Hydrodynamics and critical slowing down
We will introduce an effective theory which extends hydrodynamics into a regime where the critical slowing down would otherwise make hydrodynamics inapplicable.
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We will introduce an effective theory which extends hydrodynamics into a regime where the critical slowing down would otherwise make hydrodynamics inapplicable.
Impurity ions influence mineral growth rates through a variety of kinetic and thermodynamic processes that also affect partitioning of the impurity ion between the solid and solution. Here in this paper, the effect of an impurity ion, strontium, on Barite (BaSO 4 ) (001) growth rates was studied using a combination of high-resolution in situ microscopy with ex situ chemical imaging techniques. In the presence of strontium, $\langle$120$\rangle$ steps roughened and bifurcated. The overall Barite growth rate also decreased with increasing aqueous strontium-to-barium ratio ([Sr]/[Ba]aq) < 1. Analysis of the reacted solids using chemical imaging techniques indicated strontium incorporated uniformly across all step orientations into the Barite growth hillock for [Sr]/[Ba] aq < 1. However, at [Sr]/[Ba] aq > 5, steps with an apparent [010] orientation were expressed and growth in the [010] step direction led to an increase in the overall growth rate of the surface. Strontium became preferentially incorporated into the [010] step direction, rather than being homogeneously distributed. The [Sr]/[Ba] s in the newly grown solid was found to correlate directly with that of solutions at [Sr]/[Ba] aq < 5, but not for higher [Sr]/[Ba] aq . Solid composition analyses indicate that thermodynamic equilibrium was not achieved. However, kinetic transport modeling successfully reproduces the shift in growth mechanism.
Pumping of fluids is universally performed by using mechanical or thermal compressors. We demonstrate for the first time a new solid-state molecular pumping mechanism induced by switching the adsorption affinity for a gas through polarization of a chromophore under an applied electric field. Mass spectrometry was used to trace refrigerant gas (difluoromethane) uptake on a chromophore-coated capacitor under applied voltage and subsequent desorption when the voltage and electrode polarization was removed showing an exchange capacity of 0.11 mol of refrigerant per liter of chromophore. Calorimetry confirmed a reversible enthalpy change of 9 Kcal/mol in the polarization-induced sorption-desorption process. Here, the present work establishes the principle and feasibility of non-mechanical molecular pumping, which can be exploited for refrigeration, catalysis, gas separation, among many other potential applications.
Abstract Hydrokinetic turbines extract kinetic energy from moving water to generate renewable electricity, thus contributing to sustainable energy production and reducing reliance on fossil fuels. It has been hypothesized that a duct can accelerate and condition the fluid flow passing the turbine blades, improving the overall energy extraction efficiency. However, no substantial evidence has been provided so far for hydrokinetic turbines. To investigate this problem, we perform a CFD-based optimization study with a blade-resolved Reynolds-averaged Navier–Stokes (RANS) solver to explore the design of a ducted hydrokinetic turbine that maximizes the efficiency of energy extraction. A gradient-based optimization approach is utilized to effectively deal with the high-dimensional design space of the blade and duct geometry, with gradients being calculated through the adjoint method. The final design is re-evaluated through higher-fidelity unsteady RANS (URANS) simulations. Our optimized ducted turbine achieves an efficiency of about 54% over a range of operating conditions, higher than the typical 46% efficiency of unducted turbines.
Serial femtosecond crystallography requires reliable and efficient delivery of fresh crystals across the beam of an X-ray free-electron laser over the course of an experiment. We introduce a double-flow focusing nozzle to meet this challenge, with significantly reduced sample consumption, while improving jet stability over previous generations of nozzles. We demonstrate its use to determine the first room-temperature structure of RNA polymerase II at high resolution, revealing new structural details. Furthermore, the double flow-focusing nozzles were successfully tested with three other protein samples and the first room temperature structure of an extradiol ring-cleaving dioxygenase was solved by utilizing the improved operation and characteristics of these devices.
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Understanding the squeeze out behaviors of liquid films at nanometer scale in an atomic force microscope (AFM) has been a significant interest since the 1990s. We carry out all-atom static-mode AFM simulations in a liquid-vapor molecular dynamics ensemble to investigate the solvation force oscillation and squeeze out mechanisms of a confined linear dodecane fluid between a gold AFM tip and a mica substrate. Solvation force oscillations are found to be associated with the layering transition of the liquid film and unstable jumps of the AFM tip. Detailed structural analyses and molecular animations show that the local permeation of chain molecules and the squeeze out of molecules near the edge of contact promote the layering transition under compression. The confinement-induced slow down dynamics is manifested by the decrease in diffusivity and increase in rotational relaxation times. Furthermore, the persistent diffusive behavior of dodecane chain molecules even in the single-monolayer film is attributed to the chain sliding motions in the film due to the substantial vacancy space and thermal fluctuations.
The influence of baroclinic vorticity production on the unsteady drag coefficient in shock–particle interaction is numerically studied in this work. Numerical simulations are performed for shock–particle interaction utilizing a high–resolution axisymmetric solver for the Euler equations that allows for multi-material interface and shock propagation in both the particle and surrounding medium. We consider an aluminum particle in nitromethane and allow for particle deformation. We compute the vorticity production and unsteady drag coefficient as a function of time to explain the complex physical mechanisms that occur during shock–particle interaction. We observe baroclinic vorticity production as the shock propagates over the particle and find that the vorticity is primarily generated at the surface of the particle. After the passage of the shock over the particle, the generated vortex traverses downstream, thus creating a sharpened particle edge and low pressure on the downstream side of the particle, followed by the trapping of the vortex at the particle edge. These mechanisms lead to the generation of a quasi-steady drag force even after the passage of the shock, thus suggesting the importance of baroclinic vorticity production to the unsteady drag coefficient. Finally, we compute the unsteady drag coefficient for various shock Mach numbers and particle ellipticities.
A new kinetic-theory-based calculation of the self-diffusion coefficient for dense supercritical Lennard-Jones fluids is presented. The mean force kinetic theory, which was recently developed for transport in dense plasmas, is applied for the calculation of diffusion in dense neutral fluids. The calculation only requires the pair distribution function, a quantity that is readily calculable from equilibrium statistical mechanics for many systems, including the Lennard-Jones fluid. The self-diffusion coefficients are compared with calculations from molecular dynamics simulations, and good agreement at high density is demonstrated, even in the vicinity of the solid–fluid coexistence line. A comparison of different kinetic models with molecular dynamics simulations demonstrates that the transport coefficients have important contributions due to particle interaction via a potential of mean force and local correlations, which increase the collision rate. The new calculations compare well to those from free-volume theory and overcome a limitation of this theory that prevents its use in systems that interact via long range monotonic potentials. It is expected that this approach will also apply to other systems, including neutral-plasma and neutral-electrolyte mixtures.
Predicting the functional properties of many molecular systems relies on understanding how atomistic interactions give rise to macroscale observables. However, current attempts to develop predictive models for the structural and thermodynamic properties of condensed-phase systems often rely on extensive parameter fitting to empirically selected functional forms whose effectiveness is limited to a narrow range of physical conditions. Here, we illustrate how these traditional fitting paradigms can be superseded using machine learning. Specifically, we use the results of molecular dynamics simulations to train machine learning protocols that are able to produce the radial distribution function, pressure, and internal energy of a Lennard-Jones fluid with increased accuracy in comparison to previous theoretical methods. The radial distribution function is determined using a variant of the segmented linear regression with the multivariate function decomposition approach developed by Craven et al. [J. Phys. Chem. Lett. 11, 4372 (2020)]. The pressure and internal energy are determined using expressions containing the learned radial distribution function and also a kernel ridge regression process that is trained directly on thermodynamic properties measured in simulation. The presented results suggest that the structural and thermodynamic properties of fluids may be determined more accurately through machine learning than through human-guided functional forms.
Inviscid spatial Landau damping is studied experimentally for the case of oscillatory motion of a two-dimensional vortex about its elliptical equilibrium in the presence of an applied strain flow. Here, the experiments are performed using electron plasmas in a Penning–Malmberg trap. They exploit the isomorphism between the two-dimensional Euler equations for an ideal fluid and the drift-Poisson equations for the plasma, where plasma density is the analog of vorticity. Perturbed elliptical vortex states are created using E x B strain flows, which are generated by applying voltages to electrodes surrounding the plasma. Measurements of spatial Landau damping (also called critical-layer damping) are in agreement with previous studies in the absence of an applied strain, where the damping is due to a resonance between the local fluid motion and the vortex oscillations. Interestingly, the damping rate does not change significantly over a wide range of applied strain rates. This can be accurately predicted from the initial vorticity profile, even though the resonant frequency is reduced substantially due to the applied strain. For higher amplitude perturbations, nonlinear trapping oscillations also exhibit behavior similar to the strain-free case. In principle, higher-order effects of the applied strain, such as separatrix crossing of peripheral vorticity and interactions with harmonics of the fundamental resonance, are expected to change the damping rate. However, this occurs only for conditions that are not realized in the experiments described here. Vortex-in-cell simulations are used to investigate the possible roles of these effects.
Here, we present a quasi-elastic neutron scattering study of liquid deuterium hydride carried out using the Disk Chopper Spectrometer at the National Institute of Standards and Technology. Under saturated vapor pressure, the self-diffusion constant of deuterium hydride obeys an Arrhenius law D = D 0 exp(-E A /k B T), where the prefactor D 0 is given by D 0 = 9.5 ± 1.2 Å 2 /ps and the activation energy is given by E A = 58 ± 2 K. We apply the quantum law of corresponding states to the known diffusion constants of the hydrogen isotopologues. From this application, we estimate that D 0 ≈ 9.1 Å 2 /ps and E A ≈ 75 K in liquid tritium. Young’s theory of quantum-mechanical effects in van der Waals fluids is shown to apply to the diffusion constants of the liquid hydrogens. Our results underscore the importance of nuclear quantum effects in shaping the properties and behavior of the hydrogen isotopologues.
While it has been recognized that a large amplitude incident wave upon a dry fracture can exhibit nonlinear seismic wave scattering due to its stress-dependent mechanical compliance, the impact of pore fluid in the fracture and a fluid-filled poroelastic background medium—features common for fractures in the Earth—are not well understood. As a first step toward an understanding of the nonlinear poroelastic response of elastic waves in fractured media, analytical approximate formulas are used for the amplitude and phase of a normally incident plane wave using a perturbation method, assuming a fluid-filled, highly compliant nonlinear interface embedded in a linear poroelastic solid. The stress-closure behavior of the fracture is modeled by nonlinear, poroelastic displacement-discontinuity boundary conditions (a linear–slip interface). The theory predicts that the static (“Direct current,” or DC) and higher-order-harmonic waves produced by the nonlinear scattering can be greatly reduced by the presence of fluid in the fracture. This, however, depends upon a number of parameters, including fracture compliance, fluid properties (compressibility and viscosity), and the permeability of the background medium, as well as environmental parameters such as the initial fluid pressure and stress acting on the fracture. The static effect produces low-frequency fluid pressure pulses when a finite-duration wave is incident upon the fracture—behavior unique to fluid-filled fractures within a poroelastic medium.
This dataset contains experimental data from fluid injection experiments conducted to investigate the influence of temperature on fracture seismicity. The experiments were performed on granite samples from Utah FORGE. The samples were prepared with a 30-degree inclined fracture and subjected to controlled stress and temperature conditions. Data were collected under three distinct temperature settings: 24 C, 78 C, and 137 C. During the experiments, a constant confining pressure of 10 MPa and a constant shear stress at 80% of the shear strength of the sample were maintained. Pore pressure was incrementally increased at a rate of 300 kPa every three minutes to simulate fluid injection. Temperature was raised rapidly and then stabilized for the duration of each test. The dataset includes shear stress and displacement measurements under each temperature condition, along with supplementary figures illustrating the experimental setup and time-series plots of pressures and temperature.
Acute care of patients with severe infections often relies on systemic administration of pharmaceuticals and monitoring of complex physiological symptoms to identify immune system dysfunction, which can lead to increased mortality. Furthermore, determining disease-specific treatment plans often leads to a delay in patient care. To address this, we proposed an immune modulation system that electrically detects and responds to a patient’s immune system status, creating an agnostic means of treating illness and infection. Two pieces of hardware were developed for this task: a minimally-invasive sensor and a vagus nerve stimulator. Stimulation of the vagus nerve is known to modulate the immune system. The sensor is a microfabricated, silicon-based microneedle array capable of interfacing with interstitial fluid to detect small molecules such as inflammatory proteins (cytokines) and pharmaceuticals (vancomycin). Process optimization to manufacture the needles refined the silicon etch process, creating needle patches long enough to penetrate skin and reach interstitial fluid. The needles were tested for mechanical strength and stability, and did not shatter when inserted into skin models. The needles are coated with a thin film metal, turning them into electrodes for electrochemical sensing of our target molecules. We hybridized aptamers to the surface of the electrode to act as the sensing layer and were able to detect changes in the conformation of the aptamer electrochemically in the presence of the target molecule. The stimulator was a cuff electrode that encircled the vagus nerve. Rodent studies were conducted in which rodents were exposed to an inflammatory event and vagus nerve stimulation (VNS) was applied. It was demonstrated that optimized electrical stimulation of the vagus nerve created measurably different levels of cytokines in blood samples, and certain cytokines released during the inflammatory event were either upregulated or downregulated. In sum, this project successfully developed new platforms and technologies that can, with further development, enable better temporal insight into biomarker changes in the body, letting healthcare providers know of possible immune system dysfunction before they are detected physiologically. We also demonstrated the value of VNS and its possible use in treating immune system response to inflammation and illness.
Conventionally sol-gel spray-on transducers require a high-temperature (> 700 ◦C) sintering process; however, this process can affect the microstructure of the substrate material. For mechanical elbows and valves utilized for fluid transport in the energy sector, the components are designed to have a specific microstructure, and deviations from these specifications can create weak points in the system. For this reason it is important to investigate how the temperature of the deposition process affects the substrate. This paper investigates the effect of high-temperature and low-temperature (< 150 ◦C) processing conditions on the surface composition of the substrate. Furthermore, the resultant transducers from high- and low-temperature fabrication processes are compared to determine if a low-temperature processing method is feasible. For these studies a sol-gel spray-on process is employed to deposit piezoelectric ceramics onto a stainless-steel 316L substrate. Energy-dispersive X-ray spectroscopy is utilized to determine the composition of the substrate surface before and after transducer deposition. Results indicate that the high-temperature processing conditions may alter the surface composition of the metal due to a diffusion of the metal into the ceramic, which results in a metal surface that is bonded to the ceramic. Furthermore, it is shown that low-temperature processing of spray-on transducers is a viable method for transducer fabrication where the resultant transducers meet the industry minimum requirement of 30 dB signalto-noise ratio. In parallel simulation calculations, finite-element method (FEM) studies were performed to model the adhesive strength of the low-temperature processed transducer to the substrate surface. Comparisons between the simulations and experiments suggest that the bond strength is much greater than the commercial gel bonds and closer to hardened epoxy glue bonds. These results indicate that spray-on transducers fabricated under lowtemperature processing conditions are a viable solution for leave-in-place monitoring of structures.
Extensive fibrin deposition in the lungs and altered levels of circulating blood coagulation proteins in COVID-19 patients imply local derangement of pathways that limit fibrin formation and/or promote its clearance. We examined transcriptional profiles of bronchoalveolar lavage fluid (BALF) samples to identify molecular mechanisms underlying these coagulopathies. mRNA levels for regulators of the kallikrein–kinin (C1-inhibitor), coagulation (thrombomodulin, endothelial protein C receptor), and fibrinolytic (urokinase and urokinase receptor) pathways were significantly reduced in COVID-19 patients. While transcripts for several coagulation proteins were increased, those encoding tissue factor, the protein that initiates coagulation and whose expression is frequently increased in inflammatory disorders, were not increased in BALF from COVID-19 patients. Our analysis implicates enhanced propagation of coagulation and decreased fibrinolysis as drivers of the coagulopathy in the lungs of COVID-19 patients.
Mechanism uses differential pressure of condensable fluid against fixed piston to equalize radiant energy on pair of blackbody elements.