperature fluctuations. A recent modeling study introduced a method to implement subgrid‐scale orographic gravity‐wave‐induced temperature perturbations in the Whole Atmosphere Community Climate Model (WACCM). The model with a wave‐induced temperature parameterization was able to reproduce for example, the influence of mountain wave events on atmospheric chemistry, as highlighted in previous literature. Here we extend the subgrid‐scale wave‐induced temperature parameterization to also include non‐orographic gravity waves arising from frontal activity and convection. We explore the impact of these waves on middle atmosphere chemistry, particularly focusing on reactions that are strongly sensitive to temperature. The non‐orographic gravity waves increase the variability of chemical reaction rates, especially in the lower mesosphere. As an example, we show that this, in turn, leads to increases in the daytime ozone variability. To demonstrate another impact, we briefly investigate the role of non‐orographic gravity waves in cirrus cloud formation in this model. Consistent with findings from the previous study focusing on orographic gravity waves, non‐orographic waves also enhance homogeneous nucleation and increase cirrus clouds. The updated method used enables the global chemistry‐climate model to account for both orographic and non‐orographic gravity‐wave‐induced subgrid‐scale dynamical perturbations in a consistent manner.

Yook, Simchan [Department of Earth Atmospheric and↗
DOE OSTI2025

One‐at‐a‐Time Parameter Perturbation Ensemble of the Community Land Model, Version 5.1

Comprehensive land models are subject to significant parametric uncertainty, which can be hard to quantify due to the large number of parameters and high model computational costs. We constructed a large parameter perturbation ensemble (PPE) for the Community Land Model version 5.1 with biogeochemistry configuration (CLM5.1-BGC). We performed more than 2,000 simulations perturbing 211 parameters across six forcing scenarios. This provides an expansive data set, which can be used to identify the most influential parameters on a wide range of output variables globally, by biome, or by plant functional type. We found that parameter effects can exceed scenario effects and that a small number of parameters explains a large fraction of variance across our ensemble. The most important parameters can differ regionally and also based on the forcing scenario. The software infrastructure developed for this experiment has greatly reduced the human and computer time needed for CLM PPEs, which can facilitate routine investigation of parameter sensitivity and uncertainty, as well as automated calibration.

Kennedy, Daniel [NSF National Center for Atmospher↗
DOE OSTI2025

Impact of Turbulence Representation on the Relationship Between Cloud Feedback and Aerosol‐Cloud Interaction in an E3SMv2 Perturbed Parameter Ensemble

Recent studies reveal an anti‐correlation between global cloud feedback (CF) and effective radiative forcing due to aerosol‐cloud interaction (ERFaci) in Earth system models, but the physical mechanisms underlying it remain uncertain. Here we investigate how different turbulence representations contribute to this relationship over the global ocean using an ensemble of Energy Exascale Earth System Model version 2 simulations with perturbed turbulence parameters. The anti‐correlation appears only in the tropical ascent regime. In the Northern Hemisphere midlatitude and high latitude regimes, there is no significant correlation, and in the tropical marine low cloud and Southern Ocean regimes, the correlation is positive. These opposite correlations are primarily driven by opposing CF responses to perturbed parameters. We find that the mean‐state turbulent mixing strength affects both CF and ERFaci, enabling strong correlations in certain regimes. This study highlights the complex linkages between CF and ERFaci through turbulent processes across diverse cloud regimes.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

Overview of the Nephele Perturbed Parameter Ensemble for Aerosol‐Cloud Interactions in E3SMv3

Aerosol-cloud interactions (aci) are the leading source of uncertainty in inferring climate sensitivity from the historical record. Earth system models (ESMs) struggle to represent aci because the processes responsible for these phenomena occur at much finer time and space scales than can be resolved by any ESM. Observational constraints provide key benchmarks to test ESMs, but cannot be used alone to fully understand aci processes except in very specific cases where causality is controlled; some degree of modeling is required to infer aci and estimate radiative forcing. Here, we generate and characterize a perturbed parameter ensemble (PPE) in version 3 of the Energy Exascale ESM (E3SMv3). We perturb 25 parameters that govern aci processes over 250 members and integrate the model over present-day and preindustrial aerosol emissions. We find that the process representation in E3SMv3 is flexible and can generate global-mean effective radiative forcings due to aci (ERFaci) ranging from −3.0 to +0.9 W m −2 . The positive ERFaci values simulated by a portion of the PPE are implausible and result from parameter combinations that produce unrealistic top-of-atmosphere energy fluxes. While global-mean cloud droplet number concentration always increases in response to anthropogenic aerosol, cloud liquid water path can both increase and decrease, suggesting that precipitation suppression is not the only aerosol-cloud adjustment represented by E3SMv3. Analysis of which processes control liquid cloud adjustment in the PPE points toward stratiform precipitation processes and aerosol activation, which is consistent with many previous ESMs, as well as the new two-moment convective cloud microphysics in E3SMv3.

Nugent, Jacqueline M. [Univ. of Wyoming, Laramie, ↗
DOE OSTI2026

Contrasting Parametric Sensitivities in Two Global Vegetation Models Using Parameter Perturbation Ensembles

Uncertainty in land model projections remains high and the roles of parametric and structural uncertainty are difficult to disentangle. To compare parametric sensitivity across model structures we present two parameter perturbation ensembles using the Community Land Model (CLM) operating in satellite phenology mode. The ensembles contrast two vegetation modules: (a) the default CLM vegetation module and (b) the Functionally Assembled Terrestrial Ecosystem Simulator (CLM-FATES). We perturbed over 300 parameters and quantified their effects on biophysical fluxes globally and across biomes. Most parameters have minimal impact on biophysical fluxes, with only a few substantially influencing results. While both models exhibit similar parameter sensitivity for some fluxes, CLM-FATES shows larger spread in gross primary productivity (GPP), driven by strong sensitivity to carboxylation rate. CLM-FATES also shows a weaker GPP response to soil hydrology parameters and exhibits higher water use efficiency (WUE). Cross-model comparisons reveal similar sensitivities for some parameters (e.g., leaf dimension) but divergent responses to others (e.g., stomatal intercept), highlighting underlying structural differences. Differences in WUE and sensitivity to hydrology and stomatal conductance parameters underscore how model structure fundamentally alters parametric sensitivity. The data sets generated from these ensembles can be used to identify influential parameters and guide future calibration efforts.

Foster, A. C. [NSF National Center for Atmospheric↗
DOE OSTI2021

Comprehensive characterization of protein–protein interactions perturbed by disease mutations

Technological and computational advances in genomics and interactomics have made it possible to identify how disease mutations perturb protein–protein interaction (PPI) networks within human cells. Here, we show that disease-associated germline variants are significantly enriched in sequences encoding PPI interfaces compared to variants identified in healthy participants from the projects 1000 Genomes and ExAC. Somatic missense mutations are also significantly enriched in PPI interfaces compared to noninterfaces in 10,861 tumor exomes. We computationally identified 470 putative oncoPPIs in a pan-cancer analysis and demonstrate that oncoPPIs are highly correlated with patient survival and drug resistance/sensitivity. Further, we experimentally validate the network effects of 13 oncoPPIs using a systematic binary interaction assay, and also demonstrate the functional consequences of two of these on tumor cell growth. In summary, this human interactome network framework provides a powerful tool for prioritization of alleles with PPI-perturbing mutations to inform pathobiological mechanism- and genotype-based therapeutic discovery.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Thermal perturbation of NMR properties in small polar and non-polar molecules

Water is an important constituent in an abundant number of chemical systems; however, its presence complicates the analysis of in situ 1 H MAS NMR investigations due to water’s ease of solidification and vaporization, the large changes in mobility, affinity for hydrogen bonding interactions, etc., that are reflected by dramatic changes in temperature-dependent chemical shielding. To understand the signatures of water and other small molecules in complex environments, in particular how water interacts with the other molecules, in this work the thermally-perturbed NMR properties of water are investigated in detail by in situ MAS NMR. Our results substantially extend the previously published temperature-dependent 1 H and 17 O chemical shifts, linewidths, and spin-lattice relaxation times over a much wider range of temperatures and with significantly enhanced thermal resolution. The following major results are obtained: Hydrogen bonding is clearly shown to weaken at elevated temperatures in both 1 H and 17 O spectra, showing an increase in chemical shielding. At low temperatures, tetrahedral domains of H-bonding networks are evidenced and the observation of solid ice is made under in situ MAS conditions. The 1 H chemical shift properties in other small polar and non-polar molecules have also been described over a range of temperatures, showing the dramatic effect hydrogen bonding perturbation. Gas phase species are described where chemical exchange between gas and liquid phases plays an important role on the observed NMR shifts. The results disclosed herein lay the foundation for a clearer interpretation of complex systems during the increasingly popular in situ NMR characterization at elevated temperatures and pressures for studying chemical systems containing water molecules.

17O NMR↗
DOE OSTI2021

Potentiating antibiotic efficacy via perturbation of non-essential gene expression

Proliferation of multidrug-resistant (MDR) bacteria poses a threat to human health, requiring new strategies. Here we propose using fitness neutral gene expression perturbations to potentiate antibiotics. We systematically explored 270 gene knockout-antibiotic combinations in Escherichia coli, identifying 90 synergistic interactions. Identified gene targets were subsequently tested for antibiotic synergy on the transcriptomic level via multiplexed CRISPR-dCas9 and showed successful sensitization of E. coli without a separate fitness cost. These fitness neutral gene perturbations worked as co-therapies in reducing a Salmonella enterica intracellular infection in HeLa. Finally, these results informed the design of four antisense peptide nucleic acid (PNA) co-therapies, csgD, fnr, recA and acrA, against four MDR, clinically isolated bacteria. PNA combined with sub-minimal inhibitory concentrations of trimethoprim against two isolates of Klebsiella pneumoniae and E. coli showed three cases of re-sensitization with minimal fitness impacts. Our results highlight a promising approach for extending the utility of current antibiotics.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2020

Analytical model of plasma response to external magnetic perturbation in absence of no-slip condition

Recent simulation and experimental results suggest that the magnetic island and flow on a resonant surface often do not satisfy the “no-slip” condition in the steady state. A new theoretical model on a nonlinear plasma response to external magnetic perturbation in the absence of a no-slip condition is proposed. The model is composed of the equations for the evolution of both the width and phase of the magnetic island due to forced reconnection driven by the external magnetic perturbation, and the force-balance equation for the plasma flow. When the island width is much less than the resistive layer width, the island growth is governed by the linear Hahm–Kulsrud–Taylor solution in the presence of time-dependent plasma flow. In the other regime when the island width is much larger than the resistive layer width, the evolution of both the island width and phase can be described using the Rutherford theory. The island solution is used to construct the quasilinear electromagnetic force, which, together with the viscous one, contributes to the nonlinear variation in plasma flow. The no-slip condition assumed in the conventional error field theory is not imposed here, where the island oscillation frequency depends on but does not necessarily equal to the plasma flow frequency at the rational surface.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2020

Molecular polarizabilities as fingerprints of perturbations to water by ions and confinement

Perturbations to water, both by ions and confining media, have been the focus of numerous experimental and theoretical studies. Yet, several open questions remain, including the extent to which such perturbations modify the structural and dielectric properties of the liquid. Here, we present a first-principles molecular dynamics study of alkali cations in water (Li + , Na + , and K + ) as well as of water and LiCl and KCl solutions under confinement within carbon nanotubes (CNTs) of small diameter (1.1-1.5 nm). Our simulations support the view that the water structure is only modified locally in the presence of cations. We found that molecular polarizabilities are fingerprints of hydrogen bonding modifications, which occur at most up to the second solvation shell for all cations in bulk water. Under confinement, we found that the overall value of the molecular polarizability of water molecules near the surface is determined by the balance of two effects, which are quantitatively different in CNTs of different radii: the presence of broken hydrogen bonds at the surface leads to a decrease in the polarizabilities of water molecules, while the interaction with the CNT enhances polarizabilities. Interestingly, the reduction in dipole moments of interfacial water molecules under confinement is instead driven only by changes in the water structure and not by interfacial interactions. As expected, confinement effects on water molecular polarizabilities and dipole moments are more pronounced in the case of the 1.1 nm CNT.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2020

Effect of magnetic perturbations on turbulence-flow dynamics at the L-H transition on DIII-D

Detailed 2D turbulence measurements from the DIII-D tokamak provide an explanation for how resonant magnetic perturbations (RMPs) raise the L-H power threshold P LH [P. Gohil et al. , Nucl. Fusion 51 , 103020 (2011)] in ITER-relevant, low rotation, ITER-similar-shape plasmas with favorable ion ∇ B direction. RMPs simultaneously raise the turbulence decorrelation rate Δ ω D and reduce the flow shear rate ω shear in the stationary L-mode state preceding the L-H transition, thereby disrupting the turbulence shear suppression mechanism. RMPs also reduce the Reynolds stress drive for poloidal flow, contributing to the reduction of ω shear . On the ~100 μ s timescale of the L-H transition, RMPs reduce Reynolds-stress-driven energy transfer from turbulence to flows by an order of magnitude, challenging the energy depletion theory for the L-H trigger mechanism. In contrast, non-resonant magnetic perturbations, which do not significantly affect P LH , do not affect Δ ω D and only slightly reduce ω shear and Reynolds-stress-driven energy transfer.<

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗