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DOE OSTI2024

Metabolic model predictions enable targeted microbiome manipulation through precision prebiotics

While numerous health-beneficial interactions between host and microbiota have been identified, there is still a lack of targeted approaches for modulating these interactions. Thus, we here identify precision prebiotics that specifically modulate the abundance of a microbiome member species of interest. In the first step, we show that defining precision prebiotics by compounds that are only taken up by the target species but no other species in a community is usually not possible due to overlapping metabolic niches. Subsequently, we use metabolic modeling to identify precision prebiotics for a two-member Caenorhabditis elegans microbiome community comprising the immune-protective target species Pseudomonas lurida MYb11 and the persistent colonizer Ochrobactrum vermis MYb71. We experimentally confirm four of the predicted precision prebiotics, L-serine, L-threonine, D-mannitol, and γ-aminobutyric acid, to specifically increase the abundance of MYb11. L-serine was further assessed in vivo, leading to an increase in MYb11 abundance also in the worm host. Overall, our findings demonstrate that metabolic modeling is an effective tool for the design of precision prebiotics as an important cornerstone for future microbiome-targeted therapies.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

APNN-TC: Accelerating Arbitrary Precision Neural Networks on Ampere GPU Tensor Cores

Over the years, accelerating neural networks with quantization has been widely studied. Unfortunately, prior efforts with diverse precisions (e.g., 1-bit weights and 2-bit activations) are usually restricted by limited precision support on GPUs (e.g., int1 and int4). To break such restrictions, we introduce the first Arbitrary Precision Neural Network framework (APNN-TC) to fully exploit quantization benefits on Ampere GPU Tensor Cores. Specifically, APNN-TC first incorporates a novel emulation algorithm to support arbitrary short bit-width computation with int1 compute primitives and XOR/AND Boolean operations. Second, APNN-TC integrates arbitrary precision layer designs to efficiently map our emulation algorithm to Tensor Cores with novel batching strategies and specialized memory organization. Third, APNN-TC embodies a novel arbitrary precision NN design to minimize memory access across layers and further improve performance. Extensive evaluations show that APNN-TC can achieve significant speedup over CUTLASS kernels and various NN models, such as ResNet and VGG.

Feng, Boyuan↗

DOE OSTI2015

Precision Higgs Boson Physics and Implications for Beyond the Standard Model Physics Theories

The discovery of the Higgs boson is one of science's most impressive recent achievements. We have taken a leap forward in understanding what is at the heart of elementary particle mass generation. We now have a significant opportunity to develop even deeper understanding of how the fundamental laws of nature are constructed. As such, we need intense focus from the scientific community to put this discovery in its proper context, to realign and narrow our understanding of viable theory based on this positive discovery, and to detail the implications the discovery has for theories that attempt to answer questions beyond what the Standard Model can explain. This project's first main object is to develop a state-of-the-art analysis of precision Higgs boson physics. This is to be done in the tradition of the electroweak precision measurements of the LEP/SLC era. Indeed, the electroweak precision studies of the past are necessary inputs to the full precision Higgs program. Calculations will be presented to the community of Higgs boson observables that detail just how well various couplings of the Higgs boson can be measured, and more. These will be carried out using state-of-the-art theory computations coupled with the new experimental results coming in from the LHC. The project's second main objective is to utilize the results obtained from LHC Higgs boson experiments and the precision analysis, along with the direct search studies at LHC, and discern viable theories of physics beyond the Standard Model that unify physics to a deeper level. Studies will be performed on supersymmetric theories, theories of extra spatial dimensions (and related theories, such as compositeness), and theories that contain hidden sector states uniquely accessible to the Higgs boson. In addition, if data becomes incompatible with the Standard Model's low-energy effective lagrangian, new physics theories will be developed that explain the anomaly and put it into a more unified framework beyond the Standard Model.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2015

Precision Spectrophotometric Calibration System for Dark Energy Instruments

For this research we build a precision calibration system and carried out measurements to demonstrate the precision that can be achieved with a high precision spectrometric calibration system. It was shown that the system is capable of providing a complete spectrophotometric calibration at the sub-pixel level. The calibration system uses a fast, high precision monochromator that can quickly and efficiently scan over an instrument’s entire spectral range with a spectral line width of less than 0.01 nm corresponding to a fraction of a pixel on the CCD. The system was extensively evaluated in the laboratory. Our research showed that a complete spectrophotometric calibration standard for spectroscopic survey instruments such as DESI is possible. The monochromator precision and repeatability to a small fraction of the DESI spectrograph LSF was demonstrated with re-initialization on every scan and thermal drift compensation by locking to multiple external line sources. A projector system that mimics telescope aperture for point source at infinity was demonstrated.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2021

Quarter 4 Report: Report on Final Findings and Opportunities for Future Work in the Use of Mixed Precision in Iterative Solvers

The fourth quarter of the project was spent developing an error analysis of the s-step Lanczos and CG algorithms. Our theoretical bounds and numerical experiments show that the numerical behavior of the algorithm can be significantly improved by using extra precision in a small part of the computation related to the computation and application of the Gram matrix. We have published a technical report which includes all steps of the analysis [8]; a shortened version for journal submission is in preparation. We plan to submit this paper in the following weeks. Activities related to this also include a collaboration with Ichitaro Yamazaki on gathering performance results for these new mixed precision s-step Krylov subspace methods using single/double precision on GPUs. Namely, we would like to obtain performance results that show that the performance overhead of using double the working precision in these select computations is minimal. Other activities include attending biweekly xSDK meetings and presenting a pitch talk on this work to the group on February 25, 2021. In the remainder of the document, we summarize our findings on the potential for mixed precision in classical Krylov subspace methods and s-step Krylov subspace methods, as well as key opportunities for future work.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2022

Report of the Frontier for Rare Processes and Precision Measurements

This is the Snowmass 2021 Rare and Precision Frontier Report. The Rare Processes and Precision Measurements Frontier, referred to as the ``Rare and Precision Frontier", or RPF, encompasses searches for extremely rare processes or tiny deviations from the Standard Model (SM) that can be studied with intense sources and high-precision detectors. Our community studies have identified several unique research opportunities that may pin down the scales associated with New Physics (NP) interactions and constrain the couplings of possible new degrees of freedom. Searches for rare flavor transition processes and precision measurements are indispensable probes of flavor and fundamental symmetries, and provide insights into physics that manifests itself at higher energy or through weaker interactions than those directly accessible at high-energy colliders.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2024

Precision Agriculture using Networks of Degradable Analytical Sensors (PANDAS) (Final Technical Report)

Precision agriculture, where sensing of soil, environment and crop conditions are used to precisely synchronize inputs (such as water and fertilizer) to crop needs enhances input use efficiency. This can improve yields and farm profitability while mitigating environmental losses, improving soil carbon content and substantially decreasing energy use for food, feed and fuel crops. Unfortunately, farmers are not yet able to harness the full potential of these management technologies as there is a lack of available management information, and there is therefore a need for sensors that are able to economically measure spatio-temporal variability in soil and crop properties of extremely heterogeneous farm fields precisely at high resolution and at low cost. Real-time, in-situ monitoring of agricultural soil conditions is today carried out using devices that limit the total number of nodes that can be used economically to typically one per acre or less. Higher spatio-temporal resolution sensing would enable more precise agricultural input optimization, with significant benefits to the farmer and the environment. In order to address this issue, this project focused on developing additively manufactured, biodegradable, soil sensors with predicted costs of < $\$$1 per unit to monitor crop inputs (such as water and fertilizer) that predictably, harmlessly degrade away into the soil when no longer needed. These sensor nodes should be easy to place, accurately and continuously monitor soil and crop conditions for an entire season, be read remotely using existing farm equipment, require no ongoing maintenance, not impede farm operations and produce no persistent waste. This approach could enable a >100× increase in information density over current solutions for precision farming of row and other crops, and lead to significant reductions in input energy use and provide increased yield for biofuel crops. Over the course of this project the team at the University of Colorado Boulder, University of California Berkeley, and Colorado State University/Kansas State University investigated a wide range of printable biodegradable electronic materials and sensor designs for determining soil moisture and soil nitrate concentration. These efforts expanded the available materials set for printed soil degradable electronic materials, particularly for conductors, enabling high conductivity and stability. Printed soil moisture and nitrate sensors with suitable sensitivity and selectivity were developed and characterized. Low power and passive wireless electronic systems were integrated with the soil sensors, and testing was carried out with completed sensors to understand their functionality under agricultural conditions. Additionally, other sensor types enabled by the biodegradable materials set created during this project, such as soil microbial activity sensors, were also developed and demonstrated. Project outputs include 10 peer reviewed publications, 4 patent applications, 21 technical presentations, 3 PhD thesis, 10 media reports, 8 additional grants worth over $\$$6M, and the formation of 3 start-up companies.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2026

Precision of ENDF and ENDL Formatted Data Files

The purpose is to ensure that today’s processing codes produced output to meet today’s accuracy needs. Since 1958 ENDL and about 1965 ENDF have each used a text format to define nuclear and atomic data in 11 columns for each data field. When these formats originated this was judged to be adequate to reproduce the accuracy of data at the time and to meet the needs of our applications. When these formats originated the dominant computer language of the day was FORTRAN and if written using an E11.4 format it would include only 4 or 5 digits of precision, e.g., 0.1234E-03 or 1.2345E-02, varying from one computer/system to another the result was not even unique. In the case of ENDF the 4 digit precision was not even adequate to uniquely define the atomic weight of the target, e.g., U238 = 92238 = 0.9224E+5 = WRONG! From its inceptions the ENDF format had a precision problem. One of my first tasks when in 1967 fresh out of graduate school I joined what later became the National Nuclear Data Center (NNDC), was to address this precision problem. By working with ENDF producers and users throughout the U.S. we verified, 1) E or D is not required to define FORTRAN readable numbers, e.g., E+4 or +4 are both o.k. 2) With ENDF energy eV and cross section in barns, 2 digit exponents are almost never required. 3) Since energy is never negative we could use the first of the 11 columns for a digit. Knowing this allowed us to produce ENDF/B-II to 6 or 7 digit precision, e.g., blank, decimal point, 2 or 3 digit exponent, e.g., ^1.23456-12 or ^1.234567-3. Below is an example of the actual ENDF/B-II data released. Note, the date 1970 and the atomic weight, ZA, uniquely defined to 6-digit accuracy, ^9.22350+ 4.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2023

Status of CHIP-TRAP: The Central Michigan University High-Precision Penning Trap

Precise and accurate atomic mass data provide crucial information for applications in a wide range of fields in physics and beyond, including astrophysics, nuclear structure, particle and neutrino physics, fundamental symmetries, chemistry, and metrology. The most precise atomic mass measurements are performed on charged particles confined in a Penning trap. Here, we describe the development, status, and outlook of CHIP-TRAP: the Central Michigan University high-precision Penning trap. CHIP-TRAP aims to perform ultra-high precision (~1 part in 10 11 fractional precision) mass measurements on stable and long-lived isotopes produced with external ion sources and transported to the Penning traps. Along the way, ions of a particular m/q are selected with a multi-reflection time-of-flight mass separator (MR-TOF-MS), with further filtering performed in a cylindrical capture trap before the ions are transported to a pair of hyperbolic measurement traps. In this paper, we report on the design and status of CHIP-TRAP and present results from the commissioning of the ion sources, MR-TOF-MS, and capture trap. We also provide an outlook on the continued development and commissioning of CHIP-TRAP.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2017

High-precision Stellar Limb-darkening in Exoplanetary Transits

Characterization of the atmospheres of transiting exoplanets relies on accurate measurements of the extent of the optically thick area of the planet at multiple wavelengths with a precision ≲100 parts per million (ppm). Next-generation instruments onboard the James Webb Space Telescope (JWST) are expected to achieve ∼10 ppm precision for several tens of targets. A similar precision can be obtained in modeling only if other astrophysical effects, including the stellar limb-darkening, are properly accounted for. In this paper, we explore the limits on precision due to the mathematical formulas currently adopted to approximate the stellar limb-darkening, and due to the use of limb-darkening coefficients obtained either from stellar-atmosphere models or empirically. We recommend the use of a two-coefficient limb-darkening law, named “power-2,” which outperforms other two-coefficient laws adopted in the exoplanet literature in most cases, and particularly for cool stars. Empirical limb-darkening based on two-coefficient formulas can be significantly biased, even if the light-curve residuals are nearly photon-noise limited. We demonstrate an optimal strategy to fitting for the four-coefficient limb-darkening in the visible, using prior information on the exoplanet orbital parameters to break some of the degeneracies that otherwise would prevent the convergence of the fit. Infrared observations taken with the JWST will provide accurate measurements of the exoplanet orbital parameters with unprecedented precision, which can be used as priors to improve the stellar limb-darkening characterization, and therefore the inferred exoplanet parameters, from observations in the visible, such as those taken with Kepler/K2, the JWST, and other past and future instruments.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Performance Verification of the EXtreme PREcision Spectrograph

The EXtreme PREcision Spectrograph (EXPRES) is a new Doppler spectrograph designed to reach a radial-velocity measurement precision sufficient to detect Earth-like exoplanets orbiting nearby, bright stars. We report on extensive laboratory testing and on-sky observations to quantitatively assess the instrumental radial-velocity measurement precision of EXPRES, with a focused discussion of individual terms in the instrument error budget. We find that EXPRES can reach a single-measurement instrument calibration precision better than 10 cm s{sup −1}, not including photon noise from stellar observations. We also report on the performance of the various environmental, mechanical, and optical subsystems of EXPRES, assessing any contributions to radial-velocity error. For atmospheric and telescope related effects, this includes the fast tip-tilt guiding system, atmospheric dispersion compensation, and the chromatic exposure meter. For instrument calibration, this includes the laser fRequency comb (LFC), flat-field light source, CCD detector, and effects in the optical fibers. Modal noise is mitigated to a negligible level via a chaotic fiber agitator, which is especially important for wavelength calibration with the LFC. Regarding detector effects, we empirically assess the impact on the radial-velocity precision due to pixel-position nonuniformities and charge transfer inefficiency (CTI). EXPRES has begun its science survey to discover exoplanets orbiting G-dwarf and K-dwarf stars, in addition to transit spectroscopy and measurements of the Rossiter–McLaughlin effect.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS1972

Extended precision software packages

A description of three extended precision packages is presented along with three small conversion subroutines which can be used in conjunction with the extended precision packages. These extended packages represent software packages written in FORTRAN 4. They contain normalized or unnormalized floating point arithmetic with symmetric rounding and arbitrary mantissa lengths, and normalized floating point interval arithmetic with appropriate rounding. The purpose of an extended precision package is to enable the user to use and manipulate numbers with large decimal places as well as those with small decimal places where precision beyond double precision is required.

Phillips, E. J.↗

NASA NTRS1991

A mathematical basis for the design and design optimization of adaptive trusses in precision control

A mathematical basis for the optimal design of adaptive trusses to be used in supporting precision equipment is provided. The general theory of adaptive structures is introduced, and the global optimization problem of placing a limited number, q, of actuators, so as to maximally achieve precision control and provide prestress, is stated. Two serialized optimization problems, namely, optimal actuator placement for prestress and optimal actuator placement for precision control, are addressed. In the case of prestressing, the computation of a 'desired' prestress is discussed, the interaction between actuators and redundants in conveying the prestress is shown in its mathematical form, and a methodology for arriving at the optimal placement of actuators and additional redundants is discussed. With regard to precision control, an optimal placement scheme (for q actuators) for maximum 'authority' over the precision points is suggested. The results of the two serialized optimization problems are combined to give a suboptimal solution to the global optimization problem. A method for improving this suboptimal actuator placement scheme by iteration is presented.

Das, S. K.↗

NASA NTRS1955

Engine Performance of Precision-forged, Electropolished and Machined Blades of Nimonic 80 and 80A Alloys

An investigation was conducted to determine the effect of electropolishing precision-forged blades and of machining blades from oversize forgings on the engine performance of Nimonic 80 and Nimonic 80A turbine blades. These blades, along with precision-forged blades, were run in a J33-9 turbojet engine. The tests resulted in the following conclusions: (1) Electropolishing of precision-forged blades did not improve engine life relative to the life of nonelectropolished blades. (2) Machining blades from oversize forgings did not improve the engine life of precision-forged blades. (3) The precision-forging and heat-treating practice used in fabricating the blades investigated was such that the surface roughness and oxide penetration was so slight, approximately 0.0005 inch in depth, as to preclude any benefits derived from surface removal by electropolishing or machining.

Sikora, Paul F↗

NASA NTRS1994

Precision orbit determination of altimetric satellites

The ability to determine accurate global sea level variations is important to both detection and understanding of changes in climate patterns. Sea level variability occurs over a wide spectrum of temporal and spatial scales, and precise global measurements are only recently possible with the advent of spaceborne satellite radar altimetry missions. One of the inherent requirements for accurate determination of absolute sea surface topography is that the altimetric satellite orbits be computed with sub-decimeter accuracy within a well defined terrestrial reference frame. SLR tracking in support of precision orbit determination of altimetric satellites is significant. Recent examples are the use of SLR as the primary tracking systems for TOPEX/Poseidon and for ERS-1 precision orbit determination. The current radial orbit accuracy for TOPEX/Poseidon is estimated to be around 3-4 cm, with geographically correlated orbit errors around 2 cm. The significance of the SLR tracking system is its ability to allow altimetric satellites to obtain absolute sea level measurements and thereby provide a link to other altimetry measurement systems for long-term sea level studies. SLR tracking allows the production of precise orbits which are well centered in an accurate terrestrial reference frame. With proper calibration of the radar altimeter, these precise orbits, along with the altimeter measurements, provide long term absolute sea level measurements. The U.S. Navy's Geosat mission is equipped with only Doppler beacons and lacks laser retroreflectors. However, its orbits, and even the Geosat orbits computed using the available full 40-station Tranet tracking network, yield orbits with significant north-south shifts with respect to the IERS terrestrial reference frame. The resulting Geosat sea surface topography will be tilted accordingly, making interpretation of long-term sea level variability studies difficult.

Shum, C. K.↗

NASA NTRS1993

Precision orbit determination using TOPEX/Poseidon TDRSS observations

The TOPEX/Poseidon (T/P) Mission carries a variety of packages to support experimental, precision and operational orbit determination. Included are a GPS transponder, laser retro-reflectors, the French-developed Doppler Orbitography and Radiopositioning Integrated by Satellite (DORIS) Doppler tracking system and a Tracking Data Relay Satellite System (TDRSS) transponder. Presently, TDRSS tracking is used for operational orbit support and is processed with force and measurement modeling consistent with this purpose. However, the low noise and extensive geographical coverage of the TDRSS/TOPEX data allows an assessment of TDRSS Precision Orbit Determination (POD) capabilities by comparison to the T/P precision orbit determination. The Geodynamics (GEODYN) Orbit Determination System is used to process laser and DORIS data to produce the precision orbits for the T/P Project. GEODYN has been modified recently to support the TDRSS observations. TDRSS data analysis can now benefit from the extensive force modeling and reference frame stability needed to meet the orbit determination (OD) goals of the T/P Mission. This analysis has concentrated on the strongest of the TDRSS measurement types, its two-way average range rate. Both the TDRSS and T/P orbits have been assessed in combination with the global satellite laser ranging (SLR) data and by themselves. These results indicate that significant improvement in the TDRSS ephemerides is obtained when the T/P orbit is well determined by SLR, and the TDRSS/TOPEX Doppler link is used to position TDRSS. Meter-level TDRSS positioning uncertainty is achieved using this approach. When the TDRSS orbit location is provided by this approach, the two-way range rate from a single TDRSS (i.e. West only) can provide T/P orbits with sub-meter radial accuracies and two meter RMS total position agreement with SLR defined orbits. These preliminary results indicate improved modeling of the TDRSS measurement through the elimination of heretofore neglected effects like the motion of the T/P TDRSS antenna and improved modeling of ionospheric and atmospheric refractive effects, and the inclusion of TDRSS East in the analysis are warranted. Through these improvements, TDRSS can make a significant contribution to geopotential recovery and precision OD.

Teles, Jerome↗

NASA NTRS1996

Astrophysical Adaptation of Points, the Precision Optical Interferometer in Space

POINTS (Precision Optical INTerferometer in Space) would perform microarcsecond optical astrometric measurements from space, yielding submicroarcsecond astrometric results from the mission. It comprises a pair of independent Michelson stellar interferometers and a laser metrology system that measures both the critical starlight paths and the angle between the baselines. The instrument has two baselines of 2 m, each with two subapertures of 35 cm; by articulating the angle between the baselines, it observes targets separated by 87 to 93 deg. POINTS does global astrometry, i.e., it measures widely separated targets, which yields closure calibration, numerous bright reference stars, and absolute parallax. Simplicity, stability, and the mitigation of systematic error are the central design themes. The instrument has only three moving-part mechanisms, and only one of these must move with sub-milliradian precision; the other two can tolerate a precision of several tenths of a degree. Optical surfaces preceding the beamsplitter or its fold flat are interferometrically critical; on each side of the interferometer, there are only three such. Thus, light loss and wavefront distortion are minimized. POINTS represents a minimalistic design developed ab initio for space. Since it is intended for astrometry, and therefore does not require the u-v-plane coverage of an imaging, instrument, each interferometer need have only two subapertures. The design relies on articulation of the angle between the interferometers and body pointing to select targets; the observations are restricted to the 'instrument plane.' That plane, which is fixed in the pointed instrument, is defined by the sensitive direction for the two interferometers. Thus, there is no need for siderostats and moving delay lines, which would have added many precision mechanisms with rolling and sliding parts that would be required to function throughout the mission. Further, there is no need for a third interferometer, as is required when out-of-plane observations are made. An instrument for astrometry, unlike those for imaging, can be compact and yet scientifically productive. The POINTS instrument is compact and therefore requires no deployment of precision structures, has no low-frequency (i.e., under 100 Hz) vibration modes, and is relatively easy to control thermally. Because of its small size and mass, it is easily and quickly repointed between observations. Further, because of the low mass, it can be economically launched into high Earth orbit which, in conjunction with a solar shield, yields nearly unrestricted sky coverage and a stable thermal environment.

Reasenberg, Robert D.↗

NASA NTRS1996

Effect of Correlated Precision Errors on Uncertainty of a Subsonic Venturi Calibration

An uncertainty analysis performed in conjunction with the calibration of a subsonic venturi for use in a turbine test facility produced some unanticipated results that may have a significant impact in a variety of test situations. Precision uncertainty estimates using the preferred propagation techniques in the applicable American National Standards Institute/American Society of Mechanical Engineers standards were an order of magnitude larger than precision uncertainty estimates calculated directly from a sample of results (discharge coefficient) obtained at the same experimental set point. The differences were attributable to the effect of correlated precision errors, which previously have been considered negligible. An analysis explaining this phenomenon is presented. The article is not meant to document the venturi calibration, but rather to give a real example of results where correlated precision terms are important. The significance of the correlated precision terms could apply to many test situations.

Hudson, S. T.↗