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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
DOE OSTI2014

Collaborative Research. Fundamental Science of Low Temperature Plasma-Biological Material Interactions

Low temperature plasma (LTP) treatment of biological tissue is a promising path toward sterilization of bacteria due to its versatility and ability to operate under well-controlled and relatively mild conditions. The present collaborative research of an interdisciplinary team of investigators at University of Maryland, College Park (UMD), and University of California, Berkeley (UCB) focused on establishing our knowledge based with regard to low temperature plasma-induced chemical modifications in biomolecules that result in inactivation due to various plasma species, including ions, reactive radicals, and UV/VUV photons. The overall goals of the project were to identify and quantify the mechanisms by which low and atmospheric pressure plasma deactivates endotoxic biomolecules. Additionally, we wanted to understand the mechanism by which atmospheric pressure plasmas (APP) modify surfaces and how these modifications depend on the interaction of APP with the environment. Various low pressure plasma sources, a vacuum beam system and several atmospheric pressure plasma sources were used to accomplish this. In our work we elucidated for the first time the role of ions, VUV photons and radicals in biological deactivation of representative biomolecules, both in a UHV beam system and an inductively coupled, low pressure plasma system, and established the associated atomistic biomolecule changes. While we showed that both ions and VUV photons can be very efficient in deactivation of biomolecules, significant etching and/or deep modification (~200 nm) accompanied these biological effects. One of the most important findings in this work is the significant radical-induced deactivation and surface modification can occur with minimal etching. However, if radical fluxes and corresponding etch rates are relatively high, for example at atmospheric pressure, endotoxic biomolecule film inactivation may require near-complete removal of the film. These findings motivated further work at atmospheric pressure using several types of low temperature plasma sources, for which radical induced interactions generally dominate due to short mean free paths of ions and VUV photons. For these conditions we demonstrated the importance of environmental interactions when atmospheric pressure plasma sources are used to modify biomolecules. This is evident from both gas phase characterization data and in-situ surface characterization of treated biomolecules. Environmental interactions can produce unexpected outcomes due to the complexity of reactions of reactive species with the atmosphere which determines the composition of reactive fluxes and atomistic changes of biomolecules. Overall, this work clarified a richer spectrum of scientific opportunities and challenges for the field of low temperature plasma-biomolecule surface interactions than initially anticipated, in particular for plasma sources operating at atmospheric pressure. The insights produced in this work, e.g. demonstration of the importance of environmental interactions, are generally important for applications of APP to materials modifications. Thus one major contributions of this research has been the establishment of methodologies to more systematically study the interaction of plasma with bio-molecules. In particular, our studies of atmospheric pressure plasma sources using very well-defined experimental conditions enabled to combine atomistic surface modifications of biomolecules with changes in their biological function. The clarification of the role of ions, VUV photons and radicals in deactivation of biomolecules during low pressure and atmospheric pressure plasma-biomolecule interaction has broad implications, e.g. for the emerging field of plasma medicine. The development of methods to detect the effects of plasma treatment on immune-active biomolecules will be helpful in many future studies.

36 MATERIALS SCIENCE↗
DOE OSTI2016

Final Report: Nanoscale Dynamical Heterogeneity in Complex Magnetic Materials

A magnetic object can be demagnetized by dropping it on a hard surface, but what does ‘demagnetized’ actually mean? In 1919 Heinrich Barkhausen proved the existence of magnetic domains, which are regions of uniform magnetization that are much larger than atoms but much smaller than a macroscopic object. A material is fully magnetized when domain magnetizations are aligned, while it is demagnetized when the domain magnetizations are randomly oriented and the net magnetization is zero. The heterogeneity of a demagnetized object leads to interesting questions. Magnets are unstable when their poles align, and stable when their poles anti-align, so why is the magnetized state ever stable? What do domains look like? What is the structure of a domain wall? How does the magnetized state transform to the demagnetized state? How do domains appear and disappear? What are the statistical properties of domains and how do these vary as the domain pattern evolves? Some of these questions remain the focus of intense study nearly a century after Barkhausen’s discovery. For example, just a few years ago a new kind of magnetic texture called a skyrmion was discovered. A skyrmion is a magnetic domain that is a nanometer-scale, topologically protected vortex. ‘Topologically protected’ means that skyrmions are hard to destroy and so are stable for extended periods. Skyrmions are characterized by integral quantum numbers and are observed to move with little dissipation and so could store and process information with very low power input. Our research project uses soft x-rays, which offer very high magnetic contrast, to probe magnetic heterogeneity and to measure how it evolves in time under external influences. We will condition a soft x-ray beam so that the wave fronts will be coherent, that is, they will be smooth and well-defined. When coherent soft x-ray beam interacts with a magnetic material, the magnetic heterogeneity is imprinted onto the wave fronts and projected into a diffraction pattern. These patterns will be analyzed to understand the structure, motion, and statistical properties of magnetic textures and their boundaries. Over the period covered by this grant we will study a) the structure, phase behaviors, and motion of skyrmions in various thin film materials, and 2) the statistical properties of Barkhausen cascades, which are a key factor in how magnetization varies.

36 MATERIALS SCIENCE↗
DOE OSTI2018

Computational Evaluation of Mg–Salen Compounds as Subsurface Fluid Tracers: Molecular Dynamics Simulations in Toluene–Water Mixtures and Clay Mineral Nanopores

Molecular tracers that can be selectively placed underground and uniquely identified at the surface using simple on-site spectroscopic methods would significantly enhance subsurface fluid monitoring capabilities. To ensure their widespread utility, the solubility of these tracers must be easily tuned to oil- or water-wet conditions as well as reducing or eliminating their propensity to adsorb onto subsurface rock and/or mineral phases. In this work, molecular dynamics simulations were used to investigate the relative solubilities and mineral surface adsorption properties of three candidate tracer compounds comprising Mg–salen derivatives of varying degrees of hydrophilic character. Simulations in water–toluene liquid mixtures indicate that the partitioning of each Mg–salen compound relative to the interface is strongly influenced by the degree of hydrophobicity of the compound. Simulations of these complexes in fluid-filled mineral nanopores containing neutral (kaolinite) and negatively charged (montmorillonite) mineral surfaces reveal that adsorption tendencies depend upon a variety of parameters, including tracer chemical properties, mineral surface type, and solvent type (water or toluene). Simulation snapshots and averaged density profiles reveal insight into the solvation and adsorption mechanisms that control the partitioning of these complexes in mixed liquid phases and nanopore environments. As a result, this work demonstrates the utility of molecular simulation in the design and screening of molecular tracers for use in subsurface applications.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2018

Tuning Inner-Ear Tip-Link Affinity Through Alternatively Spliced Variants of Protocadherin-15

Human hearing relies upon the tip-to-tip interaction of two nonclassical cadherins, protocadherin-15 (PCDH15) and cadherin-23 (CDH23). Together, these proteins form a filament called the tip link that connects neighboring stereocilia of mechanosensitive hair cells. As sound waves enter the cochlea, the stereocilia deflect and tension is applied to the tip link, opening nearby transduction channels. Disruption of the tip link by loud sound or calcium chelators eliminates transduction currents and illustrates that tip-link integrity is critical for mechanosensing. Tip-link remodeling after disruption is a dynamic process, which can lead to the formation of atypical complexes that incorporate alternatively spliced variants of PCDH15. These variants are categorized into six groups (N1–N6) based upon differences in the first two extracellular cadherin (EC) repeats. Here, we characterized the two N-terminal EC repeats of all PCDH15 variants (pcdh15(N1) to pcdh15(N6)) and combined these variants to test complex formation. We solved the crystal structure of a new complex composed of CDH23 EC1-2 (cdh23) and pcdh15(N2) at 2.3 Å resolution and compared it to the canonical cdh23–pcdh15(N1) complex. While there were subtle structural differences, the binding affinity between cdh23 and pcdh15(N2) is ~6 times weaker than cdh23 and pcdh15(N1) as determined by surface plasmon resonance analysis. Steered molecular dynamics simulations predict that the unbinding force of the cdh23–pcdh15(N2) complex can be lower than the canonical tip link. Our results demonstrate that alternative heterophilic tip-link structures form stable protein–protein interactions in vitro and suggest that homophilic PCDH15–PCDH15 tip links form through the interaction of additional EC repeats.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

Evaluation of 6-OxP-CD, an Oxime-based cyclodextrin as a viable medical countermeasure against nerve agent poisoning: Experimental and molecular dynamic simulation studies on its inclusion complexes with cyclosarin, soman and VX

The ability of the cyclodextrin-oxime construct 6-OxP-CD to bind and degrade the nerve agents Cyclosarin (GF), Soman (GD) and S -[2-[Di(propan-2-yl)amino]ethyl] O -ethyl methylphosphonothioate (VX) has been studied using 31 P-nuclear magnetic resonance (NMR) under physiological conditions. While 6-OxP-CD was found to degrade GF instantaneously under these conditions, it was found to form an inclusion complex with GD and significantly improve its degradation (t 1/2 ~ 2 hrs) relative over background (t 1/2 ~ 22 hrs). Consequently, effective formation of the 6-OxP-CD:GD inclusion complex results in the immediate neutralization of GD and thus preventing it from inhibiting its biological target. In contrast, NMR experiments did not find evidence for an inclusion complex between 6-OxP-CD and VX, and the agent’s degradation profile was identical to that of background degradation (t 1/2 ~ 24 hrs). As a complement to this experimental work, molecular dynamics (MD) simulations coupled with Molecular Mechanics-Generalized Born Surface Area (MM-GBSA) calculations have been applied to the study of inclusion complexes between 6-OxP-CD and the three nerve agents. These studies provide data that informs the understanding of the different degradative interactions exhibited by 6-OxP-CD with each nerve agent as it is introduced in the CD cavity in two different orientations (up and down). For its complex with GF, it was found that the oxime in 6-OxP-CD lies in very close proximity (P GF …O Oxime ~ 4–5 Å) to the phosphorus center of GF in the ‘down GF ’ orientation for most of the simulation accurately describing the ability of 6-OxP-CD to degrade this nerve agent rapidly and efficiently. Further computational studies involving the center of masses (COMs) for both components (GF and 6-OxP-CD) also provided some insight on the nature of this inclusion complex. Distances between the COMs (ΔCOM) lie closer in space in the ‘down GF ’ orientation than in the ‘up GF ’ orientation; a correlation that seems to hold true not only for GF but also for its congener, GD. In the case of GD, calculations for the ‘down GD ’ orientation showed that the oxime functional group in 6-OxP-CD although lying in close proximity (P GD …O Oxime ~ 4–5 Å) to the phosphorus center of the nerve agent for most of the simulation, adopts another stable conformation that increase this distance to ~ 12–14 Å, thus explaining the ability of 6-OxP-CD to bind and degrade GD but with less efficiency as observed experimentally (t 1/2 ~ 4 hr. vs. immediate). Lastly, studies on the VX:6-OxP-CD system demonstrated that VX does not form a stable inclusion complex with the oxime-bearing cyclodextrin and as such does not interact in a way that is conducive to an accelerated degradation scenario. Collectively, these studies serve as a basic platform from which the development of new cyclodextrin scaffolds based on 6-OxP-CD can be designed in the development of medical countermeasures against these highly toxic chemical warfare agents.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2023

Signal Decomposition for Intrusion Detection in Reliability Assessment in Cyber Resilience (Summary Report)

The complexity of assuring cyber resilience for physical process interactions in connected systems such as energy grids increases dramatically as the coupling between processes becomes more direct and responsive. An example of this growing complexity is provided by Integrated Energy Systems (IES), in which various processes such as nuclear heat generation and commodity production are being directly coupled for increased responsiveness to highly variable signals such as market pricing or electricity demand. As such, the potential attack surface of the coupled processes is larger than the two processes independently. Securing these complex systems requires two-fold monitoring: cybersecure monitoring for potential malicious incursion, and physics monitoring for system tampering. Physics monitoring includes analyzing the behavior of the signals within the system for anomalous behavior. This analysis has been shown to be insufficient if approached by only data-driven machine learning and artificial intelligence (MLAI) techniques or only low-level model comparison. Previous efforts at Purdue University suggested combining high-fidelity models with MLAI algorithms as a basis for a software tool for detecting anomalies in physical processes. This work built on that suggestion, developing an advanced library for signal decomposition and analysis using both MLAI and high-fidelity physics algorithms for greatly improved anomaly detection, especially false data injection. This software can be used as part of a secure imbedded intelligence (SEI) system designed under Consequence-driven Cyber-informed Engineering (CCE) for complex coupled systems. This library established a foundation for online and posteriori analysis of digital signals for the purpose of detecting potential malicious tampering in digital signals representing physical processes. Demonstrations carried out throughout the development highlight the effective use of characterization algorithms to detect signal perturbations, particularly triangle attack-style perturbations, in three wide-ranging applications: seismic monitoring, nuclear thermal hydraulics system simulation, and custom manufacturing.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

Unconventional surface state pairs in a high-symmetry lattice with anti-ferromagnetic band-folding

Many complex magnetic structures in a high-symmetry lattice can arise from a superposition of well-defined magnetic wave vectors. These “multi-q” structures have garnered much attention because of interesting real-space spin textures such as skyrmions. However, the role multi-q structures play in the topology of electronic bands in momentum space has remained rather elusive. Here we show that the type-I anti-ferromagnetic 1q, 2q and 3q structures in an face-centered cubic sublattice with band inversion, such as NdBi, can induce unconventional surface state pairs inside the band-folding hybridization bulk gap. Our density functional theory calculations match well with the recent experimental observation of unconventional surface states with hole Fermi arc-like features and electron pockets below the Neel temperature. We further show that these multi-q structures have Dirac and Weyl nodes. Our work reveals the special role that band-folding from anti-ferromagnetism and multi-q structures can play in developing new types of surface states.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2023

Upper critical solution temperature polymer assemblies via variable temperature liquid phase transmission electron microscopy and liquid resonant soft X-ray scattering

Abstract Here, we study the upper critical solution temperature triggered phase transition of thermally responsive poly(ethylene glycol)- block -poly(ethylene glycol) methyl ether acrylate- co -poly(ethylene glycol) phenyl ether acrylate- block -polystyrene nanoassemblies in isopropanol. To gain mechanistic insight into the organic solution-phase dynamics of the upper critical solution temperature polymer, we leverage variable temperature liquid-cell transmission electron microscopy correlated with variable temperature liquid resonant soft X-ray scattering. Heating above the upper critical solution temperature triggers a reduction in particle size and a morphological transition from a spherical core shell particle with a complex, multiphase core to a micelle with a uniform core and Gaussian polymer chains attached to the surface. These correlated solution phase methods, coupled with mass spectral validation and modeling, provide unique insight into these thermoresponsive materials. Moreover, we detail a generalizable workflow for studying complex, solution-phase nanomaterials via correlative methods.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2020

Structural basis for autophagy inhibition by the human Rubicon–Rab7 complex

Rubicon is a potent negative regulator of autophagy and a potential target for autophagy-inducing therapeutics. Rubicon-mediated inhibition of autophagy requires the interaction of the C-terminal Rubicon homology (RH) domain of Rubicon with Rab7–GTP. Here we report the 2.8-Å crystal structure of the Rubicon RH domain in complex with Rab7–GTP. Our structure reveals a fold for the RH domain built around four zinc clusters. The switch regions of Rab7 insert into pockets on the surface of the RH domain in a mode that is distinct from those of other Rab–effector complexes. Rubicon residues at the dimer interface are required for Rubicon and Rab7 to colocalize in living cells. Mutation of Rubicon RH residues in the Rab7-binding site restores efficient autophagic flux in the presence of overexpressed Rubicon, validating the Rubicon RH domain as a promising therapeutic target.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2014

SLIPPING MAGNETIC RECONNECTION TRIGGERING A SOLAR ERUPTION OF A TRIANGLE-SHAPED FLAG FLUX ROPE

We report the first simultaneous activities of the slipping motion of flare loops and a slipping eruption of a flux rope in 131 Å and 94 Å channels on 2014 February 2. The east hook-like flare ribbon propagated with a slipping motion at a speed of about 50 km s{sup –1}, which lasted about 40 minutes and extended by more than 100 Mm, but the west flare ribbon moved in the opposite direction with a speed of 30 km s{sup –1}. At the later phase of flare activity, there was a well developed ''bi-fan'' system of flare loops. The east footpoints of the flux rope showed an apparent slipping motion along the hook of the ribbon. Simultaneously, the fine structures of the flux rope rose up rapidly at a speed of 130 km s{sup –1}, much faster than that of the whole flux rope. We infer that the east footpoints of the flux rope are successively heated by a slipping magnetic reconnection during the flare, which results in the apparent slippage of the flux rope. The slipping motion delineates a ''triangle-shaped flag surface'' of the flux rope, implying that the topology of a flux rope is more complex than anticipated.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2014

Final technical report for project titled Quantitative Characterization of Cell Aggregation/Adhesion as Predictor for Distribution and Transport of Microorganisms in Subsurface Environment

This project aims to explore and develop enabling methodology and techniques for nano-scale characterization of microbe cell surface contact mechanics, interactions and adhesion quantities that allow for identification and quantification of indicative properties related to microorganism migration and transport behavior in porous media and in subsurface environments. Microbe transport has wide impact and therefore is of great interest in various environmental applications such as in situ or enhanced subsurface bioremediation,filtration processes for water and wastewater treatments and protection of drinking water supplies. Although great progress has been made towards understanding the identities and activities of these microorganisms in the subsurface, to date, little is known of the mechanisms that govern the mobility and transport of microorganisms in DOE’s contaminated sites, making the outcomes of in situ natural attenuation or contaminant stability enhancement unpredictable. Conventionally, movement of microorganisms was believed to follows the rules governing solute (particle) transport. However, recent studies revealed that cell surface properties, especially those pertaining to cell attachment/adhesion and aggregation behavior, can cause the microbe behavior to deviate from non-viable particles and hence greatly influence the mobility and distribution of microorganisms in porous media.This complexity highlights the need to obtain detailed information of cell-cell and cell-surface interactions in order to improve and refine the conceptual and quantitative model development for fate and transport of microorganisms and contaminant in subsurface. Traditional cell surface characterization methods are not sufficient to fully predict the deposition rates and transport behaviors of microorganism observed. A breakthrough of methodology that would allow for quantitative and molecular-level description of intrinsic cell surface properties indicative for cell-surface interactions is essential for the field. To tackle this, we have developed a number of new Bio-nanomechanical techniques, including reflection interference contrast microscopy (RICM) and bio-AFM (Atomic Force Microscopy), for cell adhesion-detachment measurement of the long-range surface interactions, in combination with mathematical modeling, which would allow us to characterize the mechanical behavior from single cell to multi-cell aggregate, critical thresholds for large scale coaggregation and transportation of cells and aggregates in the presence of long range inter-surface forces etc. Although some technical and mathematical challenges remain, the preliminary results promise great breakthrough potential. In this study, we investigated the cellular surface characteristics of representative bio-remediating microorganisms relevant to DOE IFRC (Integrated Field-Scale Subsurface Research Challenges) sites and their transport behaviors in porous media, aiming to draw a groundbreaking correlation between the micro-scale genetic and biological origin-based cell surface properties, the consequent mechanical adhesion and aggregation behaviors, and the macro-scale microbial mobility and retention in porous media, which are unavailable in the literature. The long-term goal is to significantly improve the mechanistic and quantitative understanding of microbial mobility, sorption, and transport within reactive transport models as needed to manipulate subsurface contaminant fate and transport predictions.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2019

Identification of stable adsorption sites and diffusion paths on nanocluster surfaces: an automated scanning algorithm

The diverse coordination environments on the surfaces of discrete, three-dimensional (3D) nanoclusters contribute significantly to their unique catalytic properties. Identifying the numerous adsorption sites and diffusion paths on these clusters is however tedious and time-consuming, especially for large, asymmetric nanoclusters. Here, we present a simple, automated method for constructing approximate 2D potential energy surfaces for the adsorption of atomic species on the surfaces of 3D nanoclusters with minimal human intervention. These potential energy surfaces fully characterize the important adsorption sites and diffusion paths on the nanocluster surfaces with accuracies similar to current approaches and at comparable computational cost. Our method can treat complex nanoclusters, such as alloy nanoclusters, and accounts for cluster relaxation and adsorbate-induced reconstruction, important for obtaining accurate energetics. Moreover, its highly parallelizable nature is ideal for modern supercomputer architectures. We showcase our method using two clusters: Au 18 and Pt 55 . For Au 18 , diffusion of atomic hydrogen between the most stable sites occurs via non-intuitive paths, underlining the necessity of exploring the complete potential energy surface. By enabling the rapid and unbiased assessment of adsorption and diffusion on large, complex nanoclusters, which are particularly difficult to handle manually, our method will help advance materials discovery and the rational design of catalysts.

36 MATERIALS SCIENCE↗
DOE OSTI2024

Probing the dynamics and bottleneck of the key atmospheric SO 2 oxidation reaction by the hydroxyl radical

SO 2 (Sulfur dioxide) is the major precursor to the production of sulfuric acid (H 2 SO 4 ), contributing to acid rain and atmospheric aerosols. Sulfuric acid formed from SO 2 generates light-reflecting sulfate aerosol particles in the atmosphere. This property has prompted recent geoengineering proposals to inject sulfuric acid or its precursors into the Earth’s atmosphere to increase the planetary albedo to counteract global warming. SO 2 oxidation in the atmosphere by the hydroxyl radical HO to form HOSO 2 is a key rate-limiting step in the mechanism for forming acid rain. However, the dynamics of the HO + SO 2 → HOSO 2 reaction and its slow rate in the atmosphere are poorly understood to date. Herein, we use photoelectron spectroscopy of cryogenically cooled HOSO 2 – anion to access the neutral HOSO 2 radical near the transition state of the HO + SO 2 reaction. Spectroscopic and dynamic calculations are conducted on the first ab initio-based full-dimensional potential energy surface to interpret the photoelectron spectra of HOSO 2 – and to probe the dynamics of the HO + SO 2 reaction. In addition to the finding of a unique pre-reaction complex (HO⋯SO 2 ) directly connected to the transition state, dynamic calculations reveal that the accessible phase space for the HO + SO 2 → HOSO 2 reaction is extremely narrow, forming a key reaction bottleneck and slowing the reaction rate in the atmosphere, despite the low reaction barrier. This study underlines the importance of understanding the full multidimensional potential energy surface to elucidate the dynamics of complex bimolecular reactions involving polyatomic reactants.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2021

In Situ TEM Tensile Testing of Bicrystals with Tailored Misorientation Angles

Grain boundaries have complex structural features that influence strength, ductility and fracture in metals and alloys. Grain boundary misorientation angle has been identified as a key parameter that controls their mechanical behavior, but the effect of misorientation angle has been challenging to isolate in polycrystalline materials. Here, we describe the use of bicrystal Au thin films made using a rapid melt growth process to study deformation at a single grain boundary. Tensile testing is performed on bicrystals with different misorientation angles using in situ TEM, as well as on a single crystalline sample. Plastic deformation is initiated through dislocation nucleation from free surfaces. Grain boundary sliding is not observed, and failure occurs away from the grain boundary through plastic collapse in all cases. The failure behavior in these nanoscale bicrystals does not appear to depend on the misorientation angle or grain boundary energy but instead has a more complex dependence on sample surface structure and dislocation activity.

36 MATERIALS SCIENCE↗
DOE OSTI2018

Radiation-induced extreme elastic and inelastic interactions in concentrated solid solutions

One of the biggest challenges in the radiation induced defect science is to understand the complex nature of ion-atom interactions under highly extreme conditions. Here, we report the irradiation induced non-equilibrium defect formation in NiCoCr single phase concentrated solid solution alloy due to (i) the extreme inelastic and (ii) the coupled inelastic and elastic ion-atom interactions. These two conditions are achieved at 5 and 30 μm penetration depths along the paths of swift heavy ions (1.542 GeV Bi). In general, the irradiation induced damage consists of interstitial-type dislocation loops and vacancy-type stacking fault tetrahedra (SFT). Near the surface (~5 μm) where electronic energy loss is dominating (~62.5 keV nm –1 ), the atomic motion primarily results in the formation of SFT. A noticeable increase of dislocation loop formation is observed at 30 μm near the maximum energy deposition from elastic interactions (~4.9 keV nm –1 ), as compared to the near surface region (~0.06 keV nm –1 ). As a result, insights on the complex electronic and atomic correlations of extreme energy deposition and dissipation on defect dynamics and structural stability may pave the way for new design principles of radiation–tolerant structural alloys.

36 MATERIALS SCIENCE↗
DOE OSTI2019

Photoelectron–Photofragment Coincidence Studies on the Dissociation Dynamics of the OH–CH 4 Complex

Photoelectron-photofragment coincidence (PPC) spectroscopy was used to characterize the energetics and dynamics of the OH + CH 4 → H 2 O + CH 3 reaction initiated by photodetachment of the OH – (CH 4 ) anion complex. PPC measurements at a photon energy of 3.20 eV yielded stable (OH-CH 4 + e – ) and dissociative (OH + CH 4 (ν 1 or ν 3 , v = 0, 1) + e – ) channels. The main channel is dissociation to OH + CH 4 + e – with a low kinetic energy release (KER), peaking at 0.04 eV. Interpretation of the experimental results was supported by quantum chemistry and quasiclassical trajectory calculations. Here, the anion potential energy surface was constructed at the correlated coupled cluster singles, doubles, and perturbative triples level with augmented correlation consistent polarized valence triple-zeta basis set, and previously calculated neutral potential energy surfaces were used. Quasiclassical simulation of the dynamics of the OH-CH 4 complex was carried out by selecting the momenta and coordinates from the Wigner distribution for the anion, providing the starting point for 4000 trajectories on the neutral potential energy surface. In agreement with the experimental results, most of the trajectories yield slowly recoiling OH + CH 4 reactants while some are trapped in the entrance channel van der Waals well.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2019

Langmuir turbulence and filament frontogenesis in the oceanic surface boundary layer

Submesoscale currents, small-scale turbulence and surface gravity waves co-exist in the upper ocean and interact in complex ways. To expose the couplings, the frontogenetic life cycle of an idealized cold dense submesoscale filament interacting with upper ocean Langmuir turbulence is investigated in large-eddy simulations (LESs) based on the incompressible wave-averaged equations. The simulations utilize large domains and fine meshes with $6.4\times 10^{9}$ grid points. Case studies are made with surface winds or surface cooling with waves oriented in across-filament (perpendicular) or down-filament (parallel) directions relative to the two-dimensional filament axis. The currents $u$ , $v$ and $w$ are aligned with the across-filament, down-filament and vertical directions, respectively. Frontogenesis is induced by across-filament Lagrangian secondary circulations in the boundary layer, and it is shown to be strongly impacted by surface waves, in particular the propagation direction relative to the filament axis. In a horizontally heterogeneous boundary layer, surface waves induce both mean and fluctuating Stokes-drift vortex forces that modify a linear, hydrostatic turbulent thermal wind (TTW) approximation for momentum. Down-filament winds and waves are found to be especially impactful, they significantly reduce the peak level of frontogenesis by fragmenting the filament into primary and secondary down-welling sites in a broad frontal zone over a width ${\sim}500~\text{m}$ . At peak frontogenesis, opposing down-filament jets $\langle v\rangle$ overlie each other resulting in a vigorous vertical shear layer $\unicode[STIX]{x2202}_{z}\langle v\rangle$ with large vertical momentum flux $\langle v^{\prime }w^{\prime }\rangle$ . Filament arrest is induced by a lateral shear instability that generates horizontal momentum flux $\langle u^{\prime }v^{\prime }\rangle$ at low wavenumbers. The turbulent vertical velocity patterns, indicative of coherent Langmuir cells, change markedly across the horizontal domain with both across-filament and down-filament winds under the action of submesoscale currents.

Mechanics↗
DOE OSTI2017

Surface phases of the transition-metal dichalcogenide IrTe 2

Transition-metal dichalcogenide IrTe 2 has attracted attention because of its striped lattice, charge ordering, and superconductivity. We have investigated the surface structure of IrTe 2 , using low-energy electron diffraction and scanning tunneling microscopy. A complex striped lattice modulation as a function of temperature is observed, which shows hysteresis between cooling and warming. While the bulk 5 × 1 and 8 × 1 phases appear at high temperatures, the surface ground state has the 6 × 1 phase, not seen in the bulk, and the surface transition temperatures are distinct from the bulk. Here, the broken symmetry at the surface creates a quite different phase diagram, with the coexistence of several periodicities resembling devil's staircase behavior.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗