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At least 1,657 records · Page 92

New Developments and Capabilities Within WEC-Sim: Preprint

WEC-Sim is an open-source software for simulating wave energy converters, which has been actively developed and applied since its initial release in 2014 to simulate a wide variety of device archetypes. WEC-Sim is developed jointly by the National Renewable Energy Laboratory (NREL) and Sandia National Laboratories (Sandia) within the MATLAB/SIMULINK environment. A general wave-to-wire model begins with a deployment site resource characterization, which is used to complete the hydrodynamic simulation of wave energy converters (WEC), with the power generation profile imported to a grid simulator to understand the influence on the local electrical network. While modeling the entire wave-to-wire is difficult and encompasses multiple time scales and physics, WEC-Sim is focused on the hydrodynamics simulation to predict, analyze, and optimize WEC dynamics and power performance. WEC-Sim simulations are performed in the time domain based on the radiation and diffraction method using hydrodynamics coefficients derived from boundary element method (BEM)-based frequency-domain potential flow solvers (e.g., WAMIT, NEMOH, Capytaine, or ANSYS-AQWA). With this level of modeling fidelity, WEC-Sim can handle floating body hydrodynamics, mechanical and electrical power generation methods, advanced control implementation, mooring systems, and other unique applications such as desalination. Additional WEC-Sim functionalities include pre-built Simulink blocks and MATLAB scripts that can simulate a wide range of floating systems and the corresponding auxiliary subsystems. The developers of WEC-Sim continue to release new versions of the software, at least annually, with our latest release in September 2022. These releases include bug fixes, updates to software documentation, as well as new features to expand WEC-Sim's capabilities to model a wide range of WEC concepts. This publication will highlight the new features added to WEC-Sim between versions 4.1.0 to 5.0.1 which spans over a two year period from June 2020 to September 2022. New features to be described will include topics such as continuous integration checks, revised Morison Element and nonlinear hydro implementations, run directly from Simulink (required for hardware-in-the-loop execution), BEMIO updates to import Capytaine BEM hydrodynamics, addition of cable blocks, and new wave visualization features.

TIDAL AND WAVE POWER↗

Treating network junctions in finite volume solution of transient gas flow models

A finite volume scheme for the numerical solution of a non-isothermal non-adiabatic compressible flow model for gas transportation networks on non-flat topography is introduced. Unlike standard Euler equations, the model takes into account wall friction, variable height and heat transfer between the pipe and the environment which are source terms. The case of one single pipe was considered in a previous reference by the authors, , where a finite volume method with upwind discretization of the flux and source terms has been proposed in order to get a well-balanced scheme. The main goal of the present paper is to go a step further by considering a network of pipes. The main issue is the treatment of junctions for which container-like 2D finite volumes are introduced. The couplings between pipes (1D) and containers (2D) are carefully described and the conservation properties are analyzed. Numerical tests including real gas networks are solved showing the performance of the proposed methodology.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

sNebula, a network-based algorithm to predict binding between human leukocyte antigens and peptides

Understanding the binding between human leukocyte antigens (HLAs) and peptides is important to understand the functioning of the immune system. Since it is time-consuming and costly to measure the binding between large numbers of HLAs and peptides, computational methods including machine learning models and network approaches have been developed to predict HLA-peptide binding. However, there are several limitations for the existing methods. We developed a network-based algorithm called sNebula to address these limitations. We curated qualitative Class I HLA-peptide binding data and demonstrated the prediction performance of sNebula on this dataset using leave-one-out cross-validation and five-fold cross-validations. Furthermore, this algorithm can predict not only peptides of different lengths and different types of HLAs, but also the peptides or HLAs that have no existing binding data. We believe sNebula is an effective method to predict HLA-peptide binding and thus improve our understanding of the immune system.

60 APPLIED LIFE SCIENCES↗

Stochastic availability analysis of operational data systems in the Deep Space Network

Existing availability models of standby redundant systems consider only an operator's performance and its interaction with the hardware performance. In the case of operational data systems in the Deep Space Network (DSN), in addition to an operator system interface, a controller reconfigures the system and links a standby unit into the network data path upon failure of the operating unit. A stochastic (Markovian) process technique is used to model and analyze the availability performance and occurrence of degradation due to partial failures are quantitatively incorporated into the model. Exact expressions of the steady state availability and proportion degraded performance measures are derived for the systems under study. The interaction among the hardware, operator, and controller performance parameters and that interaction's effect on data availability are evaluated and illustrated for an operational data processing system.

Issa, T. N.↗

Indoor Occupancy Sensing via Networked Nodes (2012–2022): A Review

In the past decade, different sensing mechanisms and algorithms have been developed to detect or estimate indoor occupancy. One of the most recent advancements is using networked sensor nodes to create a more comprehensive occupancy detection system where multiple sensors can identify human presence within more expansive areas while delivering enhanced accuracy compared to a system that relies on stand-alone sensor nodes. The present work reviews the studies from 2012 to 2022 that use networked sensor nodes to detect indoor occupancy, focusing on PIR-based sensors. Methods are compared based on pivotal ADPs that play a significant role in selecting an occupancy detection system for applications such as Health and Safety or occupant comfort. These parameters include accuracy, information requirement, maximum sensor failure and minimum observation rate, and feasible detection area. We briefly describe the overview of occupancy detection criteria used by each study and introduce a metric called “sensor node deployment density” through our analysis. This metric captures the strength of network-level data filtering and fusion algorithms found in the literature. It is hinged on the fact that a robust occupancy estimation algorithm requires a minimal number of nodes to estimate occupancy. This review only focuses on the occupancy estimation models for networked sensor nodes. It thus provides a standardized insight into networked nodes’ occupancy sensing pipelines, which employ data fusion strategies, network-level machine learning algorithms, and occupancy estimation algorithms. This review thus helps determine the suitability of the reviewed methods to a standard set of application areas by analyzing their gaps.

Emad-Ud-Din, Muhammad (ORCID:0000000279515538)↗

Deep anomaly detection for industrial systems: a case study

We explore the use of deep neural networks for anomaly detection of industrial systems where the data are multivariate time series measurements. We formulate the problem as a self-supervised learning where data under normal operation are used to train a deep neural network autoregressive model, i.e., use a window of time series data to predict future data values. The aim of such a model is to learn to represent the system dynamic behavior under normal conditions, while expect higher model vs. measurement discrepancies under faulty conditions. In real world applications, many control settings are discrete in nature. In this paper, vector embedding and joint losses are employed to deal with such situations. Both LSTM and CNN based deep neural network backbones are studied on the Secure Water Treatment (SWaT) testbed datasets. Also, Support Vector Data Description (SVDD) method is adapted to such anomaly detection settings with deep neural networks. Evaluation methods and results are discussed based on the SWaT dataset along with potential pitfalls.

anomaly detection, deep neural network↗

Hierarchical modeling of molecular energies using a deep neural network

In this work, we introduce the Hierarchically Interacting Particle Neural Network (HIP-NN) to model molecular properties from datasets of quantum calculations. Inspired by a many-body expansion, HIP-NN decomposes properties, such as energy, as a sum over hierarchical terms. These terms are generated from a neural network—a composition of many nonlinear transformations—acting on a representation of the molecule. HIP-NN achieves the state-of-the-art performance on a dataset of 131k ground state organic molecules and predicts energies with 0.26 kcal/mol mean absolute error. Finally, with minimal tuning, our model is also competitive on a dataset of molecular dynamics trajectories. In addition to enabling accurate energy predictions, the hierarchical structure of HIP-NN helps to identify regions of model uncertainty.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Recent Developments in the WEC-Sim Open-Source Design Tool: Preprint

WEC-Sim (Wave Energy Converter SIMulator) is an open-source code for simulating wave energy converters, which has been actively developed and applied to simulate a wide variety of device archetypes and has become a popular tool since its initial release in 2014. WEC-Sim is developed jointly by the National Renewable Energy Laboratory (NREL) and Sandia National Laboratories (SNL) within the MATLAB/SIMULINK environment. Figure 1 illustrates a general wave-to-wire model which begins with a deployment site resource characterization, which is used to complete the hydrodynamic simulation of a single WEC (or array), with the power generation profile imported to a grid simulator to understand the influence on the local electrical network. While modelling the entire wave-to-wire is difficult and encompass multiple time scales and physics, WEC-Sim is focused on the hydrodynamics simulation to predict, analyze and optimize WEC dynamics and power performance. WEC-Sim simulations are performed in the time domain based on the radiation and diffraction method using hydrodynamics coefficients derived from boundary element method (BEM) based-frequency-domain potential flow solvers (e.g., WAMIT, NEMOH, Capytaine, or ANSYS-AQWA). Within this level of modeling fidelity, WEC-Sim can handle floating body hydrodynamics, mechanical and electrical power generation methods, advanced control implementation, mooring systems, and other unique applications such as desalination. Table 1 lists additional WEC-Sim functionalities, which are created using prebuilt Simulink blocks and MATLAB scripts that can simulate a wide range of floating systems and the corresponding auxiliary subsystems.

hydrodynamics modeling↗

DEEP NEURAL NETWORKS FOR NON-LINEAR MODEL-BASED ULTRASOUND RECONSTRUCTION

Ultrasound reflection tomography is widely used to image large complex specimens that are only accessible from a single side, such as well systems and nuclear power plant containment walls. Typical methods for inverting the measurement rely on delay-and-sum algorithms that rapidly produce reconstructions but with significant artifacts. Recently, model-based reconstruction approaches using a linear forward model have been shown to significantly improve image quality compared to the conventional approach. Nonetheless, even these techniques result in artifacts for complex objects because of the inherent non-linearity of the ultrasound forward model.In this paper, we propose a non-iterative model-based reconstruction method for inverting measurements that are based on non-linear forward models for ultrasound imaging. Our approach involves obtaining an approximate estimate of the reconstruction using a simple linear back-projection and training a deep neural network to refine this to the actual reconstruction. As a result, we apply our method to simulated and experimental ultrasound data to demonstrate dramatic improvements in image quality compared to the delay-and-sum approach and the linear model-based reconstruction approach.

97 MATHEMATICS AND COMPUTING↗

Quantifying Economic and Environmental Impacts of Transportation Network Disruptions with Dynamic Traffic Simulation

Several transportation network vulnerability models have been proposed. However, most only consider disruptions as a static snapshot in time and the impact on total travel time. These approaches cannot consider the time-varying nature of travel demand nor other undesirable outcomes that follow from transportation network disruptions. This paper proposes an algorithmic approach to assess the vulnerability of a transportation network that considers the time-varying demand with an open source dynamic transportation simulation tool. The open source nature of the tool allows us to systematically consider many disruption scenarios and quantitatively compare their relative criticality. This is far more efficient than traditional approaches which would require days or weeks of a transportation engineers time to manually set up, run, and assess these simulations. In addition to travel time, we also collect statistics on additional fuel consumed and the corresponding carbon dioxide emissions. Our approach, thus provides a more systematic approach that is both time-varying and can consider additional negative consequences of disruptions for decision makers to evaluate.

Shekar, Venkateswaran↗

Crop weather models of corn and soybeans for Agrophysical Units (APU's) in Iowa using monthly meteorological predictors

Models based on multiple regression were developed to estimate corn and soybean yield from weather data for agrophysical units (APU) in Iowa. The predictor variables are derived from monthly average temperature and monthly total precipitation data at meteorological stations in the cooperative network. The models are similar in form to the previous models developed for crop reporting districts (CRD). The trends and derived variables were the same and the approach to select the significant predictors was similar to that used in developing the CRD models. The APU's were selected to be more homogeneous with respect crop to production than the CRDs. The APU models are quite similar to the CRD models, similar explained variation and number of predictor variables. The APU models are to be independently evaluated and compared to the previously evaluated CRD models. That comparison should indicate the preferred model area for this application, i.e., APU or CRD.

Leduc, S.↗

The bond rupture force for sulfur chains calculated from quantum chemistry simulations and its relevance to the tensile strength of vulcanized rubber

From quantum chemistry simulations using density functional theory, we obtain the total electronic energy of an eight-atom sulfur chain as its end-to-end distance is extended until S–S bond rupture occurs. We find that a sulfur chain can be extended by about 40% beyond its nominally straight conformation, where it experiences rupture at an end-to-end tension of about 1.5 nN. Using this rupture force as the chain failure limit in an explicit polymer network simulation model (EPnet), we predict the tensile failure stress for sulfur crosslinked (vulcanized) natural rubber. Furthermore, quantitative agreement with published experimental data for the failure stress is obtained in these simulations if we assume that only about 30% of the sulfur chains produce viable network crosslinks. Surprisingly, we also find that the failure stress of a rubber network does not scale linearly with the chain failure force limit.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Development of a Deep Learning Model for Predicting the Drag Coefficients of Spherical and Non-Spherical Particles,

There is yet to be a well-established drag model for non-spherical particles required in a particle-laden flow that could cover a wide range of sphericities. This talk will explore the development of a general drag model for non-spherical particles by applying deep learning using available experimental data available in the literature. The integration of several raw experimental measurements from different sources and research directions allows the training of robust Artificial Intelligence and Machine Learning (ML) models. Neural networks are an ML approach inspired by the inner biological workings of the brain. This work aims to develop a Deep Neural Network (DNN) that predicts drag coefficient values with the ability to adapt appropriately to unseen data. Given the limited number of data points available and the variance found within the data collected from various sources, challenges may arise when looking to train the model. Our study tests and implements various model regularization techniques and assesses different loss and activation functions for the proposed DNN. The proposed model considers a broader range of features other than sphericity and Reynold number. These features include density ratio, solid volume fraction, lengthwise and crosswise sphericity, and more. Furthermore, we present the features that play a significant role in predicting different drag coefficients through feature importance. Within the investigated parameter ranges in this study, the following conclusions can be achieved and summarized below: • An improved drag coefficient model can be developed by considering more features such as, aspect ratio, lengthwise sphericity, crosswise sphericity, and density ratio. • DNN model can predict better results compared to traditional methods using MAE metric. • The proposed model addresses data challenges such as limited data and extreme data points through expanded feature-set and regularization. • Three major features that mostly affect the drag coefficient were identified from a feature importance analysis.

Presa-Reyes, Maria↗

Global Distortion of GPS Networks Associated with Satellite Antenna Model Errors

Recent studies of the GPS satellite phase center offsets (PCOs) suggest that these have been in error by approx.1 m. Previous studies had shown that PCO errors are absorbed mainly by parameters representing satellite clock and the radial components of site position. On the basis of the assumption that the radial errors are equal, PCO errors will therefore introduce an error in network scale. However, PCO errors also introduce distortions, or apparent deformations, within the network, primarily in the radial (vertical) component of site position that cannot be corrected via a Helmert transformation. Using numerical simulations to quantify the effects of PC0 errors, we found that these PCO errors lead to a vertical network distortion of 6-12 mm per meter of PCO error. The network distortion depends on the minimum elevation angle used in the analysis of the GPS phase observables, becoming larger as the minimum elevation angle increases. The steady evolution of the GPS constellation as new satellites are launched, age, and are decommissioned, leads to the effects of PCO errors varying with time that introduce an apparent global-scale rate change. We demonstrate here that current estimates for PCO errors result in a geographically variable error in the vertical rate at the 1-2 mm/yr level, which will impact high-precision crustal deformation studies.

Cardellach, E.↗

Crop weather models of barley and spring wheat yield for agrophysical units in North Dakota

Models based on multiple regression were developed to estimate barley yield and spring wheat yield from weather data for Agrophysical units(APU) in North Dakota. The predictor variables are derived from monthly average temperature and monthly total precipitation data at meteorological stations in the cooperative network. The models are similar in form to the previous models developed for Crop Reporting Districts (CRD). The trends and derived variables were the same and the approach to select the significant predictors was similar to that used in developing the CRD models. The APU models show sight improvements in some of the statistics of the models, e.g., explained variation. These models are to be independently evaluated and compared to the previously evaluated CRD models. The comparison will indicate the preferred model area for this application, i.e., APU or CRD.

Leduc, S.↗

Supervised learning and the finite-temperature string method for computing committor functions and reaction rates

A central object in the computational studies of rare events is the committor function. Though costly to compute, the committor function encodes complete mechanistic information of the processes involving rare events, including reaction rates and transition-state ensembles. Under the framework of transition path theory, Rotskoff et al. [Proceedings of the 2nd Mathematical and Scientific Machine Learning Conference, Proceedings of Machine Learning Research (PLMR, 2022), Vol. 145, pp. 757–780] proposes an algorithm where a feedback loop couples a neural network that models the committor function with importance sampling, mainly umbrella sampling, which collects data needed for adaptive training. Here, in this work, we show additional modifications are needed to improve the accuracy of the algorithm. The first modification adds elements of supervised learning, which allows the neural network to improve its prediction by fitting to sample-mean estimates of committor values obtained from short molecular dynamics trajectories. The second modification replaces the committor-based umbrella sampling with the finite-temperature string (FTS) method, which enables homogeneous sampling in regions where transition pathways are located. We test our modifications on low-dimensional systems with non-convex potential energy where reference solutions can be found via analytical or finite element methods, and show how combining supervised learning and the FTS method yields accurate computation of committor functions and reaction rates. We also provide an error analysis for algorithms that use the FTS method, using which reaction rates can be accurately estimated during training with a small number of samples. The methods are then applied to a molecular system in which no reference solution is known, where accurate computations of committor functions and reaction rates can still be obtained.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗