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At least 1,639 records · Page 91

A Principled Framework to Assess the Information-Theoretic Fitness of Brain Functional Sub-Circuits

In systems and network neuroscience, many common practices in brain connectomic analysis are often not properly scrutinized. One such practice is mapping a predetermined set of sub-circuits, like functional networks (FNs), onto subjects’ functional connectomes (FCs) without adequately assessing the information-theoretic appropriateness of the partition. Another practice that goes unchallenged is thresholding weighted FCs to remove spurious connections without justifying the chosen threshold. This paper leverages recent theoretical advances in Stochastic Block Models (SBMs) to formally define and quantify the information-theoretic fitness (e.g., prominence) of a predetermined set of FNs when mapped to individual FCs under different fMRI task conditions. Our framework allows for evaluating any combination of FC granularity, FN partition, and thresholding strategy, thereby optimizing these choices to preserve the important topological features of the human brain connectomes. By applying to the Human Connectome Project with Schaefer parcellations at multiple levels of granularity, the framework showed that the common thresholding value of 0.25 was indeed information-theoretically valid for group-average FCs, despite its previous lack of justification. Our results pave the way for the proper use of FNs and thresholding methods, and provide insights for future research in individualized parcellations.

Duong-Tran, Duy (ORCID:0009000944967575)↗

Error Modeling of Multi-baseline Optical Truss: Application to SIM Metrology Truss Field Dependent Error - Part II

The current design of the Space Interferometry Mission (SIM) employs a 19 laser-metrology-beam system (also called L19 external metrology truss) to monitor changes of distances between the fiducials of the flight system's multiple baselines. The function of the external metrology truss is to aid in the determination of the time-variations of the interferometer baseline. The largest contributor to truss error occurs in SIM wide-angle observations when the articulation of the siderostat mirrors (in order to gather starlight from different sky coordinates) brings to light systematic errors due to offsets at levels of instrument components (which include comer cube retro-reflectors, etc.). This error is labeled external metrology wide-angle field-dependent error. Physics-based model of field-dependent error at single metrology gauge level is developed and linearly propagated to errors in interferometer delay. In this manner delay error sensitivity to various error parameters or their combination can be studied using eigenvalue/eigenvector analysis. Also validation of physics-based field-dependent model on SIM testbed lends support to the present approach. As a first example, dihedral error model is developed for the comer cubes (CC) attached to the siderostat mirrors. Then the delay errors due to this effect can be characterized using the eigenvectors of composite CC dihedral error. The essence of the linear error model is contained in an error-mapping matrix. A corresponding Zernike component matrix approach is developed in parallel, first for convenience of describing the RMS of errors across the field-of-regard (FOR), and second for convenience of combining with additional models. Average and worst case residual errors are computed when various orders of field-dependent terms are removed from the delay error. Results of the residual errors are important in arriving at external metrology system component requirements. Double CCs with ideally co-incident vertices reside with the siderostat. The non-common vertex error (NCVE) is treated as a second example. Finally combination of models, and various other errors are discussed.

comer cube retro-reflector↗

Terahertz local oscillator for the Microwave Limb Sounder on the Aura satellite

The Microwave Limb Sounder on the Aura satellite has a radiometer at 2.5 THz to perform global mapping of OH in the atmosphere. The OH radiometer utilizes two Schottky-diode mixers pumped by an optically pumped THz gas laser local oscillator. The laser was first turned on in space on July 22, 2004, and has performed without issue for more than 30 months. The specifications, design, and modeling of this 2.5 THz laser local oscillator are presented here, along with some of the important design validation and test results.

Pickett, Herbert M.↗

Visualizing Iron Deposition in Multiple Sclerosis Cadaver Brains

To visualize and validate iron deposition in two cases of multiple sclerosis using rapid scanning X-Ray Fluorescence (RS-XRF) and Susceptibility Weighted Imaging (SWI). Two (2) coronal cadaver brain slices from patients clinically diagnosed with multiple sclerosis underwent magnetic resonance imaging (MRI), specifically SWI to image iron content. To confirm the presence of iron deposits and the absence of zinc-rich myelin in lesions, iron and zinc were mapped using RS-XRF. MS lesions were visualized using FLAIR and correlated with the absence of zinc by XRF. XRF and SWI showed that in the first MS case, there were large iron deposits proximal to the draining vein of the caudate nucleus as well as iron deposits associated with blood vessels throughout the globus pallidus. Less iron was seen in association with lesions than in the basal ganglia. The presence of larger amounts of iron correlated reasonably well between RS-XRF and SWI. In the second case, the basal ganglia appeared normal and acute perivascular iron deposition was absent. Perivascular iron deposition is seen in some but not all MS cases, giving credence to the use of SWI to assess iron involvement in MS pathology in vivo.

59 BASIC BIOLOGICAL SCIENCES↗

Mapping Snow Grain Size over Greenland from MODIS

This paper presents a new automatic algorithm to derive optical snow grain size (SGS) at 1 km resolution using Moderate Resolution Imaging Spectroradiometer (MODIS) measurements. Differently from previous approaches, snow grains are not assumed to be spherical but a fractal approach is used to account for their irregular shape. The retrieval is conceptually based on an analytical asymptotic radiative transfer model which predicts spectral bidirectional snow reflectance as a function of the grain size and ice absorption. The analytical form of solution leads to an explicit and fast retrieval algorithm. The time series analysis of derived SGS shows a good sensitivity to snow metamorphism, including melting and snow precipitation events. Preprocessing is performed by a Multi-Angle Implementation of Atmospheric Correction (MAIAC) algorithm, which includes gridding MODIS data to 1 km resolution, water vapor retrieval, cloud masking and an atmospheric correction. MAIAC cloud mask (CM) is a new algorithm based on a time series of gridded MODIS measurements and an image-based rather than pixel-based processing. Extensive processing of MODIS TERRA data over Greenland shows a robust performance of CM algorithm in discrimination of clouds over bright snow and ice. As part of the validation analysis, SGS derived from MODIS over selected sites in 2004 was compared to the microwave brightness temperature measurements of SSM\I radiometer, which is sensitive to the amount of liquid water in the snowpack. The comparison showed a good qualitative agreement, with both datasets detecting two main periods of snowmelt. Additionally, MODIS SGS was compared with predictions of the snow model CROCUS driven by measurements of the automatic whether stations of the Greenland Climate Network. We found that CROCUS grain size is on average a factor of two larger than MODIS-derived SGS. Overall, the agreement between CROCUS and MODIS results was satisfactory, in particular before and during the first melting period in mid-June. Following detailed time series analysis of SGS for four permanent sites, the paper presents SGS maps over the Greenland ice sheet for the March-September period of 2004.

Lyapustin, Alexei↗

An energy-dependent map of the X-ray emission of the Perseus cluster

Results are discussed for X-ray scans of the Perseus cluster with the SAS 3 slat detectors. Counting rates in two broadband channels (1.5 to 5.5 keV and 5.5 to 15.5 keV) are compared as a function of the instrument scan angle measured from the center of emission, and it is found that the emission in the higher energy range is broader in extent. Tests for a systematic energy-dependent error in the background demonstrate that the discovered energy dependence of the Perseus cluster emission is valid. Iron line emission is determined by two methods, various models are fitted to the data, and the total cluster emission in the two energy ranges is computed. The iron line emission is determined to be 0.003 photon/sq cm per sec. It is concluded that the diffuse emission increases in the range from 1.5 to 15.5 keV within the bounds of a model involving a point source with a radius not exceeding about 3 arcmin plus a diffuse source.

Ulmer, M. P.↗

An expanded role for the transcription factor WRINKLED1 in the biosynthesis of triacylglycerols during seed development

The transcription factor WRINKLED1 ( WRI1 ) is known as a master regulator of fatty acid synthesis in developing oilseeds of Arabidopsis thaliana and other species. WRI1 is known to directly stimulate the expression of many fatty acid biosynthetic enzymes and a few targets in the lower part of the glycolytic pathway. However, it remains unclear to what extent and how the conversion of sugars into fatty acid biosynthetic precursors is controlled by WRI 1. To shortlist possible gene targets for future in-planta experimental validation, here we present a strategy that combines phylogenetic foot printing of cis-regulatory elements with additional layers of evidence. Upstream regions of protein-encoding genes in A. thaliana were searched for the previously described DNA-binding consensus for WRI1, the ASML1/WRI1 (AW)-box. For about 900 genes, AW-box sites were found to be conserved across orthologous upstream regions in 11 related species of the crucifer family. For 145 select potential target genes identified this way, affinity of upstream AW-box sequences to WRI1 was assayed by Microscale Thermophoresis. This allowed definition of a refined WRI1 DNA-binding consensus. We find that known WRI1 gene targets are predictable with good confidence when upstream AW-sites are phylogenetically conserved, specifically binding WRI1 in the in vitro assay, positioned in proximity to the transcriptional start site, and if the gene is co-expressed with WRI1 during seed development. When targets predicted in this way are mapped to central metabolism, a conserved regulatory blueprint emerges that infers concerted control of contiguous pathway sections in glycolysis and fatty acid biosynthesis by WRI1. Several of the newly predicted targets are in the upper glycolysis pathway and the pentose phosphate pathway. Of these, plastidic isoforms of fructokinase ( FRK 3) and of phosphoglucose isomerase ( PGI 1) are particularly corroborated by previously reported seed phenotypes of respective null mutations.

59 BASIC BIOLOGICAL SCIENCES↗

A high-order adaptive algorithm for multispecies gaseous flows on mapped domains

We report a fourth-order accurate finite-volume method is developed and verified for solving strongly nonlinear, time-dependent, compressible, thermally perfect, and multispecies gaseous flows on mapped grids that are adaptively refined in space and time. The algorithm introduces a new scheme for numerical flux calculations in order to cope with the nonlinear, spatially and temporally varying thermodynamic and transport properties of the gaseous mixture. The fourth-order numerical error convergence and solution accuracy are verified using Couette flow, species mass diffusion bubble, and vortex convection and diffusion problem. The thermally perfect, multispecies functionality is validated using a one-dimensional shock tube and two-dimensional shock box problem. Results are obtained for the Mach reflection problem where a strong shock propagates in the multispecies gaseous flow along a ramp and are compared to the solution of the shock propagation in a single species, calorically perfect, gaseous flow over the same ramp. The validated algorithm is then applied to simulate a relatively complex flow configuration to examine the secondary flow mixing due to the double air jets along with the main inlet where a premixed fuel mixture flows in. Future investigations will focus on three-dimensional configurations.

42 ENGINEERING↗

Multi-dimensional incoherent Thomson scattering system in PHAse Space MApping (PHASMA) facility

A multi-dimensional incoherent Thomson scattering diagnostic system capable of measuring electron temperature anisotropies at the level of the electron velocity distribution function (EVDF) is implemented on the PHAse Space MApping facility to investigate electron energization mechanisms during magnetic reconnection. This system incorporates two injection paths (perpendicular and parallel to the axial magnetic field) and two collection paths, providing four independent EVDF measurements along four velocity space directions. For strongly magnetized electrons, a 3D EVDF comprised of two characteristic electron temperatures perpendicular and parallel to the local magnetic field line is reconstructed from the four measured EVDFs. As a result, validation of isotropic electrons in a single magnetic flux rope and a steady-state helicon plasma is presented.

47 OTHER INSTRUMENTATION↗

Modeling of molecular atomization energies using machine learning

Atomization energies are an important measure of chemical stability. Machine learning is used to model atomization energies of a diverse set of organic molecules, based on nuclear charges and atomic positions only. Our scheme maps the problem of solving the molecular time-independent Schrödinger equation onto a non-linear statistical regression problem. Kernel ridge regression models are trained on and compared to reference atomization energies computed using density functional theory (PBE0 approximation to Kohn-Sham level of theory). We use a diagonalized matrix representation of molecules based on the inter-nuclear Coulomb repulsion operator in conjunction with a Gaussian kernel. Validation on a set of over 7000 small organic molecules from the GDB database yields mean absolute error of ~10 kcal/mol, while reducing computational effort by several orders of magnitude. Applicability is demonstrated for prediction of binding energy curves using augmentation samples based on physical limits.

97 MATHEMATICS AND COMPUTING↗

MAESTROeX: A Massively Parallel Low Mach Number Astrophysical Solver

@e present MAESTROeX, a massively parallel solver for low Mach number astrophysical flows. The underlying low Mach number equation set allows for efficient, long-time integration for highly subsonic flows compared to compressible approaches. MAESTROeX is suitable for modeling full spherical stars as well as well as planar simulations of dynamics within localized regions of a star, and can robustly handle several orders of magnitude of density and pressure stratification. Previously, we have described the development of the predecessor of MAESTROeX, called MAESTRO, in a series of papers. Here, we present a new, greatly simplified temporal integration scheme that retains the same order of accuracy as our previous approaches. We also explore the use of alternative spatial mapping of the one-dimensional base state onto the full Cartesian grid. The code leverages the new AMReX software framework for block-structured adaptive mesh refinement (AMR) applications, allowing for scalability to large fractions of leadership-class machines. Finally, using our previous studies on the convective phase of single-degenerate progenitor models of SNe Ia as a guide, we characterize the performance of the code and validate the new algorithmic features. Like MAESTRO, MAESTROeX is fully open source.

79 ASTRONOMY AND ASTROPHYSICS↗

Development of a satellite SAR image spectra and altimeter wave height data assimilation system for ERS-1

The applicability of ERS-1 wind and wave data for wave models was studied using the WAM third generation wave model and SEASAT altimeter, scatterometer and SAR data. A series of global wave hindcasts is made for the surface stress and surface wind fields by assimilation of scatterometer data for the full 96-day SEASAT and also for two wind field analyses for shorter periods by assimilation with the higher resolution ECMWF T63 model and by subjective analysis methods. It is found that wave models respond very sensitively to inconsistencies in wind field analyses and therefore provide a valuable data validation tool. Comparisons between SEASAT SAR image spectra and theoretical SAR spectra derived from the hindcast wave spectra by Monte Carlo simulations yield good overall agreement for 32 cases representing a wide variety of wave conditions. It is concluded that SAR wave imaging is sufficiently well understood to apply SAR image spectra with confidence for wave studies if supported by realistic wave models and theoretical computations of the strongly nonlinear mapping of the wave spectrum into the SAR image spectrum. A closed nonlinear integral expression for this spectral mapping relation is derived which avoids the inherent statistical errors of Monte Carlo computations and may prove to be more efficient numerically.

Hasselmann, Klaus↗

The Grand Banks ERS-1 SAR wave spectra validation experiment

As part of the ERS-1 validation program, the ERS-1 Synthetic Aperture Radar (SAR) wave spectra validation experiment was carried out over the Grand Banks of Newfoundland (Canada) in Nov. 1991. The principal objective of the experiment was to obtain complete sets of wind and wave data from a variety of calibrated instruments to validate SAR measurements of ocean wave spectra. The field program activities are described and the rather complex wind and wave conditions which were observed are summarized. Spectral comparisons with ERS-1 SAR image spectra are provided. The ERS-1 SAR is shown to have measured swell and range traveling wind seas, but did not measure azimuth traveling wind seas at any time during the experiment. Results of velocity bunching forward mapping and new measurements of the relationship between wind stress and sea state are also shown.

Vachon, P. W.↗

Stacking Searches for Greater Than 100 MeV Gamma Ray Emission from Radio Galaxies and Seyfert Galaxies

The EGRET telescope on CGRO detected more than sixty sources of high-energy gamma radiation associated with active galactic nuclei (AGN). All but one of those belong to the blazar subclass; the only exception is the nearby radio galaxy Centaurus A. Since there is no obvious reason other than proximity to expect Cen A to be the only non-blazar AGN emitting in high-energy gamma rays, we have utilized the "stacking" technique to search for $>100$-MeV emission from two non-blazar AGN subclasses, radio galaxies and Seyfert galaxies. Maps of gamma-ray counts, exposure, and diffuse background have been created, then co-added in varying numbers based on sorts by redshift, 5-GHZ flux density, and optical brightness, and finally tested for gamma-ray emission. No detection significance greater than $2\sigma$ has been found for any subclass, sorting parameter, or number of objects co-added. Monte Carlo simulations have also been performed, to validate the technique and estimate the significance of the results.

Cillis, A. N.↗

Lower Thermospheric Composition Studies in the Auroral Zone

This TIMED/CEDAR grant had two major objectives. The GUVI instrument on TIMED should routinely produces maps of the flux of energetic particles and their average energy. However, while those data will be available soon there were no plans to routinely produce the O/N2 ratio in the auroral. Ground-based photometric techniques have been available for years which routinely measure all three quantities in the auroral zone. The first objective of the previous proposal was to use these ground-based techniques to provide some validation for the routine measure of average energy. The second objective was to use the ground-based to data to validate GUVI algorithms for the measure of O/N2 in the auroral zone. We have made some progress to these goals while we await the release of the properly precessed GUVI data. For now these objectives are being addressed by making use of algorithms by one of us (Doug Strickland of CPI) that are being used for specific GUVI level 1B data sets that contain data coincident with the groundbased measurements. Also we have collected ground-based data from two Alaska sites and they are available on our web site and on the CEDAR website. The details of the progress we have made are discussed.

Hecht, James↗

Sao Paulo Lightning Mapping Array (SP-LMA): Network Assessment and Analyses for Intercomparison Studies and GOES-R Proxy Activities

A 12 station Lightning Mapping Array (LMA) network was deployed during October 2011in the vicinity of São Paulo, Brazil (SP-LMA) to contribute total lightning measurements to an international field campaign [CHUVA - Cloud processes of tHe main precipitation systems in Brazil: A contribUtion to cloud resolVing modeling and to the GPM (GlobAl Precipitation Measurement)]. The SP-LMA was operational from November 2011 through March 2012. Sensor spacing was on the order of 15-30 km, with a network diameter on the order of 40-50km. The SP-LMA provides good 3-D lightning mapping out to150 km from the network center, with 2-D coverage considerably farther. In addition to supporting CHUVA science/mission objectives, the SP-LMA is supporting the generation of unique proxy data for the Geostationary Lightning Mapper (GLM) and Advanced Baseline Imager (ABI), on NOAA's Geostationary Operational Environmental Satellite-R (GOES-R: scheduled for a 2015 launch). These proxy data will be used to develop and validate operational algorithms so that they will be ready to use on "day1" following the GOES-R launch. The SP-LMA data also will be intercompared with lightning observations from other deployed lightning networks to advance our understanding of the capabilities/contributions of each of these networks toward GLM proxy and validation activities. This paper addresses the network assessment and analyses for intercomparison studies and GOES-R proxy activities

Blakeslee, R. J.↗

A Universal Refrigerant Charge Fault Detection and Diagnostics Method Based on Pump Down Operation

The performance of the heat pump system varies greatly depending on the refrigerant charge amount. Improving the refrigerant charge fault detection and diagnostics (FDD) method of vapor compression systems have the potential for increasing energy efficiency and reducing service cost. Previous studies to predict refrigerant charge amount are mostly empirical methods which require significant amount of experimental data for high accuracy. The primary goal of this research is to develop a universal charge fault detection method which requires only a few experimental data with high prediction accuracy.Currently, pump down operations are typical practices by HVAC technicians when they need to open the refrigerant circuit to make a repairment. In addition, compressors have a built-in low-pressure cut-off protection function, and the compressor performance maps are commonly available from manufacturers. The proposed method innovatively utilizes the typical pump down operation, the compressor low-pressure cut-off protection, and the compressor performance map. It does not require any geometry information of heat exchangers, refrigerant lines, or charge buffers.The new charge prediction method is firstly formulated through theoretical analysis, then verified and calibrated by a quasi-steady-state simulation of the pump down process for a residential heat pump system. The quasi steady-state simulation uses an HVAC system simulation framework driven by DOE/ORNL Heat Pump Design Model (HPDM). Preliminary experiment validations with heat pump refrigerant leakage tests demonstrate the deviation of the proposed charge prediction method compared with measurement is within 8%. This technology makes refrigerant charge amount available at the technician’s fingertips and leads to shorter maintenance time and fewer site visits.

Li, Zhenning↗

Biomass Retrieval from L-Band Polarimetric UAVSAR Backscatter and PRISM Stereo Imagery

The forest above-ground biomass (AGB) and spatial distribution of vegetation elements have profound effects on the productivity and biodiversity of terrestrial ecosystems. In this paper, we evaluated biomass estimation from L-band Synthetic Aperture Radar (SAR) data acquired by National Aeronautics and Space Administration (NASA) Uninhabited Aerial Vehicle SAR (UAVSAR) and the improvement of accuracy by adding canopy height information derived from stereo imagery acquired by Japan Aerospace Exploration Agency (JAXA) Panchromatic Remote Sensing Instrument for Stereo Mapping (PRISM) on-board the Advanced Land Observing Satellite (ALOS). Various models for prediction of forest biomass from UAVSAR data were investigated at pixel sizes of 1/4 ha (50 m x 50 m) and 1 ha. The variance inflation factor (VIF) was calculated for each of the explanatory variables in multivariable regression models to assess the multi-collinearity between explanatory variables. In addition, the t-and p-values were used to interpret the significance of the coefficients of each explanatory variables. The R(exp. 2), Root Mean Square Error (RMSE), bias and Akaike information criterion (AIC), and leave-one-out cross-validation (LOOCV) and bootstrapping were used to validate models. At 1/4-ha scale, the R(exp. 2) and RMSE of biomass estimation from a model using a single track of polarimetric UAVSAR data were 0.59 and 52.08 Mg/ha. With canopy height from PRISM as additional independent variable, R(exp. 2) increased to 0.76 and RMSE decreased to 39.74 Mg/ha (28.24%). At 1-ha scale, the RMSE of biomass estimation based on UAVSAR data of a single track was 39.42 Mg/ha with a R(exp. 2) of 0.77. With the canopy height from PRISM, R(exp. 2) increased to 0.86 and RMSE decreased to 29.47 Mg/ha (20.18%). The models using UAVSAR data alone underestimated biomass at levels above approximately 150 Mg/ha showing the saturation phenomenon. Adding canopy height from PRISM stereo imagery significantly improved the biomass estimation and elevated the saturation level in estimating biomass. Combined use of UAVSAR data acquired from opposite directions (odd and even tracks) slightly improved the biomass estimation.Combined use of UAVSAR data acquired from opposite directions (odd and even tracks) slightly improved the biomass estimation at 1/4-ha scale, R(exp. 2) increased from 0.59 to 0.66 and RMSE reduced from 52.08 to 48.57 Mg/ha. Averaging multiple acquisitions of UAVSAR data from the same look azimuth direction did not improve biomass estimation. A biomass map derived from NASA's LVIS (Laser Vegetation Imaging System) wave-form data was used as a reference for evaluation of the biomass maps from these models. The study has also shown that the errors decreased when deciduous, evergreen, and mixed forests were modeled separately but the improvement was not significant

Zhang, Zhiyu↗