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At least 163 records · Page 9

Initial Application of TSUNAMI for Validation of Advanced Fuel Systems

A number of advanced reactor concepts and accident-tolerant fuels (ATFs) are under development or in the initial stages of deployment and testing in the nuclear power industry. Many of these concepts incorporate chemical or material forms that have not traditionally been used in the nuclear industry and may present challenges for nuclear criticality safety validation. Sensitivity/uncertainty methods are ideally suited for assessing the applicability of existing critical experiments to these potentially challenging applications. This paper presents two case studies recently completed at Oak Ridge National Laboratory (ORNL) which investigated the use of the TSUNAMI tools within the SCALE code system to perform such assessments.Many advanced reactor concepts include uranium enrichments above 5 wt% 235U but below the 20 wt% limit of low-enriched uranium (LEU). This material, referred to as high assay LEU (HA-LEU), poses difficulties across the entire infrastructure of nuclear power, including enrichment, transportation, fabrication, and storage. A potentially representative transportation package was selected to perform a criticality safety validation assessment for UF6 containing HA-LEU. Sensitivity data were generated using the TSUNAMI-3D sequence, and an assessment of the applicability of a range of critical experiments was performed using the TSUNAMI-IP tool. The critical experiments were drawn from the set of available sensitivity data files distributed with the International Criticality Safety Benchmark Evaluation Project (ICSBEP) Handbook. The results indicate that a sufficient number of available experiments may be available to perform validations for these systems.Many different cladding materials and fuel dopants are included in ATFs to mitigate the consequences of a loss of coolant accident. Some of these systems have already been fabricated and introduced as lead test assemblies in commercial reactors, while others are still being developed. Several concepts were considered for pressurized-water reactors (PWRs) and boiling-water reactors (BWRs) in comparison to the current Zircaloy and UO2 fuel system. In most of these cases, the ATF materials did not significantly impact the number of applicable experiments for validation. Some fuel and cladding materials were identified, however, which may reduce the number of available experiments and which will increase the nuclear data–induced uncertainty in neutron multiplication.

Marshall, William (B.J.)↗

Enlightened Education: Solar Engineering Design to Energize School Facilities

Here, this paper explores the potential for universities, colleges, and K-12 schools to implement solar electric infrastructure projects on their campuses that not only provide financial savings but also provide learning environments and instructional opportunities for students. A recent case study at Madison College is presented for a 1.85 MW photovoltaic system that is the largest solar rooftop installation in the State of Wisconsin. The system was designed with several unique features to facilitate public access, provide students with hands-on interaction, and compare and contrast several different types of solar equipment. Special engineering design considerations should be made when installing solar on schools, and recommended practices from the Madison College experience are detailed. Madison College completed a Solar Roadmap in order to prioritize and sequence investment in solar across the multiple buildings and campus locations operated by the college. The featured installation was the first project within that plan. A ten-step guide on how to create a solar roadmap is shared, so that other schools can learn from Madison College’s experience and replicate the process for their own institutions.

14 SOLAR ENERGY↗

Conservation of Dynamics Associated with Biological Function in an Enzyme Superfamily

Enzyme superfamily members that share common chemical and/or biological functions also share common features. While the role of structure is well characterized, the link between enzyme function and dynamics is not well understood. We present a systematic characterization of intrinsic dynamics of over 20 members of the pancreatic-type RNase superfamily, which share a common structural fold. This study is motivated by the fact that the range of chemical activity as well as molecular motions of RNase homologs spans over 105 folds. Dynamics was characterized using a combination of nuclear magnetic resonance experiments and computer simulations. Phylogenetic clustering led to the grouping of sequences into functionally distinct subfamilies. Detailed characterization of the diverse RNases showed conserved dynamical traits for enzymes within subfamilies. These results suggest that selective pressure for the conservation of dynamical behavior, among other factors, may be linked to the distinct chemical and biological functions in an enzyme superfamily.

Biochemistry & Molecular Biology↗

Intense Reactivity in Sulfur–Hydrogen Mixtures at High Pressure under X-ray Irradiation

Superconductivity near room temperature in the sulfur–hydrogen system arises from a sequence of reactions at high pressures, with X-ray diffraction experiments playing a central role in understanding these chemical–structural transformations and the corresponding S:H stoichiometry. Here we document X-ray irradiation acting as both a probe and as a driver of chemical reaction in this dense hydride system. We observe a reaction between molecular hydrogen (H 2 ) and elemental sulfur (S 8 ) under high pressure, induced directly by X-ray illumination, at photon energies of 12 keV using a free electron laser. The rapid synthesis of hydrogen sulfide (H 2 S) at 0.3 GPa was confirmed by optical observations, spectroscopic measurements, and microstructural changes detected by X-ray diffraction. These results document X-ray induced chemical synthesis of superconductor-forming dense hydrides, revealing an alternative production strategy and confirming the disruptive nature of X-ray exposure in studies on high-pressure hydrogen chalcogenides, from water to high-temperature superconductors.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Voltage-induced long-range coherent electron transfer through organic molecules

Biological structures rely on kinetically tuned charge transfer reactions for energy conversion, biocatalysis, and signaling as well as for oxidative damage repair. Unlike man-made electrical circuitry, which uses metals and semiconductors to direct current flow, charge transfer in living systems proceeds via biomolecules that are nominally insulating. Long-distance charge transport, which is observed routinely in nucleic acids, peptides, and proteins, is believed to arise from a sequence of thermally activated hopping steps. However, a growing number of experiments find limited temperature dependence for electron transfer over tens of nanometers. To account for these observations, we propose a temperature-independent mechanism based on the electric potential difference that builds up along the molecule as a precursor of electron transfer. Specifically, the voltage changes the nature of the electronic states away from being sharply localized so that efficient resonant tunneling across long distances becomes possible without thermal assistance. This mechanism is general and is expected to be operative in molecules where the electronic states densely fill a wide energy window (on the scale of electronvolts) above or below the gap between the highest-occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO). We show that this effect can explain the temperature-independent charge transport through DNA and the strongly voltage-dependent currents that are measured through organic semiconductors and peptides.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Web Based Beamline Control System (Bluesky Web) v0.1.0

Bluesky Web is a web based interface that provides beam line controls to the end user. It allows users to issue commands to various physical devices at a beam line end station like motors and cameras. It utilizes an open source Python library (Bluesky) as the controller. It uses Bluesky to also allow for running "plans" or a sequence of device operations that can be used when running an experiment. This program is different from other controls technologies because it is intended to be open source and can be accessed from a web browser, as opposed to other paid software that is run as a stand-alone application on a computer.

De Leon, Seij↗

Microreactor Core Transportation Cask Model Description for Criticality Safety Validation Basis Assessment (Rev. 1)

Criticality safety analyses are completed on transportation casks used for microreactor whole core shipment to provide examples of models and analyses to industry, regulators, and nuclear community at large to be used in verification and validation analyses of similar applications. The microreactors considered are based on a Gas-Cooled Microreactor (GCMR) and a Heat-Pipe Microreactor (HPMR), both utilize HALEU fuel in the form of TRISO particles and various other design options considered in industry microreactor designs. Variant design options of GCMR and HPMR were also investigated to provide a wider application range for each technology. Criticality safety analyses for the GCMR and HPMR packages were performed using the CSAS6 sequence of SCALE 6.3.2 with the ENDF/B-VII.1-based continuous energy neutron libraries. Different scenarios were investigated, including normal operation and water flooded conditions to represent nominal and hypothetical accident scenarios. Sensitivity and similarity analyses are also performed using the TSUNAMI sequence of SCALE 6.3.2, and the similarity analysis uses all the experiments from the ICSBEP Handbook with Intermediate and mixed Enriched Uranium (IEU) and Low Enriched Uranium (LEU) systems, together with additional experiments that are sponsored by the DNCSH program. Many experiments were found marginally similar to the GCMR and HPMR models, with similarity index (ck) values greater than 0.8 but less than 0.9. Among all the experiments analyzed, no case has a ck value greater than 0.9, indicating that additional critical experiments might be needed to further validate the criticality safety models for microreactors transport packages.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Microreactor Core Transportation Cask Model Description for Criticality Safety Validation Basis Assessment (Rev. 2)

Criticality safety analyses are completed on transportation casks used for microreactor whole core shipment to provide examples of models and analyses to industry, regulators, and nuclear community at large to be used in verification and validation analyses of similar applications. The microreactors considered are based on a Gas-Cooled Microreactor (GCMR) and a Heat-Pipe Microreactor (HPMR), both utilize HALEU fuel in the form of TRISO particles and various other design options considered in industry microreactor designs. Variant design options of GCMR and HPMR were also investigated to provide a wider application range for each technology. Criticality safety analyses for the GCMR and HPMR packages were performed using the CSAS6 sequence of SCALE 6.3.2 with the ENDF/B-VII.1-based continuous energy neutron libraries. Different scenarios were investigated, including normal operation and water flooded conditions to represent nominal and hypothetical accident scenarios. Sensitivity and similarity analyses are also performed using the TSUNAMI sequence of SCALE 6.3.2, and the similarity analysis uses all the experiments from the ICSBEP Handbook with High Enriched Uranium (HEU), Intermediate and mixed Enriched Uranium (IEU) and Low Enriched Uranium (LEU) systems. Many ICSBEP experiments were found marginally similar, with similarity index (ck) values greater than 0.8, to the GCMR and HPMR cask models, especially in flooded conditions that may be more constraining due to reduced reactivity margins. Some experiments using TRISO fuel particles and graphite moderator, including the recent THETA and Deimos experiments from LANL, together with some IRPhEP experiments, were also used for the similarity analyses. These TRISO-fueled and graphite moderated experiments behaved similarly to the GCMR models, with maximum ck value greater than 0.9, but they are less similar to the HPMR models. This observation indicates that additional critical experiments might be needed to further validate the criticality safety models, especially for heat-pipe based microreactor transport packages and for non-flooded transportation configurations.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Xavier: High-Performance X-Drop Adaptive Banded Pairwise Alignment (Xavier) v1.0

Pairwise sequence alignment is one of the most compute-intense challenges for the analysis of genomics data and it can account for more than 90% of the runtime depending on the application. Despite the effort to reduce the computational cost introducing heuristics such as banded and x-drop alignment, the performance of state-of-the-art software is often unsatisfactory for long sequences. Recent advances in single-molecule sequencing technologies keep increasing the length of the sequences to align at the cost of higher error rates b ranging from 5% to 15% b, emphasizing the need for fast and accurate software. Our long-read alignment software, named Xavier, computes high-performance x-drop adaptive banded pairwise alignment exploiting instruction-level parallelism via Single-Instruction-Multiple-Data (SIMD) operations. Xavier uses a narrow bandwidth that appreciably improves performance reducing the search space for the optimal alignment. In our experiment, the adaptive mechanism enables Xavier to find the optimal alignment between related sequences even when the error rate is as high as 50%. Xavier achieves speed-up up to 5X over competitor software when enabling the x-drop termination and up to 415X when disabling it, with negligible accuracy loss.

Guidi, Giulia↗

Determination of critical experiment correlations for experiments involving highly enriched uranium solutions

Quantifying the correlations among critical experiments has become a topic of interest over the last 10-15 years. The correlations arise from the shared use of fissile material, non-fissile materials, fixtures, and procedures in multiple experiments or multiple experiment series. A Monte Carlo sampling technique proposed as a viable technical method to evaluate these correlations has been implemented within the SCALE 6.2 Sampler sequence. This paper presents the investigation of the use of this new tool and technique for highly enriched uranium solution experiments. One of the first attempts to quantify the correlations among critical experiments examined a series of highly enriched solution experiments, including the HST-001 series. These correlations are included in the International Criticality Safety Benchmark Evaluation Project Handbook, and they form a basis for methodology comparisons. Results generated using the Sampler implementation are compared with these previously published results. Additional studies involving the HST-001 experiment series are also presented. A range of different assumptions of the independence of the geometry components, enrichments, and other material compositions are implemented to investigate the impact of these assumptions on the correlation coefficients. These effects are investigated with these experiments because the calculation time is shorter for the solution experiments than for the low-enriched lattice experiments discussed in a companion paper. The magnitude of the effects of different independence assumptions on the correlation coefficients is important to establish which parameters must be clearly identified as shared or unique for accurate correlation determinations. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Practical choices for space-filling designs

Space-filling designs are now commonly used as a flexible model-free strategy for providing good coverage throughout an input space of interest for a variety of computer and physical experiment design scenarios. Some of the preliminary choices about how to frame the problem and which type of design to use can have a substantial impact on the success or failure of the experiment, and yet how to make these critical choices is often under-emphasized in the literature. In this paper, we explore several of the practical choices required by the experimenter and describe a sequence of steps to help create an ideal design that matches the goals and constraints of the experiment. These choices include the specification of the input space, the scaling of the variables, the degree of uniformity of the design points across the input space, and the space-filling characteristics. In addition, some new tools for defining the weights to implement non-uniform space-filling designs are provided. Finally, the methods are demonstrated with several illustrative examples and a real-world chemical engineering experiment for carbon capture.

42 ENGINEERING↗

Two-dimensional heteronuclear single quantum coherence (HSQC) NMR spectra of lignin isolated from Populus trichocarpa residues after CELF pretreatment and CBP fermentation

Here we present a curated dataset of a series of two-dimensional heteronuclear single quantum coherence (HSQC) nuclear magnetic resonance (NMR) spectra of lignin isolated from a woody energy crop (Populus trichocarpa) residues after co-solvent enhanced lignocellulosic fractionation (CELF) pretreatment and consolidated bioprocessing (CBP) process. The natural poplar variant GW-9947 from the Center for Bioenergy Innovation (CBI) was used. The poplar was knife milled and passed through a 1 mm sieve. The CELF pretreatment was performed in a Parr autoclave reactor with 7.5 wt % solids loading, 0.5 wt% H2SO4 as catalyst at 150°C with 15, 25 and 30 minutes, respectively. Tetrahydrofuran was added in a 1:1 mass ratio with water as the pretreatment solvent. The residues from CELF pretreatment were then subjected to CBP using the bacterium C. thermocellum DSM 1313. CBP fermentations were performed at 60 °C in a shaker at 50 grams/L solids loadings. Lignin was isolated from the pretreated samples after ball-milling in a porcelain jar with ceramic balls via Retsch PM 200 at 580 rpm for 2.5 h followed by enzymatic hydrolysis in acetate buffer (pH 4.8, 50 °C) for 48 h. The lignin samples were characterized using 13C–1H HSQC experiments which were performed in a Bruker Avance III HD 500 MHz NMR spectrometer operating at a frequency of 125.12 MHz for the 13C nucleus. A standard Bruker pulse sequence was used on a Prodigy platform cryoprobe. The dry lignin samples were dissolved in deuterated dimethylsulfoxide for HSQC experiments. The spectra were acquired under the following acquisition conditions: 210 ppm spectral width in F1 (13C) dimension with 256 data points and 11 ppm spectral width in F2 (1H) dimension with 1024 data points, a 90° pulse, a one bond C–H coupling constant of 145 Hz, a 1.0 s pulse delay, and 64 scans. All the data was processed using the TopSpin 3.6 software (Bruker BioSpin). The NMR spectra provides structural characteristics information about lignin remaining in solids after CELF (150 °C with 15, 25 and 30 minutes) process and C. thermocellum CBP.

Lignin structure, HSQC, poplar, CELF, CBP, CBI↗

Determination of Critical Experiment Correlations for Experiments Involving Arrays of Low-Enriched Fuel Rods

Quantifying correlations among critical experiments has become a topic of interest over the last 10–15 years. Correlations arise from the shared use of fissile material, nonfissile materials, fixtures, and procedures in multiple experiments or multiple experiment series. A Monte Carlo sampling technique proposed as a viable technical method to evaluate these correlations has been implemented in the SCALE 6.2 Sampler sequence. This paper presents an investigation of the use of this new tool and technique for low-enriched uranium pin array experiments with a thermal neutron energy spectrum. The Nuclear Energy Agency’s Expert Group on Uncertainty Analyses for Criticality Safety Assessments has been examining methods of calculating the correlation coefficients among experiments from the LCT-007 and LCT-039 series. Results for two scenarios are presented to demonstrate the impact of pin pitch uncertainty modeling on the correlation coefficients. The convergence of the correlation coefficients is also investigated. Additional studies examine the impact of the stochastic uncertainty and the use of continuous-energy Monte Carlo for individual realizations on the correlation coefficients. Correlation coefficients are also determined for the LCT-042 experiment series. This experiment series differs from other experiments because unique poison panels and fuel array separation distances may reduce correlation of the individual experiments within the series. The effects of pin pitch uncertainty and stochastic uncertainty are also examined for this series. Comparing the results of the two sets of experiments shows potential conclusions that can be drawn regarding viability of the Monte Carlo sampling technique for determining critical experiment correlations.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

High-quality genome of the basidiomycete yeast Dioszegia hungarica PDD-24b-2 isolated from cloud water

The genome of the basidiomycete yeast Dioszegia hungarica strain PDD-24b-2 isolated from cloud water at the summit of puy de $D\hat{o}me$ (France) was sequenced using a hybrid PacBio and Illumina sequencing strategy. The obtained assembled genome of 20.98 Mb and a GC content of 57% is structured in 16 large-scale contigs ranging from 90 kb to 5.56Mb, and another 27.2 kb contig representing the complete circular mitochondrial genome. In total, 8,234 proteins were predicted from the genome sequence. The mitochondrial genome shows 16.2% cgu codon usage for arginine but has no canonical cognate tRNA to translate this codon. Detected transposable element (TE)-related sequences account for about 0.63% of the assembled genome. A dataset of 2,068 hand-picked public environmental metagenomes, representing over 20 Tbp of raw reads, was probed for D. hungarica related ITS sequences, and revealed worldwide distribution of this species, particularly in aerial habitats. Growth experiments suggested a psychrophilic phenotype and the ability to disperse by producing ballistospores. The high-quality assembled genome obtained for this D. hungarica strain will help investigate the behavior and ecological functions of this species in the environment.

59 BASIC BIOLOGICAL SCIENCES↗

A cost-benefit analysis to select the most effective method for positional cloning: genotyping by sequencing versus allele-specific PCR

Next-generation sequencing technologies have enabled the rapid generation of high-resolution genetic maps to enable the identification of genomic regions associated with traits of interest. In certain cases these regions of interest need to be narrowed down via fine mapping to increase resolution to the level of the individual gene. In those cases, there is a choice of genotyping options, whereby cost, time, and information content need to be considered. We developed detailed, customizable models to compare the cost of genotyping by sequencing and allele-specific PCR for fine-mapping genomic regions of interest. The models were validated experimentally with data from a fine-mapping experiment designed to identify candidate genes within a 3.2-Mb disease resistance locus in the cereal crop sorghum (Sorghum bicolor (L.). Moench), which has a sequenced genome. The size of the mapping population, genetic diversity of the parental lines, choice of reagents, and labor cost were shown to influence the overall cost of the two methods, and, consequently, which method would be most cost-effective for a given experiment. Here, the model can be easily customized to reflect experiments with different species, genetic populations, experimental and personnel costs to determine the most cost-effective procedure for a new positional cloning project.

Cost analysis↗

Discovery of unconventional and nonintuitive self-assembling peptide materials using experiment-driven machine learning

Prediction of peptide secondary structure is challenging because of complex molecular interactions, sequence-specific behavior, and environmental factors. Traditional design strategies, based on hydrophobicity and structural propensity, can be biased and could indeed prevent discovery of interesting, diverse, and unconventional peptides with desired nanostructure assembly. Using β sheet formation in pentapeptides as a case study, we used an integrated high-throughput experimental workflow and an artificial intelligence–driven active learning framework to improve prediction accuracy of self-assembly. By focusing on sequences where machine learning (ML) predictions deviate from conventional design strategies, we synthesized and tested 268 pentapeptides, successfully finding 96 forming β sheet assemblies, including unconventional sequences (e.g., ILFSM, LMISI, MITIY, MISIW, and WKIYI) not predicted by traditional methods. Our ML models outperformed conventional β sheet propensity tables, revealing useful chemical design rules. A web interface is provided to facilitate community access to these models. This work highlights the value of ML-driven approaches in overcoming the limitations of current peptide design strategies.

Talluri, Y. Nissi [Indian Inst. of Technology (IIT↗

Structure-based analysis of CysZ-mediated cellular uptake of sulfate

Sulfur, most abundantly found in the environment as sulfate (SO 4 2- ), is an essential element in metabolites required by all living cells, including amino acids, co-factors and vitamins. However, current understanding of the cellular delivery of SO 4 2- at the molecular level is limited. CysZ has been described as a SO 4 2- permease, but its sequence family is without known structural precedent. Based on crystallographic structure information, SO 4 2- binding and flux experiments, we provide insight into the molecular mechanism of CysZ-mediated translocation of SO 4 2- across membranes. CysZ structures from three different bacterial species display a hitherto unknown fold and have subunits organized with inverted transmembrane topology. CysZ from Pseudomonas denitrificans assembles as a trimer of antiparallel dimers and the CysZ structures from two other species recapitulate dimers from this assembly. In conclusion, mutational studies highlight the functional relevance of conserved CysZ residues.

59 BASIC BIOLOGICAL SCIENCES↗

Determination of critical experiment correlations for experiments involving arrays of low-enriched fuel rods

Quantifying correlations among critical experiments has become a topic of interest over the last 10-15 years. Correlations arise from the shared use of fissile material, non-fissile materials, fixtures, and procedures in multiple experiments or multiple experiment series. A Monte-Carlo sampling technique proposed as a viable technical method to evaluate these correlations has been implemented in the SCALE 6.2 Sampler sequence. This paper presents an investigation of the use of this new tool and technique for low-enriched uranium pin array experiments with a thermal neutron energy spectrum. The Nuclear Energy Agency's Expert Group on Uncertainty Analyses for Criticality Safety Assessments has been examining methods of calculating the correlation coefficients among experiments from the LCT-007 and LCT-039 series. Results for two scenarios are presented to demonstrate the impact of pin pitch uncertainty modeling on the correlation coefficients. The convergence of the correlation coefficients is also investigated. Additional studies examine the impact of the stochastic uncertainty and the use of continuous-energy Monte-Carlo for individual realizations on the correlation coefficients. Correlation coefficients are also determined for the LCT-042 experiment series. This experiment series differs from other experiments because unique poison panels and fuel array separation distances may reduce correlation of the individual experiments within the series. The effects of pin pitch uncertainty and stochastic uncertainty are also examined for this series. Comparing the results of the two sets of experiments shows potential conclusions that can be drawn regarding viability of the Monte-Carlo sampling technique for determining critical experiment correlations. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗