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DOE OSTI2024

Translocation of Long-Term Captive Eastern Box Turtles and the Efficacy of Soft-Release: Implications for Turtle Confiscations

Translocation, the human mediated movement of organisms, is an important tool to conserve wildlife populations, and turtles are commonly subject to this management action. One potential source stock for turtle translocations are animals confiscated from the illegal wildlife trade or otherwise held in captivity. There is limited information, however, on the post-release behavior and survival of these animals. We monitored 26 translocated long-term captive (i.e., former pet) Eastern Box Turtles (Terrapene carolina carolina) to assess their survivorship, space use, and the effects of soft-release (penning) on site fidelity. We found long-term captives displayed high first-year survivorship (88.5–92.3%) and similar space use to resident turtles, and that soft-release was effective at reducing post-release movements. Furthermore, our study indicates long-term captive turtles may be suitable for release and provides insights for how confiscated turtles may best contribute to conservation.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2016

Harderian Gland Tumorigenesis: Low-Dose and LET Response

Increased cancer risk remains a primary concern for travel into deep space and may preclude manned missions to Mars due to large uncertainties that currently exist in estimating cancer risk from the spectrum of radiations found in space with the very limited available human epidemiological radiation-induced cancer data. Existing data on human risk of cancer from X-ray and gamma-ray exposure must be scaled to the many types and fluences of radiations found in space using radiation quality factors and dose-rate modification factors, and assuming linearity of response since the shapes of the dose responses at low doses below 100 mSv are unknown. The goal of this work was to reduce uncertainties in the relative biological effect (RBE) and linear energy transfer (LET) relationship for space-relevant doses of charged-particle radiation-induced carcinogenesis. The historical data from the studies of Fry et al. and Alpen et al. for Harderian gland (HG) tumors in the female CB6F1 strain of mouse represent the most complete set of experimental observations, including dose dependence, available on a specific radiation-induced tumor in an experimental animal using heavy ion beams that are found in the cosmic radiation spectrum. However, these data lack complete information on low-dose responses below 0.1 Gy, and for chronic low-dose-rate exposures, and there are gaps in the LET region between 25 and 190 keV/μm. In this study, we used the historical HG tumorigenesis data as reference, and obtained HG tumor data for 260 MeV/u silicon (LET ~70 keV/μm) and 1,000 MeV/u titanium (LET ~100 keV/μm) to fill existing gaps of data in this LET range to improve our understanding of the dose-response curve at low doses, to test for deviations from linearity and to provide RBE estimates. Animals were also exposed to five daily fractions of 0.026 or 0.052 Gy of 1,000 MeV/u titanium ions to simulate chronic exposure, and HG tumorigenesis from this fractionated study were compared to the results from single 0.13 or 0.26 Gy acute titanium exposures. Theoretical modeling of the data show that a nontargeted effect model provides a better fit than the targeted effect model, providing important information at space-relevant doses of heavy ions.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗

DOE OSTI2022

rmap: An R package to plot and compare tabular data on customizable maps across scenarios and time

`rmap` is an R package that allows users to easily plot tabular data (CSV or R data frames) on maps without any Geographic Information Systems (GIS) knowledge. Maps produced by `rmap` are `ggplot` objects and thus capitalize on the flexibility and advancements of the `ggplot2` package and all elements of each map are thus fully customizable. Additionally `rmap` automatically detects and produces comparison maps if the data has multiple scenarios or time periods as well as animations for time series data. Advanced users can load their own shapefiles if desired. `rmap` comes with a range of pre-built color palettes but users can also provide any `R` color palette or create their own as needed. Four different legend types are available to highlight different kinds of data distributions. The input spatial data can be both gridded or polygon data. `rmap` is desgined in particular for comparing spatial data across scenarios and time periods and comes preloaded with standard country, state, and basin maps as well as custom maps compatible with the Global Change Analysis Model (GCAM) spatial boundaries. `rmap` has a growing number of users and its products have been used in multiple multisector dynamics publications as well as a required dependency in other R packages such as `rfasst` and `metis`. `rmap's` automatic processing of tabular data using pre-built map selection, difference map calculations, faceting, and animations offers unique functionality which makes it a powerful and yet simple tool for users looking to explore multi-sector, multi-scenario data across space and time.

58 GEOSCIENCES↗

DOE OSTI2015

Field Soil Water Retention of the Prototype Hanford Barrier and Its Variability with Space and Time

Engineered surface barriers (or covers) are used to isolate underlying contaminants from water, plants, animals, and humans. To understand the flow processes within a barrier and the barrier's ability to store and release water, the field hydraulic properties of the barrier need to be known. A multiyear test of the evapotranspiration (ET) barrier at the US Department of Energy's Hanford Site in the southeast of the state of Washington has yielded in situ soil water content and pressure data from multiple locations for a 9‐yr period, offering the opportunity to estimate soil water retention properties at different locations and times. The upper 2‐m layer of the ET barrier is a silt loam, and the top 1 m also contains 15% (w/w) pea gravel. Within this layer, valid monitoring data from 1995 to 2003 for four depths at 12 monitoring stations were used to determine the field water retention of the silt loam, with and without gravel. The data covered a wide range of wetness, from near saturation to the permanent wilting point, and each retention curve contained 51 to 96 data points. The data were described well with the commonly used van Genuchten water retention model. It was found that the spatial variation of the saturated and residual water content and the pore size distribution parameter was relatively small, while that of the van Genuchten α was relatively large. The effects of spatial variability of the retention properties appeared to be larger than the combined effects of added pea gravel and plant roots on the properties. Neither the primary wetting process in the winter season nor the drying process in the summer season nor time had a detectable effect on the water retention of the silt loam barrier.

Zhang, Z. Fred↗

DOE OSTI2015

Dose Calculation Methodology and Data for Solid Waste Performance Assessment and Composite Analysis at the Savannah River Site

This report provides a detailed description of the methodology developed to perform dose calculations for E-Area Low Level Waste Facility Performance Assessments and Savannah River Site Composite Analyses. Chapters 2 – 8 give a complete set of equations to be used to calculate dose for individual exposure pathways. The first set of dose scenarios assume that a member of the public establishes residence near the waste site and uses contaminated groundwater or contaminated surface water for personal consumption and to irrigate a garden and pasture where produce and farm animals are raised. Products from the garden and farm animals are used for personal consumption. This scenario applies to both E-Area Performance Assessments and Savannah River Site Composite Analyses. General dose exposure pathways for the resident farmer scenario are: 1. Ingestion pathways described in Chapter 2, 2. Inhalation pathways described in Chapter 3, 3. External exposure pathways described in Chapter 4, and 4. Recreational pathways described in Chapter 5 (Composite Analysis only). Doses from all of the above pathways are directly related to the contaminant concentration in the water. Additional dose scenarios considered for E-Area Performance Assessment assume that an inadvertent intruder encroaches on the waste disposal site after loss of institutional control. General dose exposure pathways considered for the inadvertent intruder are: 1. Ingestion pathways described in Chapter 6, 2. Inhalation pathways described in Chapter 7, and 3. External exposure pathways described in Chapter 8. Doses from all of the intruder pathways are directly related to the contaminant concentration in the buried waste. Special dose considerations related to human consumption of meat and dairy, and treatment of tritium in dose calculations are discussed in Chapter 9. Chapter 10 describes an Excel database named “Radionuclide, Element and Dose Parameter Data Package” that has been created to provide a system for maintaining the data required to perform radionuclide transport and dose calculations. This data includes: Isotope physical parameters and radioactive decay data needed for both transport and dose calculations, Isotope-specific dose coefficients and soil shielding factors associated with exposure pathways, Radionuclide drinking water concentration limits either published by the Environmental Protection Agency or derived from internal dose coefficients to meet the groundwater protection requirements in Department of Energy Order 435.1, Element-specific bio-transfer factors used in dose calculations, Dose equations and values of physical parameters and human factors used in dose calculations, and Key physical constants used in dose calculations.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2015

Prototype Laboratory Concept

The prototype laboratory concept was developed to simplify the laboratory design process, and should be considered for use as a new laboratory design methodology. Many developing countries lack adequate public and animal health laboratories and typically do not have the economic means and the design and construction expertise to build a laboratory on their own. These countries rely on international sponsors to provide the funds necessary to design and construct a laboratory. However, these international sponsors are often located far away, making travel back and forth difficult, which leads to an increase in overall costs and delays for the project. The prototype laboratory concept and design methodology were developed to streamline the design process, saving time and money, while also minimizing the number of errors that typically arise using a traditional design process by providing well considered design decisions in advance of the project. By solving numerous detailed design issues early, this methodology will allow the time, attention and energies of the design team to be focused on addressing the specific needs of the end users, the unique design challenges related to a given site and scientific program, and the biosafety and biosecurity risks associated with the scientific activities planned to be conducted in the facility. While the concept could be expanded to cover other types of laboratories to date, it has primarily focused on supporting the implementation of good laboratory design best practices for infectious disease diagnostic and research laboratories for both the human and animal health sectors. This report presents the laboratory design concept and details associated with the modular layouts. It builds on the work previously provided in the interim prototype laboratory concept report delivered to the Cooperative Biological Engagement Program (CBEP) at the Defense Threat Reduction Agency (DTRA) in 2014. This report includes a number of revised and additional module layouts, more detailed information regarding laboratory finishes and equipment, engineering service information, electrical and lighting layouts, plumbing service information and two mechanical service options for each prototype module. Additionally, this report also includes a description of a cost estimating tool that will accompany this report and allow funding agencies to generate an approximate cost for the construction of a laboratory that utilizes the prototype laboratory concept modules. This report is intended to serve a complete document and includes all relevant information from the 2014 prototype laboratory concept report.

42 ENGINEERING↗

DOE OSTI2016

Development of Value-Added Products from Residual Algae to Biomass

DOE Award # EE0000393 was awarded to fund research into the development of beneficial uses of surplus algal biomass and the byproducts of biofuel production. At the time of award, Sapphire’s intended fuel production pathway was a fairly conventional extraction of lipids from biomass, resulting in a defatted residue which could be processed using anaerobic digestion. Over the lifetime of the award, we conducted extensive development work and arrived at the conclusion that anaerobic digestion presented significant technical challenges for this high-nitrogen, high-ash, and low carbon material. Over the same timeframe, Sapphire’s fuel production efforts came to focus on hydrothermal liquefaction. As a result of this technology focus, the residue from fuel production became unsuitable for either anaerobic digestion (or animal feed uses). Finally, we came to appreciate the economic opportunity that the defatted biomass could represent in the animal feed space, as well as understanding the impact of seasonal production on a biofuels extraction plant, and sought to develop uses for surplus biomass produced in excess of the fuel production unit’s capacity.

09 BIOMASS FUELS↗

DOE OSTI2016

Effects of EMF Emissions from Cables and Junction Boxes on Marine Species

Studies have shown that diverse aquatic species are electrosensitive. Many fishes, and marine mammals, can either detect, navigate by, or are affected by electromagnetic fields (EMF) with various sensitivities, and their behavior may be impacted by unnatural EMF emissions in the water column. Sharks, rays and skates are known to have the highest sensitivity to electric fields. Electric field emissions in the range 0.5–100 micro volt/m appear to attract them, and emissions over 100 micro volt/m to repulse them. A marine hydrokinetic MHK device will have multiple components and associated multiple submarine cables on the seafloor and running through the water column and would potentially increase the level of EMF emissions to which the marine species at the site may be exposed to. There are therefore concerns amongst stakeholders that EMF emissions associated with MHK devices and their components may act as barriers to species migration, cause disorientation, change community compositions and ecosystems, and that they may attract sharks, leading to a local increase in the risk of shark attacks. However, field data to validate and model potential relationships between observed responses and the EMF emissions in situ are sparse. A program of experimental field surveys were conducted off the coast of South Florida, USA to characterize the electromagnetic field (EMF) emissions in the water column from a submarine cable, and to monitor for responses of local aquatic species. The field surveys were conducted at the South Florida Ocean Measurement Facility (SFOMF) off Fort Lauderdale, which is a cabled offshore in-water navy range. It consists of multiple active submarine power cables and a number of junction boxes, with the capability to transmit AC/DC power at a range of strength and frequencies. The site includes significant marine life activities and community structure, including highly mobile species, such as sharks, stingrays, mammals and turtles. SFOMF therefore typifies a setting representative of an offshore location where a MHK device may be sited. Background electromagnetic field (EMF) levels and EMF emissions due to submarine cables were measured using a custom E-field sensor and a commercial magnetometer deployed from an autonomous underwater vehicle (AUV) at various fixed altitudes above the seafloor. EMF signatures detected from power cables and junction boxes are contrasted against ambient background levels and other EMF sources. The potential responses of local marine species were observed at selected representative locations using divers on SCUBA, complemented with fixed cameras on the sea bottom and by a set of video cameras mounted on the AUV. The objectives of the study were: 1) to characterize the EMF emission levels associated with submarine cables 2) to monitor potential responses of aquatic animals to the emissions and 3) to develop an associated database of field observations. As control, observations of EMF levels and in situ marine species were conducted with power in the cable turned off. Good quality measurements of EMF emissions were obtained using the mobile AUV platform and the data from the surveys were used to develop contour maps of the EMF levels in the water column above the live cable as well as to provide information about how the field decays away from the cable. The measurements show good agreement with theoretical models of the how EMF levels decay away from the cable in deep and shallow water environment. Electric fields in excess of 200µV/m were measured in the vicinity of the cable during the power on state. Quarterly surveys by SCUBA divers were conducted, using point and transect count methods, over a period of one year at three locations, one at a shallow site where the water depth is approximately 5m, and the other at the Barracuda Reef where the water depth is approximately 10m. The sampling results were analyzed to determine if the presence of an SFOMF generated EMF alters: (1) abundance, species richness, and assemblage structure of coral reef fishes, (2) the behavior of fishes including elasmobranchs, and (3) the distribution of marine turtles and mammals. Diver observations were also used in attempt to discern if there were any noticeable organismal responses during the transitional period between ambient OFF to energized AC or DC power states, and video footage was intended to augment the in-situ visual survey data and aid in interpretation of the results. Comparisons are provided between observation datasets between the three sites and between the point and transect count methods. Presence of several individual elasmobranch species, including sharks and stingrays, were recorded during the surveys. No apparent effect on richness could be discerned between the power on and off states. No apparent sudden animal movements were observed during transitions between power states.

16 TIDAL AND WAVE POWER↗

DOE OSTI2016

Assessment of Potential Impact of Electromagnetic Fields from Undersea Cable on Migratory Fish Behavior

The US Department of Energy and US Department of the Interior, Bureau of Ocean Energy Management commissioned this study to address the limited scientific data on the impacts of high voltage direct current cables on aquatic biota, in particular migratory species within the San Francisco Bay. Empirical evidence exists that marine animals perceive and orient to local distortions in the earth’s main geomagnetic field magnetic field. The electromagnetic fields (EMF) generated by the cables that carry electricity from hydrokinetic energy sources to shore-based power stations may produce similar local distortions in the earth’s main field. Concern exists that animals that migrate along the continental shelves might orient to the EMF from the cables, and move either inshore or offshore away from their normal path. The Trans Bay Cable (TBC) is a ±200-kilovolt (kV), 400 MW 85-km long High Voltage Direct Current (DC) buried transmission line linking Pittsburg, CA with San Francisco, CA (SF) through the San Francisco Bay. The study addresses the following specific questions based on measurements and projections of the EMF produced by an existing marine cable, the TBC, in San Francisco Bay. Specifically, does the presence of EMF from an operating power cable alter the behavior and path of bony fishes and sharks along a migratory corridor? Does the EMF from an operating power cable guide migratory movements or pose an obstacle to movement? To meet the main study objectives several activities needed to be carried out: 1) modeling of the magnetic fields produced by the TBC, 2) assessing the migratory impacts on Chinook salmon smolts (Oncorhynchus tshawytscha) and green sturgeon (Acipenser medirostris) as a result of local magnetic field distortions produced by bridge structures and 3) analyzing behavioral responses by migratory Chinook salmon and green sturgeon to a high-voltage power cable. To meet the first objective, magnetic field measurements were made using two submerged Geometrics magnetometers towed behind a survey vessel in four locations in the San Francisco estuary along profiles crossing the cable path. We applied basic formulas to describe magnetic field from a DC cable summed vectorially with the background geomagnetic field (in the absence of other sources that would perturb the ambient field) to derive characteristics of the cable not immediately or otherwise observable. The magnetic field profiles of 76 survey lines were regressed against the measured fields, representing eight days of measurement. Many profiles were dominated by field distortions caused by bridge structures or other submerged objects, and the cable contribution to the field was not detectable. The regressions based on fundamental principles (Biot Savart law) and the vectorial summation of cable and geomagnetic fields provide estimates of cable characteristics consistent with plausible expectations. For the second objective, detailed gradiometer survey were examined. Distortions in the earth’s main field produced by bridges across the estuary were much greater than those from the TBC. The former anomalies exceeded the latter by an order of magnitude or more. Significant numbers of tagged Chinook salmon smolts migrated past bridges, which produced strong magnetic anomalies, to the Golden Gate Bridge, where they were recorded by dual arrays of acoustic tag-detecting monitors moored in lines across the mouth of the bay. Adult green sturgeon successfully swam upstream and downstream through the estuary on the way to and from their spawning grounds. Hence, the large anomalies produced by the bridges that run perpendicular to these migration routes do not appear to present a strong barrier to the natural seasonal movement patterns of salmonid smolts and adult green sturgeon. Finally, to assess the behavioral responses by migratory Chinook salmon and green sturgeon to a high- voltage power cable - the potential impacts effect of the TBC on fishes migrating through the San Francisco Estuary were examined. These included late-fall run Chinook salmon smolts (Oncorhynchus tshawytscha) that migrate downstream through the San Francisco Estuary to the Pacific Ocean and adult green sturgeon (Acipenser medirostris), which migrate upstream from the ocean through the estuary to their spawning habitat in the upper Sacramento River and return to the ocean after spawning occurs. Our results indicate Chinook salmon smolts may be attracted to the cable after activation (more cable location crossings, more detections at Bay Bridge, high importance of distance to cable in predicting fish location), but are not impeded from successfully migrating through the San Francisco Bay (similar proportions of successful exits, faster transit rates). Cable activity had opposite effects on outbound and inbound green sturgeon migrations: outbound migrations had significantly longer transit times while inbound migrations had significantly shorter migration times. However, the proportion of green sturgeon that successfully migrated through the San Francisco Bay was not strongly impacted after cable activation for either migration type. Based on the work, we provide the following conclusions: 1) calculations of magnetic fields for assessment of marine life can be performed; however, local anomalies in the fields resulting from submerged structures require validation of such calculations through collection of ambient DC magnetic field data, 2) the large anomalies produced by the bridges that run perpendicular to these migration routes do not appear to present a strong barrier to the natural seasonal movement patterns of salmonid smolts and adult green sturgeon and 3) Chinook salmon smolts may be attracted to the activated cable based on analysis of cable crossing, misdirections, and first presence at the array data, however, the cable activation does not appear to change the proportion of smolts that successfully migrate through the San Francisco Bay. Cable activation impacts inbound and outbound migrating adult green sturgeon: travel time was increased for outbound migrations but decreased for inbound migrations. However, cable activation did not appear to impact the success of either migration type in this species.

63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN↗

DOE OSTI2016

OIE Collaborating Centre for Biorisk Management Strategic Plan.

Due to efforts by individual nations and the international community to monitor and control natural occurring outbreaks of animal and zoonotic diseases, any number and variety of select agents and especially dangerous pathogens can be found at diagnostic laboratories around the world. Diagnostic testing is a crucial aspect of disease surveillance, but the organized collection and testing of diagnostic samples from the animal and human population at laboratories has created a repository of disease agents and toxins that could cause serious harm if released or acquired by nefarious means. The delicate balance between public health disease surveillance and the management of biorisks at facilities utilized in surveillance is a necessary goal of veterinary public health.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2018

Analysis of Radiological Impacts to Terrestrial Biota in Support of Environmental Assessment for Use of DOE-Owned High-Assay Low-Enriched Uranium Stored at Idaho National Laboratory

There are many species of plants and animals (biota) on the INL Site and facilities such as INTEC and MFC have surrounding habitat supporting resident plant and animal populations. Consequently, radionuclide releases from the HALEAU processing facilities could pose a potential radiological impact to nearby flora and fauna populations. Therefore, the RESRAD-BIOTA (Version 1.8) computer code (http://resrad.evs.anl.gov/codes/resrad-biota/) was used to assess the impact of radiation exposures to terrestrial biota resulting from soil contaminated by airborne releases from the HALEAU processing facilities proposed for the INTEC and/or MFC complexes. The contaminated soil subsequently results in contamination in air and in different food sources used by biota. Both external radiation and internal radiation are considered in the dose evaluation.

99 GENERAL AND MISCELLANEOUS↗

DOE OSTI2019

B20 to B100 Blends as Heating Fuels

Biodiesel is mono-alkyl esters of long chain fatty acids derived from naturally occurring oils or fats which conform to ASTM D6751 specifications. Biodiesel refers to the pure fuel before blending with traditional distillate type petroleum-based fuels such as diesel fuel or home heating oil (petrodiesel). Biodiesel blends are denoted as, "BXX" with "XX" representing the percentage of biodiesel by volume contained in the blend (i.e.: B20 is 20% biodiesel, 80% petrodiesel). Biodiesel offers a near-term opportunity to displace petroleum-based heating oil with a low carbon, renewable fuel. Biodiesel can be made from a variety of domestically produced oils and fats such as commonly available vegetable oils or animal fats as well as other oils such as used frying oils, reclaimed distillers corn oil from ethanol plants, algal oils, etc. In the US, about half the biodiesel is made from soybean oil, with the remainder about evenly split between canola oil, animal fats, used cooking oils, and distillers corn oil.

09 BIOMASS FUELS↗

DOE OSTI2019

Dose Calculation Methodology and Data for Solid Waste Performance Assessment and Composite Analysis at the Savannah River Site

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2019

Detection of Upwind Pathogens Using Aircraft and Ground Stations

The first reported investigations of microorganism occurrence in the air can be traced back to early 19th century. Since then the study of bioaerosols have come a long way, however, it remains a poorly understood area(Després et al. 2012). The actual identity, diversity, and abundance of distinct types of bioaerosol particles as well as their temporal and spatial variability are not well characterized. Bioaerosols play a key role in the dispersal of reproductive units from plants and microbes (pollen, spores, etc.), for which the atmosphere enables transport over geographic barriers and long distances(FröhlichNowoisky et al. 2016). The dispersal of plant, animal, and human pathogens and allergens has major implications for agriculture and public health. We hypothesized that airborne microbes can reach the upper atmosphere (i.e., above the boundary layer ~2 km in altitude) and deliver disease into downwind destinations. We utilized a unique set of bioaerosol samples from atmospheric aircraft observatories (NASA) to study the microbial diversity, abundance, and viability of bioaerosols reaching California during the springtime when the jet stream delivers the largest amount of Asian transpacific aerosols to N. America. We collaborated with a NASA Ames with unique access to upper troposphere and lower stratosphere bioaerosol samples on the Pacific Coast of California. We analyzed the aerosol samples using microbiological techniques, shotgun metagenomic sequencing and advanced bioinformatic tools to identify the viable and total microbial species that were detected. A number of bacterial and fungal species were identified. This study provided a deeper understanding of the microbial species that can survive in the upper atmospheric conditions. This study set the foundation for future studies on better understanding of the potential impact of airborne microbes on disease transmission affecting human, animal, or crop health.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

Site-wide occupancy assessment using camera traps for seven mammalian species at Los Alamos National Laboratory

Los Alamos National Laboratory (LANL or Laboratory) is committed to solving national security challenges through scientific excellence and has been serving the nation and northern New Mexico for over 70 years. Being located on the Pajarito Plateau in the eastern flanks of the Jemez Mountains, the Laboratory is surrounded by a rich diversity of plants and animals. It is common to see many different species of wildlife on Laboratory property; however, sometimes interactions with wildlife can be negative. Vehicle accidents with wildlife have become a common occurrence. With the current and ongoing expansion of the Laboratory on the Pajarito Plateau, it has the potential to further impact wildlife movement including large game species. Local agencies and tribal Pueblos rely on large game species and do not want these species to be restricted from moving across property boundaries. Temporal and spatial aspects of where wildlife occur on the site is a phenomena that is either not well understood in uncommon species or needs periodic reevaluation for common species. Estimating the distribution of multiple species across the landscape provides wildlife biologists with crucial information for monitoring and conserving animal populations in a particular area. Utilizing motion activated wildlife cameras, also known as camera traps, to monitor wildlife populations has become an essential tool for biologists. Camera traps are non-invasive and cost-effective and can document multiple elusive or uncommon wildlife species, such as carnivores, simultaneously. Occupancy modeling provides a flexible framework for the analysis of the distribution for multiple wildlife species. It explicitly recognizes whether a species is spatially common or rare (occupancy = ψ) and if that species is easy or hard to detect (detection probability = p ). Multispecies and multi-season occupancy models can detect trends in species occupancy because individual species may vary in seasonal movements, detection probability, and transition rates between habitats. In this study, we assessed the site as a whole to ascertain when and where medium and large mammal species are present. Understanding wildlife patterns at the Laboratory will better inform future management decisions regarding land use and development strategies. We placed motion activated wildlife cameras in a random systematic sampling design and used these data to create occupancy models. We tested for differences in single-species occupancy and detection probability by season of mammal species captured on 20 camera traps placed across the Laboratory in a 40 mi² (103 km²) area. We focus the interpretation of our findings on seven mammal species found during this study. They are Rocky Mountain elk ( Cervus canadensis nelsoni ; hereafter “elk”), mule deer ( Odocoileus hemionus ; hereafter “deer”), mountain lion ( Puma concolor ; hereafter “lion”), American black bear ( Ursus americanus ; hereafter “bear”), coyote ( Canis latrans ), bobcat ( Lynx rufus ), and gray fox ( Urocyon cinereoargenteus ; hereafter “fox”).

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

2020 State of the Science Report, Chapter 2: Marine Renewable Energy: Environmental Effects and Monitoring Strategies

As we learn more about interactions between marine renewable energy (MRE) devices, the animals and habitats near them, and the oceanographic processes with which they interact, we need to clarify the language used to discuss those interactions. For example, if an MRE device or system negatively affected a number of animals, we could say that the device or the system of foundations, anchors, and mooring lines had an impact on the population, and take steps to avoid the impact or, in some cases, mitigate the impact. However, at this stage in MRE development, there are few, if any, cases in which a negative impact has been observed or measured. Instead, we are developing the building blocks that support investigations of interactions and potential impacts. https://tethys.pnnl.gov/publications/state-of-the-science-2020-chapter-2-environmental-effects

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

AniMACCS User Guide

This SAND Report provides an overview of AniMACCS, the animation software developed for the MELCOR Accident Consequence Code System (MACCS). It details what users need to know in order to successfully generate animations from MACCS results, to include information on the capabilities, requirements, testing, limitations, input settings, and problem reporting instructions for AniMACCS version 1.3. Supporting information is provided in the appendices, such as guidance on required input files using both WinMACCS and running MACCS from the command line. This page left blank

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2020

Large Game Movement between Los Alamos National Laboratory and Pueblo de San Ildefonso

Movement by wildlife is a fundamental process that allows for the distribution of animal populations. The level and scale of movement varies by species, time of year, and whether long-distance migration plays a role in a species’ life history. Many species do not have regular migration patterns, but still have movement patterns essential to their survival. Changes in the environment such as wildfires, drought, and anthropogenic activities have the potential to influence the movements of animals.

99 GENERAL AND MISCELLANEOUS↗