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At least 1,639 records · Page 91

Multi-resolution 3D visualization of the early stages of cellular uptake of peptide-coated nanoparticles

A detailed understanding of the cellular uptake process is essential to the development of cellular delivery strategies and to the study of viral trafficking. However, visualization of the entire process, encompassing the fast dynamics (local to the freely diffusing nanoparticle) as well the state of the larger-scale cellular environment, remains challenging. Here, we introduce a three-dimensional multi-resolution method to capture, in real time, the transient events leading to cellular binding and uptake of peptide (HIV1-Tat)-modified nanoparticles. Applying this new method to observe the landing of nanoparticles on the cellular contour in three dimensions revealed long-range deceleration of the delivery particle, possibly due to interactions with cellular receptors. Furthermore, by using the nanoparticle as a nanoscale ‘dynamics pen’, we discovered an unexpected correlation between small membrane terrain structures and local nanoparticle dynamics. This approach could help to reveal the hidden mechanistic steps in a variety of multiscale processes.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Measuring the seeds of ion outflow: auroral sounding rocket observations of low-altitude ion heating and circulation

Here, we present an analysis of in situ measurements from the MICA (Magnetosphere-Ionosphere Coupling in the Alfvén Resonator) nightside auroral sounding rocket with comparisons to a multifluid ionospheric model. MICA made observations at altitudes below 325 km of the thermal ion kinetic particle distributions that are the origins of ion outflow. Late flight, in the vicinity of an auroral arc, we observe frictional processes controlling the ion temperature. Upflow of these cold ions is attributed to either the ambipolar field resulting from the heated electrons or possibly to ion-neutral collisions. We measure E → xB → convection away from the arc (poleward) and downflows of hundreds of m s -1 poleward of this arc, indicating small-scale low-altitude plasma circulation. In the early flight we observe DC electromagnetic Poynting flux and associated ELF wave activity influencing the thermal ion temperature in regions of Alfvénic aurora. We observe enhanced, anisotropic ion temperatures which we conjecture are caused by transverse heating by wave-particle interactions (WPI) even at these low altitudes. Throughout this region we observe several hundred m s -1 upflow of the bulk thermal ions colocated with WPI; however, the mirror force is negligible at these low energies; thus, the upflow is attributed to ambipolar fields (or possibly neutral upwelling drivers). Moreover, the low-altitude MICA observations serve to inform future ionospheric modeling and simulations of (a) the need to consider the effects of heating by WPI at altitudes lower than previously considered viable and (b) the occurrence of structured and localized upflows/downflows below where higher-altitude heating rocesses are expected.

47 OTHER INSTRUMENTATION↗

Atomic-Level Sculpting of Crystalline Oxides: Toward Bulk Nanofabrication with Single Atomic Plane Precision

We demonstrate atomic-level sculpting of 3D crystalline oxide nanostructures from metastable amorphous layer in a scanning transmission electron microscope (STEM). Strontium titanate nanostructures grow epitaxially from the crystalline substrate following the beam path. This method can be used for fabricating crystalline structures as small as 1-2 nm and the process can be observed in situ with atomic resolution. We further demonstrate fabrication of arbitrary shape structures via control of the position and scan speed of the electron beam. Combined with broad availability of the atomic resolved electron microscopy platforms, these observations suggest the feasibility of large scale implementation of bulk atomic-level fabrication as a new enabling tool of nanoscience and technology, providing a bottom-up, atomic-level complement to 3D printing.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Supramolecular Assembly of Lanthanide-Binding Tag Peptides for Aqueous Separation of Rare Earth Elements

Selective and eco-friendly separation and purification methods for rare earth elements (REEs) are necessary to meet the increasing demand for these valuable metals, which are extensively used in modern electronics and clean energy technologies. Mining feedstocks consist of REE mixtures as stable trivalent cations (Ln 3+ ) that are difficult to separate due to their identical charge and similar size. Lanthanide-binding tags (LBTs), peptide chelates that coordinate Ln 3+ in binding pockets, show promise as selective, high-affinity extractants. We demonstrate that the LBT variant LBTLLA 5– , designed for high selectivity for Tb 3+ , is an effective extractant, forming complexes with REEs in solution that subsequently organize into self-assembling structures rich in Ln 3+ . These structures condense into aggregates that can be separated, enabling an efficient, all-aqueous, eco-friendly separation process. The self-assembled structures are studied using dynamic light scattering, ζ-potential measurements, transmission electron microscopy, anomalous small-angle X-ray scattering, inductively coupled plasma optical emission spectroscopy, and ultraviolet–visible absorption spectroscopy, which confirm LBTLLA 5– peptide-REE ion binding and the further assembly of micron-scale structures rich in REEs. Molecular dynamics simulations reveal the interactions promoting aggregation as well as the integrity of the binding pocket upon self-assembly. We find that LBTLLA 5– :Ln 3+ complexes recruit excess cations within the macrostructures, and we demonstrate that aggregation and selective separation can be controlled by manipulating the metal-peptide ratio in solution. Furthermore, we demonstrate separation from equimolar mixtures of REE pairs Tb 3+ -Lu 3+ and Tb 3+ -La 3+ , supporting the application of LBT peptides as a platform for the selective separation of REEs.

LBT peptides↗

Mechanism of DNA origami folding elucidated by mesoscopic simulations

Abstract Many experimental and computational efforts have sought to understand DNA origami folding, but the time and length scales of this process pose significant challenges. Here, we present a mesoscopic model that uses a switchable force field to capture the behavior of single- and double-stranded DNA motifs and transitions between them, allowing us to simulate the folding of DNA origami up to several kilobases in size. Brownian dynamics simulations of small structures reveal a hierarchical folding process involving zipping into a partially folded precursor followed by crystallization into the final structure. We elucidate the effects of various design choices on folding order and kinetics. Larger structures are found to exhibit heterogeneous staple incorporation kinetics and frequent trapping in metastable states, as opposed to more accessible structures which exhibit first-order kinetics and virtually defect-free folding. This model opens an avenue to better understand and design DNA nanostructures for improved yield and folding performance.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

ATLAS HL-LHC Demonstrators with Data Carousel: Dataon-Demand and Tape Smart Writing

The High Luminosity upgrade to the LHC (HL-LHC) is expected to deliver scientific data at the multi-exabyte scale. To tackle this unprecedented data storage challenge, the ATLAS experiment initiated the Data Carousel project in 2018. Data Carousel is a tape-driven workflow in which bulk production campaigns with input data resident on tape are executed by staging and promptly processing a sliding window to disk buffer such that only a small fraction of inputs are pinned on disk at any one time. Put in ATLAS production before Run3, Data Carousel continues to be our focus for seeking new opportunities in disk space savings, and enhancing tape usage throughout the ATLAS Distributed Computing (ADC) environment. These efforts are highlighted by two recent ATLAS HL-LHC demonstrator projects: data-on-demand and tape smart writing. In this paper, we will discuss the recent studies and outcomes from these projects. The research was conducted together with site experts at CERN and Tier-1 centers.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Turbulent cascade in a two-ion plasma

It is shown that small but finite-amplitude drift wave turbulence in a two-ion-species plasma can be modeled by a Hasegawa-Mima equation. The mode cascade process and resulting turbulent spectrum are investigated. The spectrum is found to be similar to that of a two-component plasma, but the space and time scales of the turbulent cascade process can be quite different since they are rescaled by the presence of the second ion species.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

SHAPES AND PROBABILITIES OF GALAXY CLUSTERS. II. COMPARISONS WITH OBSERVATIONS

We identify low-redshift clusters and groups in the Sloan Digital Sky Survey and estimate their kinetic and correlation potential energies. We compare the distribution of these energies to the predictions by Yang and Saslaw and in the process estimate a measure of an average three-dimensional velocity and spatial anisotropy of a sample of clusters. We find that the inferred velocity anisotropy is correlated with the inferred spatial anisotropy. We also find that the general shape of the energy distribution agrees with theory over a wide range of scales from small groups to superclusters once the uncertainties and fluctuations in the estimated energies are included.

79 ASTRONOMY AND ASTROPHYSICS↗

Dark matter and strong electroweak phase transition in a radiative neutrino mass model

We consider an extension of the standard model (SM) with charged singlet scalars and right handed (RH) neutrinos all at the electroweak scale. In this model, the neutrino masses are generated at three loops, which provide an explanation for their smallness, and the lightest RH neutrino, N{sub 1}, is a dark matter candidate. We find that for three generations of RH neutrinos, the model can be consistent with the neutrino oscillation data, lepton flavor violating processes, N{sub 1} can have a relic density in agreement with the recent Planck data, and the electroweak phase transition can be strongly first order. We also show that the charged scalars may enhance the branching ratio h→γγ, where as h→γZ get can get few percent suppression. We also discuss the phenomenological implications of the RH neutrinos at the collider.

79 ASTRONOMY AND ASTROPHYSICS↗

The Role of Hydraulic Connectivity and Management on Soil Aggregate Size and Stability in the Clear Creek Watershed, Iowa

The role of tillage practices on soil aggregate properties has been mainly addressed at the pedon scale (i.e., soilscape scale) by treating landscape elements as disconnected. However, there is observed heterogeneity in aggregate properties along flowpaths, suggesting that landscape scale hydraulic processes are also important. This study examines this supposition using field, laboratory and modeling analysis to assess aggregate size and stability along flowpaths under different management conditions: (1) tillage-induced abrasion effects on aggregate size were evaluated with the dry mean weight diameter (DMWD); (2) raindrop impact effects were evaluated with small macroaggregate stability (SMAGGSTAB) using rainfall simulators; and (3) these aggregate proxies were studied in the context of connectivity through the excess bed shear stress (δ), quantified using a physically-based landscape model. DMWD and SMAGGSTAB decreased along the flowpaths for all managements, and a negative correspondence between the proxies and δ was observed. δ captured roughness effects on connectivity along the flowpaths: highest connectivity was noted for parallel-ridge-till flowpaths, where δ ranged from 0–8.2 Pa, and lowest connectivity for contour-ridge-till flowpaths, where δ ranged from 0–1.1 Pa. High tillage intensity likely led to an increase in aggregate susceptibility to hydraulic forcing, reflected in the higher gradients of aggregate size and stability trendlines with respect to δ. Finally, a linear relationship between DMWD and SMAGGSTAB was established.

Wacha, Kenneth M. (ORCID:0000000270351071)↗

3D Numerical Simulation of Kink-driven Rayleigh–Taylor Instability Leading to Fast Magnetic Reconnection

Fast magnetic reconnection involving non-MHD microscale physics is thought to underlie both solar eruptions and laboratory plasma current disruptions. While there is extensive research on both the MHD macroscale physics and the non-MHD microscale physics, the process by which large-scale MHD couples to the microscale physics is not well understood. An MHD instability cascade from a kink to a secondary Rayleigh–Taylor instability in the Caltech astrophysical jet laboratory experiment provides new insights into this coupling and motivates a 3D numerical simulation of this transition from large to small scale. A critical finding from the simulation is that the axial magnetic field inside the current-carrying dense plasma must exceed the field outside. In addition, the simulation verifies a theoretical prediction and experimental observation that, depending on the strength of the effective gravity produced by the primary kink instability, the secondary instability can be Rayleigh–Taylor or mini-kink. Finally, it is shown that the kink-driven Rayleigh–Taylor instability generates a localized electric field sufficiently strong to accelerate electrons to very high energy.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

High-resolution dynamical modelling of the Antarctic stratospheric vortex

Progress is reported on the high-resolution three-dimensional numerical simulation of flows characteristic of the Antarctic wintertime stratosphere. The numerical model is a modified version of the Reading University sigma-coordinate used previously for tropospheric studies. Physical parameterizations are kept to a minimum in order to concentrate as much computing power as possible on simulating details of the dynamical processes. The major question addressed is whether the features observed in recent high-resolution two-dimensional simulations - namely: (1) the formation of a sharp edge to the vortex (seen in the potential vorticity field), (2) the survival of the polar vortex in a material entity, and (3) the formation of small-scale eddies rough the break-up of tongues of high potential vorticity drawn out from the polar vortex - are realized in three-dimensional simulations.

Haynes, P. H.↗

Nonlinear interaction of near-planar TS waves and longitudinal vortices in boundary-layer transition

The nonlinear interactions that evolve between a planar or nearly planar Tollmien-Schlichting (TS) wave and the associated longitudinal vortices are considered theoretically for a boundary layer at high Reynolds number. The vortex flow is either induced by the TS nonlinear forcing or is input upstream, and similarly for the nonlinear wave development. Three major kinds of nonlinear spatial evolution, Types 1-3, are found. Each can start from secondary instability and then become nonlinear, Type 1 proving to be relatively benign but able to act as a pre-cursor to the Types 2, 3 which turn out to be very powerful nonlinear interactions. Type 2 involves faster stream-wise dependence and leads to a finite-distance blow-up in the amplitudes, which then triggers the full nonlinear 3-D triple-deck response, thus entirely altering the mean-flow profile locally. In contrast, Type 3 involves slower streamwise dependence but a faster spanwise response, with a small TS amplitude thereby causing an enhanced vortex effect which, again, is substantial enough to entirely alter the meanflow profile, on a more global scale. Streak-like formations in which there is localized concentration of streamwise vorticity and/or wave amplitude can appear, and certain of the nonlinear features also suggest by-pass processes for transition and significant changes in the flow structure downstream. The powerful nonlinear 3-D interactions 2, 3 are potentially very relevant to experimental findings in transition.

Smith, F. T.↗

The ionosphere of Neptune

Limited knowledge of ionospheric processes of the outer planets and practically no information on the upper atmosphere of Neptune result in a range of possible ionospheres for Neptune. Various cases are investigated in order to establish a theoretical framework of the ionospheric structure against which the radio occultation measurements can be evaluated. The peak electron densities could range from 1000/cu cm to 10 to the 6th/cu cm depending on ion loss processes and particle ionization processes. The scale height could also range from 300 km to 2000 km depending on the exospheric temperature. Although various assumptions must be made, it is predicted that an auroral ionosphere with large electron densities and a large scale height will be observed by the ingress radio occultation measurement, and that a compressed ionosphere with small electron densities will be seen during the egress measurement.

Shinagawa, H.↗

The interactions of atmospheric cosmogenic radionuclides with spacecraft surfaces

The discovery of the cosmogenic radionuclide Be-7 on the front surface (and the front surface only) of the Long Duration Exposure Facility (LDEF) spacecraft has opened opportunities to investigate new phenomena in several disciplines of space science. The experiments performed for this work show that the Be-7 results only if the source of the isotope is the atmosphere through which the spacecraft passed. We should expect that the uptake of beryllium in such circumstances will depend on the chemical form of the Be and the chemical nature of the substrate. It was found that the observed concentration of Be-7 does, in fact, differ between metal surfaces and organic surfaces such as PTFE (teflon). It is noted, however, that: (1) organic surfaces, even PTFE, are etched by the atomic oxygen found under these orbital conditions, and (2) the relative velocity of the species is 8 km(exp -1)s relative to the surface and the interaction chemistry and physics may differ from the norm. The Be-7 is formed by spallation of O and N nuclei under cosmic ray proton bombardment. The principal source region is at altitudes of 12-15 km. While very small quantities are produced above 300 km, the amount measured on the LDEF was 3 to 4 orders of magnitude higher than expected from production at orbital attitude. The most reasonable explanation is that Be-7 is rapidly transported from low altitudes by some unknown mechanism. The process must take place on a time scale similar to the half-life of the isotope (53 days). Many other isotopes are produced by cosmic ray reactions, and some of these are suited to measurement by the extremely sensitive methods of accelerator mass spectrometry. A program was initiated to search for these isotopes and it is hoped that such studies will provide new methods for studying mixing in the upper atmosphere.

Gregory, John C.↗

The interactions of atmospheric cosmogenic radionuclides with spacecraft surfaces

The discovery of the cosmogenic radionuclide Be-7 on the front surface of the Long Duration Exposure Facility (LDEF) spacecraft has opened opportunities to investigate new phenomena in several disciplines of space science. The experiments performed for this work show that the Be-7 results only if the source of the isotope is the atmosphere through which the spacecraft passed. We should expect that the uptake of beryllium in such circumstances will depend on the chemical form of the Be and the chemical nature of the substrate. It was found that the observed concentration of Be-7 does, in fact, differ between metal surfaces and organic surfaces such as PTFE (teflon). It is noted, however, that: (1) organic surfaces, even PTFE, are etched by the atomic oxygen found under these orbital conditions, and (2) the relative velocity of the species is 8 km(exp -1)s relative to the surface and the interaction chemistry and physics may differ from the norm. The Be-7 is formed by spallation of O and N nuclei under cosmic ray proton bombardment. The principal source region is at altitudes of 12-15 km. While very small quantities are produced above 300 km, the amount measured on the LDEF was 3 to 4 orders of magnitude higher than expected from production at orbital altitude. The most reasonable explanation is that Be-7 is rapidly transported from low altitudes by some unknown mechanism. The process must take place on a time scale similar to the half-life of the isotope (53 days). Many other isotopes are produced by cosmic ray reactions, and some of these are suited to measurement by the extremely sensitive methods of accelerator mass spectrometry. A program was initiated to search for these isotopes and it is hoped that such studies will provide new methods for studying mixing in the upper atmosphere.

Gregory, J. C.↗

Three-Dimensional Simulations of Mantle Convection in Io

Io has very high surface heat flow and an abundance of volcanic activity, which are thought to be driven by nonuniform tidal heating in its interior. This nonuniform heat is transported to the base of the lithosphere by very vigorous convection in Io's silicate mantle, the form of which is presumably responsible for the distribution of surface features such as volcanoes and mountains. We here present three-dimensional spherical calculations of mantle convection in Io, in order to ascertain the likely form of this convection and the resulting distribution of heat flow at the surface and core-mantle boundary. Different models of tidal dissipation are considered: the endmember scenarios (identified by M. N. Ross and G. Schubert) of dissipation in the entire mantle, or dissipation in a thin (approximately 100-km-thick) asthenosphere, as well as the 'preferred' distribution of M. N. Ross et al. comprising 1/3 mantle and 2/3 asthenosphere heating. The thermal structure of Io's mantle and asthenosphere is found to be strongly dependent on tidal heating mode, as well as whether the mantle-asthenosphere boundary is permeable or impermeable. Results indicate a large-scale flow pattern dominated by the distribution of tidal heating, with superimposed small-scale asthenospheric instabilities that become more pronounced with increasing Rayleigh number. These small-scale instabilities spread out the surface heat flux, resulting in smaller heat flux variations with increasing Rayleigh number. Scaled to Io's Rayleigh number of O(10(exp 12)) variations of order a few percent are expected. This small but significant variation in surface heat flux may be compatible with the observed distributions of volcanic centers and mountains, which appear fairly uniform at first sight but display a discernible distribution when suitably processed. The observed distribution of volcanic centers is similar to the asthenosphere heating distribution, implying that most of the tidal heating in Io occurs in an asthenosphere.

Tackley, Paul J.↗

Direct Solar Wind Proton Access into Permanently Shadowed Lunar Polar Craters

Recent analyses of Lunar Prospector neutron spectrometer (LPNS) data have suggested that high abundances of hydrogen exist within cold traps at the lunar poles, and it has often been assumed that hydrogen-bearing volatiles sequestered in permanent shadow are topographically shielded from sputtering by solar wind protons. However, recent simulation results are presented showing that solar wind protons clearly access the floor of an idealized, shadowed lunar crater through a combination of thermal and ambipolar processes, in effect creating a plasma "miniwake". These simulations are the first to model the mini-wake environment in two spatial dimensions with a self-consistent lunar surface-plasma interaction. Progress is reported on constraining the nonzero particle fluxes and energies incident on kilometer-scale shadowed topography, such as a small crater embedded within a larger one. The importance of direct solar wind proton bombardment is discussed within the context of understanding the stability and inventory of hydrogen-bearing volatiles in shadow at the lunar poles. The support of the National Lunar Science institute, the DREAM institute, LPROPS, and the NASA Postdoctoral Program at NASA Goddard Space Flight Center administered by ORAU are gratefully acknowledged.

Zimmerman, M. I.↗