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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 163 records · Page 9
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Structural basis for sensitivity and acquired resistance of fungal cap guanine-N7 methyltransferases to the antifungal antibiotic sinefungin

Abstract The essential enzyme messenger RNA (mRNA) (guanine-N7) methyltransferase catalyzes S-adenosylmethionine (SAM)-dependent conversion of GpppRNA ends to the m7GpppRNA cap structure characteristic of eukaryal mRNAs. The antibiotic sinefungin (SFG) is a SAM analog in which the S-CH3 sulfonium moiety of SAM is replaced by a C-NH2 amine. Available evidence indicates that the antifungal activity of SFG is exerted via inhibition of fungal cap methyltransferase Abd1. Here we report that recombinant Kluyveromyces lactis and Saccharomyces cerevisiae Abd1 are 240-fold and 485-fold more sensitive to inhibition by SFG than by the reaction product S-adenosylhomocysteine (SAH). Crystal structures of K. lactis and S. cerevisiae Abd1 as binary complexes with SAH or SFG and ternary complexes with GTP•SFG highlight how SFG makes two hydrogen bonds from its C-NH2 amine to the guanine-O6 and -N7 atoms of GTP that account for its higher affinity vis-à-vis SAH and SAM. Through a genetic screen to isolate SFG-resistant S. cerevisiae strains, a conserved tyrosine (Tyr416) that interacts with the cap guanine in Abd1 was identified as a key determinant of SFG potency. Tyr416 Abd1 variants confer SFG resistance in vitro by weakening cap-assisted SFG interactions with Abd1. Our study illuminates the basis for the exquisite SFG sensitivity of fungal cap methyltransferases.

Biochemistry & Molecular Biology↗
NASA NTRS1989

Sensitivity of actively damped structures to imperfections and modeling errors

The sensitivity of actively damped response of structures with respect to errors in the structural modeling is studied. Two ways of representing errors are considered. The first approach assumes errors in the form of spatial variations (or imperfections) in the assumed mass and stiffness properties of the structures. The second approach assumes errors due to such factors as unknown joint stiffnesses, discretization errors, and nonlinearities. These errors are represented here as discrepancies between experimental and analytical mode shapes and frequencies. The actively damped system considered here is a direct-rate feedback regulator based on a number of colocated velocity sensors and force actuators. The response of the controlled structure is characterized by the eigenvalues of the closed-loop system. The effects of the modeling errors are thus presented as the sensitivity of the eigenvalues of the closed-loop system. Results are presented for two examples: (1) a three-span simply supported beam controlled by three sensors and actuators, and (2) a laboratory structure consisting of a cruciform beam supported by cables.

Haftka, Raphael T.↗
DOE OSTI2024

New physical processes for extracting GPDs with a better sensitivity to partonic structure

We introduce a new type of exclusive processes for a better study of generalized parton distributions (GPDs), which we refer to as single-diffractive hard exclusive processes (SDHEPs). We advocate a two-stage framework for picturing SDHEPs based on the separation of scales, which gives a clear description both kinematically and dynamically. We examine the sensitivity of the SDHEP to the parton momentum fraction x -dependence of GPDs, and demonstrate it quantitatively with two specific processes that can be readily measured at J-PARC or AMBER using a pion beam and at JLab using a photon beam, respectively. Both processes are capable of providing enhanced sensitivity to the x -dependence, overcoming the problem of shadow GPDs, and disentangling different types of GPDs with various spin asymmetries.

Qiu, Jianwei↗
DOE OSTI2025

In situ Gas Cell TEM Investigation of Nanoporous and Zeolite-based Nanocatalysts

A crucial application of in situ transmission electron microscopy is the understanding of nanocatalysts and the effect of the environment on their structure. Pre-treatments, such as calcination or annealing, can dramatically impact the catalytic properties by modifying the morphology and composition of nanostructures. Zeolites and nanoporous structures are particularly sensitive to reactive environments as the porosity or the chemical state can substantially change during the interaction with gases at elevated temperatures.[1] For instance, it has been shown that heating in air causes redispersion of sintered Cu clusters on zeolite, improving the catalytic properties.[2] These observations are possible though innovative in situ TEM gas holders, where the samples are enclosed into a small cell with SiNx windows, isolating the reactive environment from the rest of the column. [3] Here, we present in situ gas cell experiments of sensitive nanoporous structure and zeolite-based nanocatalysts. Scanning transmission electron microscopy (STEM) and electron energy-loss spectroscopy were used to understand migration of Al during calcination. In situ diagnostics also help distinguish Al as Bronsted sites, extra-framework Lewis sites, or bulk alumina. More broadly, in situ gas-heating TEM experiments are useful to determine chemical changes and modification of morphology of sensitive nanocatalysts upon pre-treatment (Figure 1).[4] Detailed in situ STEM and energy-dispersive X-ray spectroscopy (EDS) demonstrated compositional changes in nanoporous CuAlTi structures for hydrogen-deuterium exchange (H2-D2) reaction. Coarsening due to annealing at high temperature, a necessary steps for the preparation of catalysts, can be reversed by applying a redox cycle. Using the wide range of gases and temperature, the diagnostics are helpful to derive fundamental understanding of these catalysts at the atomic scale and also provide general guidelines to improve their design.

Foucher, Alexandre [ORNL] (ORCID:0000000150424002)↗
NASA NTRS1987

Design sensitivity analysis of nonlinear structural response

A unified theory is described of design sensitivity analysis of linear and nonlinear structures for shape, nonshape and material selection problems. The concepts of reference volume and adjoint structure are used to develop the unified viewpoint. A general formula for design sensitivity analysis is derived. Simple analytical linear and nonlinear examples are used to interpret various terms of the formula and demonstrate its use.

Cardoso, J. B.↗
NASA NTRS1991

Computational aspects of sensitivity calculations in linear transient structural analysis

The calculation of sensitivities of displacements, velocities, accelerations, and stresses in linear, structural, and transient response problems is studied. Several existing sensitivity calculation methods and two new methods are compared for three example problems. Approximation vectors such as vibration mode shapes are used to reduce the dimensionality of the finite model. To be computationally practical in large-order problems, the overall finite difference methods must use the approximation vectors from the original design in the analyses of the perturbed models. This was found to result in poor convergence of stress sensitivities in several cases. Two semianalytical techniques are developed to overcome this poor convergence. Both new methods result in very good convergence of the stress sensitivities; the computational cost is much less than would result if the vibration modes were recalculated and then used in an overall finite difference method.

Greene, W. H.↗
DOE OSTI2025

Sensitive Detection of Structural Differences using a Statistical Framework for Comparative Crystallography

Chemical and conformational changes underlie the functional cycles of proteins. Comparative crystallography can reveal these changes over time, over ligands, and over chemical and physical perturbations in atomic detail. A key difficulty, however, is that the resulting observations must be placed on the same scale by correcting for experimental factors. We recently introduced a Bayesian framework for correcting (scaling) X-ray diffraction data by combining deep learning with statistical priors informed by crystallographic theory. To scale comparative crystallography data, we here combine this framework with a multivariate statistical theory of comparative crystallography. By doing so, we find strong improvements in the detection of protein dynamics, element-specific anomalous signal, and the binding of drug fragments.

Hekstra, Doeke R. [Harvard Univ., Cambridge, MA (U↗
DOE OSTI2025

Sensitivity of electronic structure to crystal distortions in infinite-layered LaNiO 2

Recent observations of unconventional superconductivity (SC) in thin films of LaNiO 2 (critical temperature T c ≃ 10 K) and in bulk single crystals of La 3 ⁢Ni 2 ⁢O 7 under pressure T c ≃ 80K have cemented a long sought-after class of SC nickelates. In La 1–x ⁢Sr⁢ x ⁢NiO 2 , SC appears only in films for reasons not understood. We perform a combination of experiments to probe the crystal structure and magnetic order in bulk LaNiO 2 together with ab initio calculations of the electronic structure. We find that the infinite layers are naturally buckled out-of-plane. The electronic bands are largely unaffected by the buckling, but uniaxial compression along the c axis may lead to a Lifshitz transition.

36 MATERIALS SCIENCE↗
DOE OSTI2025

Sensitive detection of structural dynamics using a statistical framework for comparative crystallography

Chemical and conformational changes are crucial to protein function and its pharmacological control. X-ray crystallography can reveal these changes in atomic detail, but standard analysis methods, which refine separate datasets, often overlook differences that are subtle or arise in only a subset of molecules. Direct comparison of crystallographic datasets is, in principle, more powerful, but systematic errors (“scales”) often mask changes in the crystallographic observables (“structure factors”). Machine learning algorithms that jointly estimate scales and structure factors can address this limitation. Here, we augment this approach with multivariate, structured priors derived from crystallographic theory, implemented in the variational deep learning framework Careless. Doing so strongly improves the detection of protein dynamics, element-specific anomalous signals, and the binding of drug candidates, offering a robust approach to comparative crystallography and, potentially, to detection of protein dynamics by other structure determination methods.

Hekstra, Doeke R. [Harvard Univ., Cambridge, MA (U↗
DOE OSTI2020

High-Sensitivity Nuclear-Structure Studies of Rare Isotopes and Few-Electron Systems

This final technical report presents the work that was completed during the award period for DE-SC0017649 related to the structure of nuclei for both astrophysics and tests of the Standard Model, namely: Using trapped bare (and few-electron) radioactive ions to probe the nature of elec- troweak decay modes under extreme conditions for structure and astrophysics, Providing experimental nuclear structure guidance to nuclear theory in systems relevant for testing the Standard Model, and Working with the HPGe sub-group of the FRIB decay station collaboration, which includes the technical development of a next-generation γ-ray spectrometer.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2025

Canopy structure modulates the sensitivity of subalpine forest stands to interannual snowpack and precipitation variability

A declining spring snowpack is expected to have widespread effects on montane and subalpine forests in western North America and across the globe. The way that tree water demands respond to this change will have important impacts on forest health and downstream water subsidies. Here, we present data from a network of sap velocity sensors and xylem water isotope measurements from three common tree species (Picea engelmannii, Abies lasiocarpa and Populus tremuloides) across a hillslope transect in a subalpine watershed in the Upper Colorado River basin. We use these data to compare tree- and stand-level responses to the historically high spring snowpack but low summer rainfall of 2019 against the low spring snowpack but high summer rainfall amounts of 2021 and 2022. From the sap velocity data, we found that only 40 % of the trees showed an increase in cumulative transpiration in response to the large snowpack year (2019), illustrating the absence of a common response to interannual spring snowpack variability. The trees that increased water use during the year with the large spring snowpack were all found in dense canopy stands – irrespective of species – while trees in open-canopy stands were more reliant on summer rains and, thus, more active during the years with modest snow and higher summer rain amounts. Using the sap velocity data along with supporting measurements of soil moisture and snow depth, we propose three mechanisms that lead to stand density modulating the tree-level response to changing seasonality of precipitation: Topographically mediated convergence zones have consistent access to recharge from snowmelt which supports denser stands with high water demands that are more reliant and sensitive to changing snow. Interception of summer rain in dense stands reduces the throughfall of summer rain to surface soils, limiting the sensitivity of the dense stands to changes in summer rain. Shading in dense stands allows the snowpack to persist deeper into the growing season, providing high local reliance on snow during the fore-summer (early-summer) drought period. Combining data generated from natural gradients in stand density, like this experiment, with results from controlled forest-thinning experiments can be used to develop a better understanding of the responses of forested ecosystems to futures with reduced spring snowpack.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1982

Second-order sensitivity derivatives in structural analysis

Haug's (1981) expressions for the calculation of static constraint function second derivatives have resulted in an order-of-magnitude saving over conventional methods for the calculation of such derivatives. A similar but simplified procedure is presented which results in a reduction of computational cost by an additional factor of two. The results are presented in a notation that is different from that of Haug, but more common in other work on structural synthesis and analysis.

Haftka, R. T.↗
NASA NTRS1992

Sensitivity of the structure of untripped mixing layers to small changes in initial conditions

An experimental study was conducted concerning the influence of small changes in initial conditions on the near- and far-field evolution of the three-dimensional structure of a plan mixing layer. A two-stream mixing layer with a velocity ratio of 0.6 was generated with the initial boundary layers on the splitter plate laminar and was nominally two-dimensional. The initial conditions were changed slightly by interchanging the high- and low-speed sides of the wind tunnel, while maintaining the same velocities, and hence velocity ratio. This resulted in small changes in the initial boundary layer properties, and the perturbations present in the boundary layers were interchanged between the high- and low-speed sides for the two cases. The results indicate that, even with this relatively minor change in initial conditions, the near-field regions of the two cases differ significantly. The peak Reynolds stress levels in the near-field differ by up to 100 percent, and this is attributed to a difference in the location of the initial spanwise vortex roll-up. In addition, the positions and shapes of the individual streamwise vortical structures differ for the two cases, although the overall structures differ for the two cases, although the overall qualitative description of these structures is comparable. The subsequent reorganization and decay of the streamwise vortical structures is very similar for the two cases. As a result, in the far field, both mixing layers achieve similar structure, yielding comparable growth rates, Reynolds stress, distribution, and spectral content.

Plesniak, M. W.↗
NASA NTRS1992

Improved procedures for eigenvalue approximation and sensitivities for active structures

The equations of motion of actively controlled structures are usually reduced to first order form, a procedure which obscures symmetries that are present in the second order form of these equations. The loss of symmetry requires the calculation of both left and right eigenvectors for obtaining derivatives of the stability eigenvalues of the system. The paper shows that, for some control laws, only right eigenvectors are required if derivatives are obtained from the second order form of the equations of motion. The paper also examines reduced basis approximations for the eigenvalues and their derivatives. It is shown that including Ritz vectors representing the effect of local actuation forces in the reduced basis improves the accuracy of the eigenvalues and eigenvalue derivatives. Two active truss examples are used for demonstrating the improved accuracy.

Ponslet, Eric↗
DOE OSTI2022

The N3/TiO 2 interfacial structure is dependent on the pH conditions during sensitization

The electronic structure of the N3/TiO 2 interface can directly influence the performance of a dye sensitized solar cell (DSSC). Therefore, it is crucial to understand the parameters that control the dye’s orientation on the semiconductor’s surface. A typical step in DSSC fabrication is to submerge the nanoparticulate semiconductor film in a solution containing the dye, the sensitizing solution. The pH of the N3 sensitizing solution determines the distribution of the N3 protonation states that exist in solution. Altering the pH of the sensitizing solution changes the N3 protonation states that exist in solution and, subsequently, the N3 protonation states that anchor to the TiO 2 substrate. We utilize the surface specific technique of heterodyne detected vibrational sum frequency generation spectroscopy to determine the binding geometry of N3 on a TiO 2 surface as a function of the sensitizing solution pH conditions. It is determined that significant reorientation of the dye occurs in pH ≤ 2.0 conditions due to the lack of N3-dye carboxylate anchoring groups participating in adsorption to the TiO 2 substrate. Consequently, the change in molecular geometry is met with a change in the interfacial electronic structure that can hinder electron transfer in DSSC architectures.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
NASA NTRS1987

Behavior sensitivities for control augmented structures

During the past few years it has been recognized that combining passive structural design methods with active control techniques offers the prospect of being able to find substantially improved designs. These developments have stimulated interest in augmenting structural synthesis by adding active control system design variables to those usually considered in structural optimization. An essential step in extending the approximation concepts approach to control augmented structural synthesis is the development of a behavior sensitivity analysis capability for determining rates of change of dynamic response quantities with respect to changes in structural and control system design variables. Behavior sensitivity information is also useful for man-machine interactive design as well as in the context of system identification studies. Behavior sensitivity formulations for both steady state and transient response are presented and the quality of the resulting derivative information is evaluated.

Manning, R. A.↗
NASA NTRSDate not supplied

Fluid-Structure Interaction Simulations Of Supersonic Parachute Inflation: Model Sensitivities

Fluid-structure interaction simulations have the potential to accelerate the certification process of parachute systems for interplanetary robotic exploration missions while helping to mitigate risks by covering a wider range of scenarios than can be flight tested. The Launch, Ascent, and Vehicle Aerodynamics team is working toward actualizing this potential by further developing the capability to perform such fluid-structure interaction simulations and validating it with the best supersonic parachute flight test data available. We perform several simulations of the Advanced Supersonic Parachute Inflation Research Experiments’ third flight test (SR03) where we independently vary several parameters to determine their sensitivity on the predicted drag. We investigate sensitivity of the drag to the added mass of the confluence fitting, to the effective porosity, to how the gore seams are modeled, to viscous effects, and to deceleration. Modeling the added mass of the confluence fitting has virtually no impact on the drag, but is worthwhile to include to better match the overall system’s mass, which is important for the simulations with deceleration. Parachute drag is only marginally sensitive to porosity and viscous effects. Maximum parachute drag is most sensitive to how the gore seams are modeled, causing a nearly 20% drop when they are modeled as stiffer radials, and to deceleration, causing an additional 10% reduction. Results show improved agreement with flight test measurements when the FSI model is closest to the as-built configuration and physics experienced in flight: with the confluence fitting, viscous effects, the gore seams modeled as stiff radials, and including deceleration.

ESM↗