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At least 163 records · Page 9

Isolation and Identification of Microorganisms in JSC Mars-1 Simulant Soil

Microorganisms were isolated and identified in samples of JSC Mars-1, a Mars simulant soil. JSC Mars-1 is an altered volcanic ash from a cinder cone south of Mauna Kea, Hawaii. This material was chosen because of its similarity to the Martian soil in physical and chemical composition. The soil was obtained by excavating 40 cm deep in a vegetated area to prevent contamination. In previous studies, bacteria from this soil has been isolated by culturing on different types of media, including minimal media, and using biochemical techniques for identification. Isolation by culturing is successful only for a small percentage of the population. As a result, molecular techniques are being employed to identify microorganisms directly from the soil without culturing. In this study, bacteria were identified by purifying and sequencing the DNA encoding the 16s ribosomal RNA (16s rDNA). This gene is well conserved in species and demonstrates species specificity. In addition, biofilm formation, an indicator of microbial life, was studied with this soil. Biofilms are microbial communities consisting of microbes and exopolysaccharides secreted by them. This is a protective way of life for the microbes as they are more resistant to environmental pressures.

Mendez, Claudia↗

Detecting Change in Urban Areas at Continental Scales with MODIS Data

Urbanization is one of the most important components of global environmental change, yet most of what we know about urban areas is at the local scale. Remote sensing of urban expansion across large areas provides information on the spatial and temporal patterns of growth that are essential for understanding differences in socioeconomic and political factors that spur different forms of development, as well the social, environmental, and climatic impacts that result. However, mapping urban expansion globally is challenging: urban areas have a small footprint compared to other land cover types, their features are small, they are heterogeneous in both material composition and configuration, and the form and rates of new development are often highly variable across locations. Here we demonstrate a methodology for monitoring urban land expansion at continental to global scales using Moderate Resolution Imaging Spectroradiometer (MODIS) data. The new method focuses on resolving the spectral and temporal ambiguities between urban/non-urban land and stable/changed areas by: (1) spatially constraining the study extent to known locations of urban land; (2) integrating multitemporal data from multiple satellite data sources to classify c. 2010 urban extent; and (3) mapping newly built areas (2000-2010) within the 2010 urban land extent using a multi-temporal composite change detection approach based on MODIS 250 m annual maximum enhanced vegetation index (EVI). We test the method in 15 countries in East-Southeast Asia experiencing different rates and manifestations of urban expansion. A two-tiered accuracy assessment shows that the approach characterizes urban change across a variety of socioeconomic/political and ecological/climatic conditions with good accuracy (70-91% overall accuracy by country, 69-89% by biome). The 250 m EVI data not only improve the classification results, but are capable of distinguishing between change and no-change areas in urban areas. Over 80% of the error in the change detection can be related to definitional issues or error propagation, rather than algorithm error. As such, these methods hold great potential for routine monitoring of urban change, as well as for providing a consistent and up-to-date dataset on urban extent and expansion for a rapidly evolving region.

Urban areas↗

A VARI-Based Relative Greenness from MODIS Data for Computing the Fire Potential Index

The Fire Potential Index (FPI) relies on relative greenness (RG) estimates from remote sensing data. The Normalized Difference Vegetation index (NDVI), derived from NOAA Advanced Very High Resolution Radiometer (AVHRR) imagery is currently used to calculate RG operationally. Here we evaluated an alternate measure of RG using the Visible Atmospheric Resistant Index (VARI) derived from Moderate Resolution Imaging Spectrometer (MODIS) data. VARI was chosen because it has previously been shown to have the strongest relationship with Live Fuel Moisture (LFM) out of a wide selection of MODIS-derived indices in southern California shrublands. To compare MODIS-based NDVI-FPI and VARI-FPI, RG was calculated from a 6-year time series of MODIS composites and validated against in-situ observations of LFM as a surrogate for vegetation greenness. RG from both indices was then compared in terms of its performance for computing the FPI using historical wildfire data. Computed RG values were regressed against ground-sampled LFM at 14 sites within Los Angeles County. The results indicate the VARI-based RG consistently shows a stronger relationship with observed LFM than NDVI-based RG. With an average R2 of 0.727 compared to a value of only 0.622 for NDVI-RG, VARI-RG showed stronger relationships at 13 out of 14 sites. Based on these results, daily FPI maps were computed for the years 2001 through 2005 using both NDVI-RG and VARI-RG. These were then validated against 12,490 fire detections from the MODIS active fire product using logistic regression. Deviance of the logistic regression model was 408.8 for NDVI-FPI and 176.2 for VARI-FPI. The c-index was found to be 0.69 and 0.78, respectively. The results show that VARI-FP outperforms NDVI-FPI in distinguishing between fire and no-fire events for historical wildfire data in southern California for the given time period.

Schneider, P.↗

Thematic Mapper simulator research for forest resource mapping in the Clearwater National Forest, Idaho

Per-pixel maximum likelihood digital classification and photo interpretation of Thematic Mapper Simulator (TMS) composited images for a managed conifer forest were used to evaluate both land cover and forest structure characteristics. TMS channels 4, 7, 5 and 3, which were found to be optimal for forest vegetation analysis, used the full range of the Thematic Mapper's spectral capability. Photo interpretation results indicate that a false color composite from TMS channels 4, 7, and 2 provided the highest accuracies; the combination of improved spatial, spectral and radiometric resolution of the Thematic Mapper yielded greater sensitivity to forest structural characteristics.

Brass, J. A.↗

Environmental studies of Iceland with ERTS-1 imagery

Imagery from the ERTS-1 satellite can be used to study geological and geophysical phenomena which are important in relation to Iceland's natural resources. Multispectral scanner (MSS) imagery can be used to map areas of altered ground, intense thermal emission, fallout from volcanic eruptions, lava flows, volcanic geomorphology, erosion or build-up of land, snow cover, the areal extent of glaciers and ice caps, etc. At least five distinct vegetation types and barren areas can be mapped using MSS false-color composites. Stereoscopic coverage of iceland by side-lapping ERTS imagery permits precise analysis of various natural phenomena.

Williams, R. S., Jr.↗

Imaging spectroscopy of the terrestrial environment; Proceedings of the Meeting, Orlando, FL, Apr. 16, 17, 1990

Topics presented include the evolution of the Airborne Visible/Infrared Imaging Spectrometer flight and ground data processing system, direct mineral identification with Geoscan Mk II Advanced Multispectral Scanner, a new approach to imaging spectroscopy, and a linear-wedge spectrometer. Also presented are the effects of moisture content and chemical composition on the near-infrared spectra of forest foliage, change detection in vegetation using 1989 AVIRIS data, and the inversion of high-spectral-resolution data.

Vane, Gregg↗

Analysis of hyper-spectral AVIRIS image data over a mixed-conifer forest in Maine

An introduction to some of the potential uses of hyperspectral data for ecosystem analysis is presented. The examples given are derived from a digital dataset acquired over a sub-boreal forest in central Maine in 1990 by the NASA-JPL Airborne Visible and Infrared Imaging Spectrometer (AVIRIS) instrument gathers data from 400 to 2500 nm in 224 channels at bandwidths of approximately 10 nm. As a preview to the uses of the hyperspectral data, several products from this dataset were extracted. They range from the traditional false color composite made from simulated Thematic Mapper bands and the well known normalized difference vegetation index to much more exotic products such as fractions of vegetation, soil and shade based on linear spectral mixing models and estimates of the leaf water content at the landscape level derived using spectrum-matching techniques. Our research and that of many others indicates that the hyperspectral datasets carry much important information which is only beginning to be understood. This analysis gives an initial indication of the utility of hyperspectral data. Much work still remains to be done in algorithm development and in understanding the physics behind the complex information signal carried in the hyperspectral datasets. This work must be carried out to provide the fullest science support for high spectral resolution data to be acquired by many of the instruments to be launched as part of the Earth Observing System program in the mid-1990's.

Lawrence, William T.↗

Representation of vegetation by continental data sets derived from NOAA-AVHRR data

Images of the normalized difference vegetation index (NDVI) are examined with specific attention given to the effect of spatial scales on the understanding of surface phenomena. A scale variance analysis is conducted on NDVI annual and seasonal images of Africa taken from 1987 NOAA-AVHRR data at spatial scales ranging from 8-512 km. The scales at which spatial variation takes place are determined and the relative magnitude of the variations are considered. Substantial differences are demonstrated, notably an increase in spatial variation with coarsening spatial resolution. Different responses in scale variance as a function of spatial resolution are noted in an analysis of maximum value composites for February and September; the difference is most marked in areas with very seasonal vegetation. The spatial variation at different scales is attributed to different factors, and methods involving the averaging of areas of transition and surface heterogeneity can oversimplify surface conditions. The spatial characteristics and the temporal variability of areas should be considered to accurately apply satellite data to global models.

Justice, C. O.↗

Management of natural resources through automatic cartographic inventory

The author has identified the following significant results. Significant correspondence codes relating ERTS imagery to ground truth from vegetation and geology maps have been established. The use of color equidensity and color composite methods for selecting zones of equal densitometric value on ERTS imagery was perfected. Primary interest of temporal color composite is stressed. A chain of transfer operations from ERTS imagery to the automatic mapping of natural resources was developed.

Rey, P. A.↗

Estimating biogeochemical fluxes across sagebrush-steppe landscapes with Thematic Mapper imagery

Thematic Mapper (TM) satellite data were coupled to an ecosystem simulation model to simulate variation in nitrogen mineralization over time and space in a sagebrush steppe. This system of data inputs and calculations provides estimates of ecosystem properties including rates of biogeochemical processes over extensive and complex landscapes, and under changing management and climatic conditions. The landscape surface was divided into three sagebrush ecosystem types plus one other class consisting of nonsagebrush vegetation. This classification presented a complex mosaic of ecosystem types that shifted markedly in composition from one end of the 933-sq km study area to the other. Annual N-mineralization rates ranged from 5 to 25 kg N/ha among the three sagebrush types. The most active type comprised 42 percent of the entire area but contributed 60 percent to the nitrogen mineralization throughout the landscape.

Reiners, W. A.↗

Interactive Biogenic Emissions and Drought Stress Effects on Atmospheric Composition in NASA GISS ModelE

Drought is a hydroclimatic extreme that causes perturbations to the terrestrial biosphere and acts as a stressor on vegetation, affecting emissions patterns. During severe drought, isoprene emissions are reduced. In this paper, we focus on capturing this reduction signal by implementing a new percentile isoprene drought stress (y d ) algorithm in NASA GISS ModelE based on the MEGAN3 (Model of Emissions of Gases and Aerosols from Nature Version 3) approach as a function of a photosynthetic parameter (V c,max ) and water stress (β). Four global transient simulations from 2003–2013 are used to demonstrate the effect without y d (Default_ModelE) and with online y d (DroughtStress_ModelE). DroughtStress_ModelE is evaluated against the observed isoprene measurements at the Missouri Ozarks AmeriFlux (MOFLUX) site during the 2012 severe drought where improvements in the correlation coefficient indicate it is a suitable drought stress parameterization to capture the reduction signal during severe drought. The application of y d globally leads to a decadal average reduction of ∼ 2.7 %, which is equivalent to ∼14.6 Tg yr -1 of isoprene. The changes have larger impacts in regions such as the southeastern US. DroughtStress_ModelE is validated using the satellite ΩHCHO column from the Ozone Monitoring Instrument (OMI) and surface O 3 observations across regions of the US to examine the effect of drought on atmospheric composition. It was found that the inclusion of isoprene drought stress reduced the overestimation of ΩHCHO in Default_ModelE during the 2007 and 2011 southeastern US droughts and led to improvements in simulated O 3 during drought periods. We conclude that isoprene drought stress should be tuned on a model-by-model basis because the variables used in the parameterization responses are relative to the land surface model hydrology scheme (LSM) and the effects of y d application could be larger than seen here due to ModelE not having large biases of isoprene during severe drought.

drought stress effects↗

Monitoring Regional Forest Disturbances across the US with near Real Time MODIS NDVI Products Resident to the ForWarn Forest Threat Early Warning System

Forest threats across the US have become increasingly evident in recent years. Sometimes these have resulted in regionally evident disturbance progressions (e.g., from drought, bark beetle outbreaks, and wildfires) that can occur across multiyear durations and have resulted in extensive forest overstory mortality. In addition to stand replacement disturbances, other forests are subject to ephemeral, sometimes yearly defoliation from various insects and varying types and intensities of ephemeral damage from storms. Sometimes, after prolonged severe disturbance, signs of recovery in terms of Normalized Difference Vegetation Index (NDVI) can occur. The growing prominence and threat of forest disturbances in part have led to the formation and implementation of the 2003 Healthy Forest Restoration Act which mandated that national forest threat early warning system be developed and deployed. In response, the US Forest Service collaborated with NASA, DOE Oakridge National Laboratory, and the USGS Eros Data Center to build and roll-out the near real time ForWarn early warning system for monitoring regionally evident forest disturbances. Given the diversity of disturbance types, severities, and durations, ForWarn employs multiple historical baselines that are used with current NDVI to derive a suite of six forest change products that are refreshed every 8 days. ForWarn employs daily quarter kilometer MODIS NDVI data from the Aqua and Terra satellites, including MOD13 data for deriving historical baseline NDVIs and eMODIS 7 NDVI for compiling current NDVI. In doing so, the Time Series Product Tool and the Phenological Parameters Estimation Tool are used to temporally de-noise, fuse, and aggregate current and historical MODIS NDVIs into 24 day composites refreshed every 8 days with 46 dates of products per year. The 24 day compositing interval enables disturbances to be detected, while minimizing the frequency of residual atmospheric contamination. Forest change products are computed versus the previous 1, previous 3, and all previous years in the MODIS record for a given 24 day interval. Other "weekly" forest change products include one computed using an adaptive length compositing method for quicker detection of disturbances, two others that adjust for seasonal fluctuations in normal vegetation phenology (e.g., early versus late springs). This overall approach enables forest disturbance dynamics from a variety of regionally evident biotic and abiotic forest disturbances to be viewed and assessed through the calendar year. The change products are also being utilized for forest change trend analysis and for developing regional forest overstory mortality products. ForWarn's forest change products are used to alert forest health specialists about new forest disturbances. Such alerts are also typically based on available Landsat, aerial, and ground data as well as communications with forest health specialists and previous experience. ForWarn products have been used to detect and track many types of regional disturbances to multiple forest types, including defoliation from caterpillars and severe storms, as well as mortality from both biotic and abiotic agents (e.g., bark beetles, drought, fire, anthropogenic clearing). ForWarn offers products that could be combined with other geospatial data on forest biomass to assess forest disturbance carbon impacts within the conterminous US.

Spruce, Joseph P.↗

Effect of some detergents, humate, and composition of seedbed on crop of tomato plants in a hydroponic culture

It is established that single detergent doses distinctly stimulate vegetative development of plants in the initial stage when humates are available. When detergents are applied every four weeks in a hydroponic culture, in which the seedbed does not contain active humates, the crop is reduced by 50%. This adverse effect does not occur when the seedbed is a mixture of brown coal and peat.

Guminka, A. Z.↗

Acoustic space occupancy: Combining ecoacoustics and lidar to model biodiversity variation and detection bias across heterogeneous landscapes

There is global interest in quantifying changing biodiversity in human-modified landscapes. Ecoacoustics may offer a promising pathway for supporting multi-taxa monitoring, but its scalability has been hampered by the sonic complexity of biodiverse ecosystems and the imperfect detectability of animal-generated sounds. The acoustic signature of a habitat, or soundscape, contains information about multiple taxa and may circumvent species identification, but robust statistical technology for characterizing community-level attributes is lacking. Here, we present the Acoustic Space Occupancy Model, a flexible hierarchical framework designed to account for detection artifacts from acoustic surveys in order to model biologically relevant variation in acoustic space use among community assemblages. We illustrate its utility in a biologically and structurally diverse Amazon frontier forest landscape, a valuable test case for modeling biodiversity variation and acoustic attenuation from vegetation density. We use complementary airborne lidar data to capture aspects of 3D forest structure hypothesized to influence community composition and acoustic signal detection. Our novel analytic framework permitted us to model both the assembly and detectability of soundscapes using lidar-derived estimates of forest structure. Our empirical predictions were consistent with physical models of frequency-dependent attenuation, and we estimated that the probability of observing animal activity in the frequency channel most vulnerable to acoustic attenuation varied by over 60%, depending on vegetation density. There were also large differences in the biotic use of acoustic space predicted for intact and degraded forest habitats, with notable differences in the soundscape channels predominantly occupied by insects. This study advances the utility of ecoacoustics by providing a robust modeling framework for addressing detection bias from remote audio surveys while preserving the rich dimensionality of soundscape data, which may be critical for inferring biological patterns pertinent to multiple taxonomic groups in the tropics. Our methodology paves the way for greater integration of remotely sensed observations with high-throughput biodiversity data to help bring routine, multi-taxa monitoring to scale in dynamic and diverse landscapes.

Airborne lidar↗

Continental land cover classification using meteorological satellite data

The use of the National Oceanic and Atmospheric Administration's advanced very high resolution radiometer satellite data for classifying land cover and monitoring of vegetation dynamics over an extremely large area is demonstrated for the continent of Africa. Data from 17 imaging periods of 21 consecutive days each were composited by a technique sensitive to the in situ green-leaf biomass to provide cloud-free imagery for the whole continent. Virtually cloud-free images were obtainable even for equatorial areas. Seasonal variation in the density and extent of green leaf vegetation corresponded to the patterns of rainfall associated with the inter-tropical convergence zone. Regional variations, such as the 1982 drought in east Africa, were also observed. Integration of the weekly satellite data with respect to time produced a remotely sensed assessment of biological activity based upon density and duration of green-leaf biomass. Two of the 21-day composited data sets were used to produce a general land cover classification. The resultant land cover distributions correspond well to those of existing maps.

Tucker, C. J.↗

Utilization of LANDSAT imagery for mapping vegetation on the millionth scale

A series of test sites were examined to determine if the information content of the LANDSAT imagery that may be obtained of these sites is sufficient to permit their mapping according to the vegetation classification system recently published by Unesco. These sites include examples from the humid tropics, arid and semi-arid subtropics and temperature zones: Western Highlands of Papua New Guinea, Mindoro Island in the Philippines, Great Smoky Mountains of the southeastern United States, East Tennessee Valley, interior of Western Australia, northeastern Uganda, and south-central Kansas. The results of the experiment were presented in the form of vegetation maps and annotated images which serve to illustrate the detectability of various formations. It was concluded that, for the test sites examined, the formations of the Unesco vegetation classification can be satisfactorily distinguished on LANDSAT MSS images, especially when used as color composites and judiciously chosen as to season.

Williams, D. L.↗

Significance of vegetation in interpreting thermal radiation from a terrestrial surface

The regions between crop rows are modeled as infinitely long diffuse cavities. Geometrical view factors are calculated, accounting for reflected radiation emanating internal to the cavity and from the background sky. A 'cavity' emissivity dependent on local geometry is defined to allow for correcting apparent temperatures to true temperatures. The total emissivity appropriate for correcting aircraft thermal data is then calculated by averaging all emissivity components to account for soil, crop, and background. It is shown that even for the lowest crop and vegetation emissivities, if the crop height-to-spacing ratio is greater than unity, the composite emissivity is greatly increased, giving rise to a decreased error in remotely sensed temperature data.

Sutherland, R. A.↗

Organic matter in eolian dusts over the Atlantic Ocean

The elemental and mineralogical composition and the microfossil and detritus content of particulate fallout from the lower troposphere over the Atlantic Ocean have been extensively documented in earlier work, and it was possible to ascribe terrigenous source areas to such fallout. A brief review of the organic geochemistry of eolian dusts is also presented here. The lipids of eolian dusts sampled from the air mass over the eastern Atlantic from about 35 deg N to 30 deg S were analyzed here. These lipids consisted mainly of normal alkanes, carboxylic acids and alcohols. The n-alkanes were found to range from n-C23 to n-C35 with high CPI values and maximizing at n-C27 in the North Atlantic, at n-C29 in the equatorial Atlantic and at n-C31 in the South Atlantic. The n-fatty acids had mostly bimodal distributions, ranging from n-C12 to n-C30 (high CPI), with maxima at n-C16 and in the northern samples at n-C24 and in the southern samples at n-C26. The n-alcohols ranged from n-C12 to n-C32, with high CPI values and maxima mainly at n-C28. The compositions of these lipids indicated that their terrigenous sources were comprised mainly of higher plant vegetation and desiccated lacustrine mud flats on the African continent.

Simoneit, B. R. T.↗