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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,621 records · Page 90

Xavier: High-Performance X-Drop Adaptive Banded Pairwise Alignment (Xavier) v1.0

Pairwise sequence alignment is one of the most compute-intense challenges for the analysis of genomics data and it can account for more than 90% of the runtime depending on the application. Despite the effort to reduce the computational cost introducing heuristics such as banded and x-drop alignment, the performance of state-of-the-art software is often unsatisfactory for long sequences. Recent advances in single-molecule sequencing technologies keep increasing the length of the sequences to align at the cost of higher error rates b ranging from 5% to 15% b, emphasizing the need for fast and accurate software. Our long-read alignment software, named Xavier, computes high-performance x-drop adaptive banded pairwise alignment exploiting instruction-level parallelism via Single-Instruction-Multiple-Data (SIMD) operations. Xavier uses a narrow bandwidth that appreciably improves performance reducing the search space for the optimal alignment. In our experiment, the adaptive mechanism enables Xavier to find the optimal alignment between related sequences even when the error rate is as high as 50%. Xavier achieves speed-up up to 5X over competitor software when enabling the x-drop termination and up to 415X when disabling it, with negligible accuracy loss.

Guidi, Giulia↗

Deep Lynx MOOSE Adapter

The Deep Lynx MOOSE Adapter connects the Deep Lynx data warehouse with any MOOSE executable. The Adapter can receive events from Deep Lynx and will take incoming data to format a template input file for the MOOSE executable. Returns from the MOOSE run are sent back to Deep Lynx for use by other applications.

Browning, JerenM↗

Deep-Lynx-ML-Adapter

The Deep Lynx Machine Learning (ML) Adapter is a generic adapter that programmatically runs the ML as continuous data is received. Then, Jupyter Notebooks can be customized according to the project for pre-processing the data, building the machine learning models, prediction analysis of incoming data using an existing model, and forecasting anomalies / failures of the physical asset.

Wilsdon, KatherineN↗

Adaptive Self Tuning

The AST software includes numeric methods to 1) adjust STA/LTA signal detector trigger level (TL) values and 2) filter detections for a network of sensors. AST adapts TL values to the current state of the environment by leveraging cooperation within a neighborhood of sensors. The key metric that guides the dynamic tuning is consistency of each sensor with its nearest neighbors: TL values are automatically adjusted on a per station basis to be more or less sensitive to produce consistent agreement of detections in its neighborhood. The AST algorithm adapts in near real-time to changing conditions in an attempt to automatically self-tune a signal detector to identify (detect) only signals from events of interest.

Peterson, Matthew↗

Many-Body Adaptive Configuration Interaction Suite (MACIS) v0.1.0

The Many-Body Adaptive Configuration Interaction Suite (MACIS) is a modern C++ software infrastructure for the development of selected-configuration interaction (sCI) methods for the fermionic many-body problem in quantum chemistry and materials science. MACIS provides a high-performance, parallel implementation of the Adaptive Sampling Configuration Interaction (ASCI) method as related solvers such as self-consistent orbital optimization and the evaluation of excited states and spectral functions. Unlike existing sCI software, MACIS is developed as a modular software infrastructure which allows it to exist both as a standalone sCI solver and as a library to integrate into existing many-body codes. This modularity allows MACIS to be quickly extensible, including its integration with other sCI methods and high-performance solvers.

Williams-Young, David↗

Background Adaptive Radiation Detection (BARD) v1.0.0

The Background Adaptive Radiation Software can be deployed with static sensors in urban environments. It provides a real-time robust radiation detection based on a unique adaptive learning approach. Local radiation background models are automatically learnt for various environmental conditions, and monitored/re-trained, and selected over time for optimal radiation anomaly detection, informed by source templates directly derived from the data.

Abgrall, Nicolas↗

Adaptive Control Algorithm to Adjust Settings in Photovoltaic Inverters for Electric Grid Cybersecurity (DERAC) v0.1

Volt-VAR and Volt-Watt functionality in photovoltaic (PV) smart inverters provide mechanisms to ensure system voltage magnitudes and power factors remain within acceptable limits. However, these control functions can become unstable, introducing oscillations in system voltages when not appropriately configured or maliciously altered during a cyberattack. In the event that Volt-VAR and Volt-Watt control functions in a portion of PV smart inverters in a distribution grid are unstable, the proposed adaptation scheme utilizes the remaining and stably-behaving PV smart inverters and other Distributed Energy Resources to mitigate the effect of the instability in real-time. The adaptation mechanism is entirely decentralized, model-free, communication-free, and requires virtually no external configuration. This repository provides code to simulate the algorithm in experiments on the IEEE 37 node test feeder.

Arnold, Daniel↗

Adaptive Computing (AC) [SWR-24-106]

The Adaptive Computing (AC) software stack supports goal-based computing, for which a simulation workload is created on the fly adapting to the results of calculations. Application-specific code defines an objective, which may be to solve an optimization problem or to train a surrogate model with minimal uncertainty. Then, the AC driver decides where in the design parameter space to run simulations to best achieve that objective. This process is iterative and online; as new data is returned from simulations, the AC driver chooses new simulations to run. The AC driver can strategically run simulations on distributed hardware resources (including high performance computing machines, cloud resources, and edge devices) to maximize throughput and obey resource constraints.

Griffin, Kevin [National Renewable Energy Laborato↗

Adaptive Computing (AC) (Open Source) [SWR-24-106]

The Adaptive Computing (AC) software stack supports goal-based computing, for which a simulation workload is created on the fly, adapting to the results of calculations. Application-specific code defines an objective, which may be to solve an optimization problem or to train a surrogate model with minimal uncertainty. Then, the AC driver decides where in the design parameter space to run simulations to best achieve that objective. This process is iterative and online; as new data is returned from simulations, the AC driver chooses new simulations to run. The AC driver can strategically run simulations on distributed hardware resources (including high performance computing machines, cloud resources, and edge devices) to maximize throughput and obey resource constraints.

Griffin, Kevin [National Laboratory of the Rockies↗

Adaptive Optical Two-Photon Fluorescence Microscopy Probes Cellular Organization of Ocular Lenses In Vivo

The mammalian ocular lens is an avascular multicellular organ that grows continuously throughout life. Traditionally, its cellular organization is investigated using dissected lenses, which eliminates in vivo environmental and structural support. Therefore, in vivo optical imaging methods for studying lenses in their native context in live animals are urgently needed. Here, we demonstrated that two-photon fluorescence microscopy can visualize lens cells in vivo. To maintain subcellular resolution at depth, we used adaptive optics to correct aberrations owing to ocular and lens tissues, which led to substantial signal and resolution improvements. Imaging lens cells up to 980 µm deep, we observed novel cellular organizations including suture-associated voids, enlarged vacuoles, and large cavities, contrary to the conventional view of a highly ordered organization. We tracked these features longitudinally over weeks and observed the incorporation of new cells during growth. Taken together, noninvasive longitudinal in vivo imaging of lens morphology using adaptive optics two-photon fluorescence microscopy will allow us to observe the development or alterations of lens cellular organization in living animals directly.

60 APPLIED LIFE SCIENCES↗

A New Method for Ice-Ice Aggregation in the Adaptive Habit Model

In this paper, a novel methodology for modeling ice-ice aggregation is presented. This methodology combines a modified hydrodynamic collection algorithm with bulk aggregate characteristic information from an offline simulator that collects ice particles, namely, the Ice Particle and Aggregate Simulator, and has been implemented into the Adaptive Habit Microphysics scheme in the Weather Research and Forecasting Model. Aggregates, or snow, are formed via collection of cloud ice particles, where initial ice characteristics and the resulting geometry determine aggregate characteristics. Upon implementation, idealized squall-line simulations are performed to examine the new methodology in comparison with commonly used bulk microphysics schemes. It is found that the adaptive habit aggregation parameterization develops snow and reduces ice mass and number concentrations compared to other schemes. The development of aggregates through the new methodology cascades into other interesting effects, including enhancements in ice and snow growth, as well as homogeneous freezing. Further microphysical analyses reveal varying sensitivities, where snow processes are most sensitive to the new parameterization, followed by ice, then cloud, rain, and graupel processes. Further, the new scheme results in enhancements in surface precipitation due to the persistence of snow at lower altitudes. This persistence is a result of shape-dependent melting and sublimation, increasing the residence time. Moreover, these low-level enhancements are reflected in increases in radar reflectivity at the surface and its spatial distribution. Finally, the ability to predict snow shape and density allows for the simulation of polarimetric radar quantities, resulting in signature enhancements compared to schemes that do not consider spatial and temporal variations in snow shape and density.

54 ENVIRONMENTAL SCIENCES↗

Fuel-Based Nash Bargaining Approach for Adaptive Signal Control in an N -Player Cooperative Game

This paper presents a fuel-based game-theoretic approach for adaptive signal control. Our controller applies Nash bargaining (NB) in an n-player cooperative game to identify optimal phasing splits considering future traffic demands. The fuel-based NB controller utilizes an objective function that combines operational measures (delays and stops) with fuel consumption measures at intersections. The proposed controller was encoded in Python and then implemented and evaluated in a VISSIM microscopic traffic simulation model in an intersection with increasing volumes. The performance of the NB controller was compared to a traditional actuated control as the baseline. The results show that the NB controller was able to achieve superior environmental gains with a 17% saving in fuel consumption and a 17% reduction in CO emissions. In addition, the proposed controller was capable of maintaining acceptable operational conditions as it achieved a 20% reduction in delay, 8% reduction in the number of stops, and 8% reduction in queue lengths compared to the actuated controller. Compared to similar studies that applied NB for adaptive signal control, our fuel-based NB controller stands out as a promising approach to significantly improve fuel consumption at signalized intersections.

Engineering↗

Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.)

Advances in genomic technologies have expanded our ability to accurately and exhaustively detect natural genomic variants that can be applied in crop improvement and to increase our knowledge of plant evolution and adaptation. Switchgrass (Panicum virgatum L.), an allotetraploid (2n = 4× = 36) perennial C4 grass (Poaceae family) native to North America and a feedstock crop for cellulosic biofuel production, has a large potential for genetic improvement due to its high genotypic and phenotypic variation. In this study, we analyzed single nucleotide polymorphism (SNP) variation in 372 switchgrass genotypes belonging to 36 accessions for 12 genes putatively involved in biomass production to investigate signatures of selection that could have led to ecotype differentiation and to population adaptation to geographic zones.

59 BASIC BIOLOGICAL SCIENCES↗

Highly diverse and unknown viruses may enhance Antarctic endoliths’ adaptability

Abstract Background Rock-dwelling microorganisms are key players in ecosystem functioning of Antarctic ice free-areas. Yet, little is known about their diversity and ecology, and further still, viruses in these communities have been largely unexplored despite important roles related to host metabolism and nutrient cycling. To begin to address this, we present a large-scale viral catalog from Antarctic rock microbial communities. Results We performed metagenomic analyses on rocks from across Antarctica representing a broad range of environmental and spatial conditions, and which resulted in a predicted viral catalog comprising > 75,000 viral operational taxonomic units (vOTUS). We found largely undescribed, highly diverse and spatially structured virus communities which had predicted auxiliary metabolic genes (AMGs) with functions indicating that they may be potentially influencing bacterial adaptation and biogeochemistry. Conclusion This catalog lays the foundation for expanding knowledge of virosphere diversity, function, spatial ecology, and dynamics in extreme environments. This work serves as a step towards exploring adaptability of microbial communities in the face of a changing climate.

59 BASIC BIOLOGICAL SCIENCES↗

Adaptive optical third-harmonic generation microscopy for in vivo imaging of tissues

Third-harmonic generation microscopy is a powerful label-free nonlinear imaging technique, providing essential information about structural characteristics of cells and tissues without requiring external labelling agents. In this work, we integrated a recently developed compact adaptive optics module into a third-harmonic generation microscope, to measure and correct for optical aberrations in complex tissues. Taking advantage of the high sensitivity of the third-harmonic generation process to material interfaces and thin membranes, along with the 1,300-nm excitation wavelength used here, our adaptive optical third-harmonic generation microscope enabled high-resolution in vivo imaging within highly scattering biological model systems. Examples include imaging of myelinated axons and vascular structures within the mouse spinal cord and deep cortical layers of the mouse brain, along with imaging of key anatomical features in the roots of the model plant Brachypodium distachyon. In all instances, aberration correction led to enhancements in image quality.

60 APPLIED LIFE SCIENCES↗

High-speed real-time 3D shape measurement based on adaptive depth constraint

Stereo phase unwrapping (SPU) has been increasingly applied to high-speed real-time fringe projection profilometry (FPP) because it can retrieve the absolute phase or matching points in a stereo FPP system without projecting or acquiring additional fringe patterns. Based on a pre-defined measurement volume, artificial maximum/minimum phase maps can be created solely using geometric constraints of the FPP system, permitting phase unwrapping on a pixel-by-pixel basis. However, when high-frequency fringes are used, the phase ambiguities will increase which makes SPU unreliable. Several auxiliary techniques have been proposed to enhance the robustness of SPU, but their flexibility still needs to be improved. In this paper, we proposed an adaptive depth constraint (ADC) approach for high-speed real-time 3D shape measurement, where the measurement depth volume for geometric constraints is adaptively updated according to the current reconstructed geometry. By utilizing the spatio-temporal correlation of moving objects under measurement, a customized and tighter depth constraint can be defined, which helps enhance the robustness of SPU over a large measurement volume. Besides, two complementary techniques, including simplified left-right consistency check and feedback mechanism based on valid area, are introduced to further increase the robustness and flexibility of the ADC. Furthermore, experimental results demonstrate the success of our proposed SPU approach in recovering absolute 3D geometries of both simple and complicated objects with only three phase-shifted fringe images.

42 ENGINEERING↗

Adaptive control of laser-wakefield accelerators driven by mid-IR laser pulses

There has been growing interest both in studying high intensity ultrafast laser plasma interactions with adaptive control systems as well as using long wavelength driver beams. We demonstrate the coherent control of the dynamics of laser-wakefield acceleration driven by ultrashort (~ 100 fs) mid-infrared (~ 3.9 μ m) laser pulses. The critical density at this wavelength is 7.3 × 10 19 cm -3 , which is achievable with an ordinary gas target system. Interactions between mid-infrared laser pulses and such near-critical-density plasma may be beneficial due to much higher absorption of laser energy. In addition, the normalized vector potential of the laser field a 0 increases with longer laser wavelength, lowering the required peak laser intensity to drive non-linear laser-wakefield acceleration. Here, MeV level, collimated electron beams with non-thermal, peaked energy spectra are generated. Optimization of electron beam qualities are realized through adaptive control of the laser wavefront. A genetic algorithm controlling a deformable mirror improves the electron total charge, energy spectra, beam pointing and stability at various plasma density profiles. Particle-in-cell simulations reveal that the optimal wavefront causes an earlier injection on the density up-ramp and thus higher energy gain as well as less filamentation during the interaction, which leads to the improvement in electron beam collimation and energy spectra.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Modal focal adaptive optics for Bessel-focus two-photon fluorescence microscopy

Adaptive optics (AO) improves the spatial resolution of microscopy by correcting optical aberrations. While its application has been well established in microscopy modalities utilizing a circular pupil, its adaptation to systems with non-circular pupils, such as Bessel-focus two-photon fluorescence microscopy (2PFM) with an annular pupil, remains relatively uncharted. Herein, we present a modal focal AO (MFAO) method for Bessel-focus 2PFM. Measuring and correcting aberration using a spatial light modulator placed in conjugation with the focal plane of the microscope objective, MFAO employs Zernike annular polynomials — a first in AO implementation — to achieve performance on par with a previous zonal AO method, but with a notably simplified optical configuration. We validated the performance of MFAO in correcting artificial and sample-induced aberrations, as well as in in vivo imaging of zebrafish larvae and mouse brains. By expanding the application of modal AO to annular pupils as well as aberration measurement and correction to a wavefront modulator at the objective focal plane, MFAO represents a notable advancement in the implementation of AO in microscopy.

47 OTHER INSTRUMENTATION↗