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At least 1,675 records · Page 93

In and out of the minor groove: interaction of an AT-rich DNA with the drug CD27

New features of an antiprotozoal DNA minor-groove binding drug, which acts as a cross-linking agent, are presented. It also fills the minor groove of DNA completely and prevents the access of proteins. These features are also expected for other minor-groove binding drugs when associated with suitable DNA targets. The DNA of several pathogens is very rich in AT base pairs. Typical examples include the malaria parasite Plasmodium falciparum and the causative agents of trichomoniasis and trypanosomiases. This fact has prompted studies of drugs which interact with the minor groove of DNA, some of which are used in medical practice. Previous studies have been performed almost exclusively with the AATT sequence. New features should be uncovered through the study of different DNA sequences. In this paper, the crystal structure of the complex of the DNA duplex d(AAAATTTT){sub 2} with the dicationic drug 4, 4′-bis(imidazolinylamino)diphenylamine (CD27) is presented. The drug binds to the minor groove of DNA as expected, but it shows two new features that have not previously been described: (i) the drugs protrude from the DNA and interact with neighbouring molecules, so that they may act as cross-linking agents, and (ii) the drugs completely cover the whole minor groove of DNA and displace bound water. Thus, they may prevent the access to DNA of proteins such as AT-hook proteins. These features are also expected for other minor-groove binding drugs when associated with all-AT DNA. These findings allow a better understanding of this family of compounds and will help in the development of new, more effective drugs. New data on the biological interaction of CD27 with the causative agent of trichomoniasis, Trichomonas vaginalis, are also reported.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Phase evolution and magnetic properties of HoIn{sub 3−x}Co{sub x}

The phase evolution of HoIn{sub 3−x}Co{sub x} exhibits the phase transformations from the original HoIn{sub 3} with cubic structure to the intermediated HoCo{sub 2}In with orthorhombic structure and to the final HoCo{sub 3} with rhombohedral structure. The corresponding magnetic states are found to closely associate with the structural phase transformation of HoIn{sub 3−x}Co{sub x}.With increasing Co contents, HoIn{sub 3−x}Co{sub x} are paramagnetic in region of x < 0.6, mixture of paramagnetic and ferromagnetic in range of 0.6 < x < 1.8, and ferromagnetic in range of 3 > x > 2.4 at room temperature, respectively. The field dependence of magnetization curves follows an equation of M=M{sub s}(1−a/H )+χH, where M{sub s} and χ are corresponding to the saturation moment and susceptibility; a is a parameter related to the external field. The fitting results show that the susceptibility increases with increasing Co contents and M{sub s} depends upon the Co content as well. It implies that the evolution of magnetic phases in HoIn{sub 3−x}Co{sub x} might originate from the change of exchange interaction from the one between the isolated Co spins and the surrounding conduction electrons in Co-poor regime to the one between Co-Co pairs mediated by the conduction electrons in Co-rich regime.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

The Structure of Liquid and Amorphous Hafnia

Understanding the atomic structure of amorphous solids is important in predicting and tuning their macroscopic behavior. Here, we use a combination of high-energy X-ray diffraction, neutron diffraction, and molecular dynamics simulations to benchmark the atomic interactions in the high temperature stable liquid and low-density amorphous solid states of hafnia. The diffraction results reveal an average Hf–O coordination number of ~7 exists in both the liquid and amorphous nanoparticle forms studied. The measured pair distribution functions are compared to those generated from several simulation models in the literature. We have also performed ab initio and classical molecular dynamics simulations that show density has a strong effect on the polyhedral connectivity. The liquid shows a broad distribution of Hf–Hf interactions, while the formation of low-density amorphous nanoclusters can reproduce the sharp split peak in the Hf–Hf partial pair distribution function observed in experiment. The agglomeration of amorphous nanoparticles condensed from the gas phase is associated with the formation of both edge-sharing and corner-sharing HfO6,7 polyhedra resembling that observed in the monoclinic phase.

36 MATERIALS SCIENCE↗

Direct Probe of the Interior of an Electric Pion in a Cooper Pair Superinsulator.

The nature of hadrons is one of the most fundamental mysteries of physics. It is generally agreed that they are made of "colored" quarks, which move nearly free at short scales but are confined inside hadrons by strong interactions at large distances. Because of confinement, quarks are never directly observable and, experimentally, their properties can be tested only indirectly, via high energy collisions. Here we show that superinsulating films realize a complete, one-color model system of hadron physics with Cooper pairs playing the role of quarks. We report measurements on highly controlled NbTiN films that provide a window into the interior of "Cooper pair mesons" and present the first direct evidence of asymptotic freedom, `t Hooft's dual superconductivity confinement mechanism, and magnetic monopoles.

Diamantini, M. C.↗

Sub-millitesla magnetic field effects on the recombination reaction of flavin and ascorbic acid radicals

Even though the interaction of a <1 mT magnetic field with an electron spin is less than a millionth of the thermal energy at room temperature (k{sub B}T), it still can have a profound effect on the quantum yields of radical pair reactions. We present a study of the effects of sub-millitesla magnetic fields on the photoreaction of flavin mononucleotide with ascorbic acid. Direct control of the reaction pathway is achieved by varying the rate of electron transfer from ascorbic acid to the photo-excited flavin. At pH 7.0, we verify the theoretical prediction that, apart from a sign change, the form of the magnetic field effect is independent of the initial spin configuration of the radical pair. The data agree well with model calculations based on a Green’s function approach that allows multinuclear spin systems to be treated including the diffusive motion of the radicals, their spin-selective recombination reactions, and the effects of the inter-radical exchange interaction. The protonation states of the radicals are uniquely determined from the form of the magnetic field-dependence. At pH 3.0, the effects of two chemically distinct radical pair complexes combine to produce a pronounced response to ∼500 μT magnetic fields. These findings are relevant to the magnetic responses of cryptochromes (flavin-containing proteins proposed as magnetoreceptors in birds) and may aid the evaluation of effects of weak magnetic fields on other biologically relevant electron transfer processes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

helixCAM: A platform for programmable cellular assembly in bacteria and human cells

Interactions between cells are indispensable for signaling and creating structure. The ability to direct precise cell-cell interactions would be powerful for engineering tissues, understanding signaling pathways, and directing immune cell targeting. In humans, intercellular interactions are mediated by cell adhesion molecules (CAMs). However, endogenous CAMs are natively expressed by many cells and tend to have cross-reactivity, making them unsuitable for programming specific interactions. Here, we showcase “helixCAM,” a platform for engineering synthetic CAMs by presenting coiled-coil peptides on the cell surface. helixCAMs were able to create specific cell-cell interactions and direct patterned aggregate formation in bacteria and human cells. Based on coiled-coil interaction principles, we built a set of rationally designed helixCAM libraries, which led to the discovery of additional high-performance helixCAM pairs. Finally, we applied this helixCAM toolkit for various multicellular engineering applications, such as spherical layering, adherent cell targeting, and surface patterning.

59 BASIC BIOLOGICAL SCIENCES↗

Measurements of differential two-particle number and transverse momentum correlation functions in pp collisions at $\sqrt{\textit{s}}$ = 13 TeV

Differential two-particle normalized cumulants (R 2 ) and transverse momentum correlations (P 2 ) are measured as a function of the relative pseudorapidity and azimuthal angle difference (Δη, Δφ) of charged particle pairs in minimum bias pp collisions at $\sqrt{s}$ = 13 TeV. The measurements use charged hadrons in the pseudorapidity region of |η| < 0.8 and the transverse momentum range 0.2 < p T < 2.0 in order to focus on soft multiparticle interactions and to complement prior measurements of these correlation functions in p–Pb and Pb–Pb collisions. The correlation functions are reported for both unlike-sign and like-sign pairs and their charge-independent and charge-dependent combinations. Both the R 2 and P 2 measured in pp collisions exhibit features qualitatively similar to those observed in p–Pb and Pb–Pb collisions. The Δη and Δφ root mean square widths of the near-side peak of the correlation functions are evaluated and compared with those observed in p–Pb and Pb–Pb collisions and show smooth evolution with the multiplicity of charged particles produced in the collision. The comparison of the measured correlation functions with predictions from PYTHIA8 shows that this model qualitatively captures their basic structure and characteristics but feature important differences. In addition, the R$^{CD}_{2}$ is used to determine the charge balance function of hadrons produced within the detector acceptance of the measurements. The integral of the balance function is found to be compatible with those reported by a previous measurement in Pb–Pb collisions.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Studies of new Higgs boson interactions through nonresonant $HH$ production in the $ b\overline{b}\gamma \gamma $ final state in $pp$ collisions at $ \sqrt{s} $ = 13 TeV with the ATLAS detector

A search for nonresonant Higgs boson pair production in the $ b\overline{b}\gamma \gamma $ final state is performed using 140 fb –1 of proton-proton collisions at a centre-of-mass energy of 13 TeV recorded by the ATLAS detector at the CERN Large Hadron Collider. This analysis supersedes and expands upon the previous nonresonant ATLAS results in this final state based on the same data sample. The analysis strategy is optimised to probe anomalous values not only of the Higgs (H) boson self-coupling modifier κλ but also of the quartic HHVV (V = W, Z) coupling modifier κ 2V . No significant excess above the expected background from Standard Model processes is observed. An observed upper limit μHH < 4.0 is set at 95% confidence level on the Higgs boson pair production cross-section normalised to its Standard Model prediction. The 95% confidence intervals for the coupling modifiers are –1.4 < κ λ < 6.9 and –0.5 < κ 2V < 2.7, assuming all other Higgs boson couplings except the one under study are fixed to the Standard Model predictions. The results are interpreted in the Standard Model effective field theory and Higgs effective field theory frameworks in terms of constraints on the couplings of anomalous Higgs boson (self-)interactions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

First Measurement of Differential Charged Current Quasielastic-like $\nu_\mu$–Argon Scattering Cross Sections In Kinematic Imbalance Variables With The MicroBooNE Detector

We report the first measurement of flux-integrated multi-differential cross sections for charged-current events with muon neutrinos scattering on argon with solely a muon and a single proton in the final state as a function of kinematic imbalance variables. The measurement was carried out using the Booster Neutrino Beam at Fermi National Accelerator Laboratory within the MicroBooNE Liquid Argon Time Projection Chamber detector with an exposure of 6.79 × 10 20 protons on target. Events were selected to enhance the contribution of charged-current mesonless interactions with one proton detected in the final state. The data discussed here are reported in terms of multidifferential cross sections in kinematic imbalance variables, which are generally sensitive to nuclear effects. The double-differential results in these variables can provide an excellent handle to disentagle specific nuclear aspects not easily isolated via single differential cross sections. Our results pave a path towards identifying regions of the phase-space where future interaction modeling development and Monte Carlo neutrino generator tuning efforts should concentrate. EVENT SELECTION Neutrino oscillation measurements aim to extract neutrino mixing angles, mass differences, the value of the chargeparity violating phase in the lepton sector, and to search for new physics beyond the Standard Model [1, 2]. For that to be achieved, an unprecedented understanding of neutrino-argon interactions is of utmost importance since a growing number of neutrino oscillation experiments employ Liquid Argon Time Projector Chamber (LArTPC) neutrino detectors [3–6]. The accuracy to which these experiments can extract neutrino oscillation parameters requires a good understanding of the neutrino energy. Experimentally, this energy is deduced from the measured kinetic energies of particles that are emitted following the neutrino interaction in the detector. The kinematic properties of such finalstate particles reflect complex dynamics due to nuclear and initial-state effects of the interaction [7]. However, certain categories of nuclear effects can be isolated by variables built specifically to characterize the degeneracy between such effects [8–10]. This note reports cross sections in kinematic variables sensitive to nuclear effects using events with one detected muon with momentum 0.1 < pµ < 1.2 GeV/c, and exactly one proton with 0.3 < pp < 1 GeV/c. This signal definition includes events with any number of protons below 300 MeV/c, neutrons at any momenta, and charged pions with momentum lower than 70 MeV/c. This choice is guided by the fact that their experimental signature of correlated muon-proton pairs is fairly straightforward to reconstruct [11–22]. Such events primarily originate from chargedcurrent (CC) neutrino-nucleon quasielastic (QE) scattering interactions where the neutrino removes a single intact nucleon from the nucleus without producing any additional particles. This definition can also include contributions from interactions that lead to the production of additional particles that are absent from the final state due to nuclear effects, such as pion absorption, or have momenta that are below the experimental detection threshold.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes

Although secondary metabolites are typically associated with competitive or pathogenic interactions, the high bioactivity of endophytic fungi in the Xylariales, coupled with their abundance and broad host ranges spanning all lineages of land plants and lichens, suggests that enhanced secondary metabolism might facilitate symbioses with phylogenetically diverse hosts. Here, we examined secondary metabolite gene clusters (SMGCs) across 96 Xylariales genomes in two clades (Xylariaceae s.l. and Hypoxylaceae), including 88 newly sequenced genomes of endophytes and closely related saprotrophs and pathogens. We paired genomic data with extensive metadata on endophyte hosts and substrates, enabling us to examine genomic factors related to the breadth of symbiotic interactions and ecological roles. All genomes contain hyperabundant SMGCs; however, Xylariaceae have increased numbers of gene duplications, horizontal gene transfers (HGTs) and SMGCs. Enhanced metabolic diversity of endophytes is associated with a greater diversity of hosts and increased capacity for lignocellulose decomposition. Our results suggest that, as host and substrate generalists, Xylariaceae endophytes experience greater selection to diversify SMGCs compared with more ecologically specialised Hypoxylaceae species. Altogether, our results provide new evidence that SMGCs may facilitate symbiosis with phylogenetically diverse hosts, highlighting the importance of microbial symbioses to drive fungal metabolic diversity.

59 BASIC BIOLOGICAL SCIENCES↗

Mass-Energy Compensation Effect of 3$\alpha$ Hamiltonian

The 3α phenomenological model describes the structure of the carbon-12 nucleus as a cluster of three alpha particles. This model includes a pairwise α–α interaction and a three-body force. To fit the three-body potential, the 12 C data are used, while ensuring that the pair potential reproduces the α–α scattering data. Alternatively, the mass-energy compensation (MEC) effect can be used to simulate the effect of the three-body potential by adjusting the mass of the α particle within the effective-mass approach. We demonstrate the MEC effect for the 3α ground state by numerically solving the differential Faddeev equation, in which the α–α interaction is described by the Ali-Bodmer potential. The effective masses of α particles are evaluated for the ground and excited 0 + and bound 2 + states. Here, we demonstrate a coupling between the ground and first excited 0 + states, indicated by an anti-crossing of these energy levels in the energy–mass coordinates. A correspondence between the effective mass and a three-body potential is demonstrated. We discuss the results of the 0$^{+}_{2}$ calculations for various models of the α–α interaction.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Temperature-driven BCS-BEC crossover and Cooper-paired metallic phase in coupled boson-fermion systems

Motivated by strongly correlated and frustrated systems, in this work we propose an effective model that describes the dynamics of pairs of opposite spin fermions scattering from localized bosons. Integrating out one of the degrees, either the bosons or fermions, generates temperature-dependent long-range effective interactions between the entities that we investigate using Monte Carlo techniques. The behavior of bosons is dominated by vortex-antivortex unbinding, with effective interboson interactions beyond the nearest-neighbor Josephson coupling of phases. Remarkably, in the fermion sector we observe a temperature-driven phase transition from a SC phase with a “BCS” spectral function that shows a gap minimum on the underlying Fermi surface to a conducting phase of pairs but with a “BEC” spectral function with a gap minimum at k = 0. Tunneling and angle-resolved photoemission spectroscopy on Bose-Fermi mixtures in cold atomic systems and superconducting islands on graphene are some of the promising experimental platforms to test our predictions.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Kinetic mixing, dark photons and extra dimensions. Part II: fermionic dark matter

Extra dimensions can be very useful tools when constructing new physics models. Previously, we began investigating toy models for the 5-D analog of the kinetic mixing/vector portal scenario where the interactions of bulk dark matter with the brane-localized fields of the Standard Model are mediated by a massive U(1) D dark photon also living in the bulk. In that setup, where the dark matter was taken to be a complex scalar, a number of nice features were obtained such as U(1) D breaking by boundary conditions without the introduction of a dark Higgs field, the absence of potentially troublesome SM Higgs-dark singlet mixing, also by boundary conditions, the natural similarity of the dark matter and dark photon masses and the decoupling of the heavy gauge Kaluza-Klein states from the Standard Model. In the present paper we extend this approach by examining the more complex cases of Dirac and Majorana fermionic dark matter. In particular, we discuss a new mechanism that can occur in 5-D (but not in 4-D) that allows for light Dirac dark matter in the ~ 100 MeV mass range, even though it has an s-wave annihilation into Standard Model fields, by avoiding the strong constraints that arise from both the CMB and 21 cm data. This mechanism makes use of the presence of the Kaluza-Klein excitations of the dark photon to extremize the increase in the annihilation cross section usually obtained via resonant enhancement. In the Majorana dark matter case, we explore the possibility of a direct s-channel dark matter pair-annihilation process producing the observed relic density, due to the general presence of parity-violating dark matter interactions, without employing the usual co-annihilation mechanism which is naturally suppressed in this 5-D setup.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Cooperative Stereoinduction in Asymmetric Photocatalysis

Stereoinduction in complex organic reactions often involves the influence of multiple stereocontrol elements. The interaction among these can often result in the observation of significant cooperative effects that afford different rates and selectivities between the matched and mismatched sets of stereodifferentiating chiral elements. The elucidation of matched/mismatched effects in ground-state chemical reactions was a critically important theme in the maturation of modern stereocontrolled synthesis. The development of robust methods for the control of photochemical reactions, however, is a relatively recent development, and similar cooperative stereocontrolling effects in excited-state enantioselective photoreactions have not previously been documented. Herein, we describe a tandem chiral photocatalyst/Brønsted acid strategy for highly enantioselective [2 + 2] photocycloadditions of vinylpyridines. Importantly, the matched and mismatched chiral catalyst pairs exhibit different reaction rates and enantioselectivities across a range of coupling partners. We observe no evidence of ground-state interactions between the catalysts and conclude that these effects arise from their cooperative behavior in a transient excited-state assembly. Furthermore, these results suggest that similar matched/mismatched effects might be important in other classes of enantioselective dual-catalytic photochemical reactions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Frontiers of Ionic Liquids in Carbon Dioxide Separation and Valorization

Ionic liquids (ILs) have emerged as highly tunable sorbents and membranes for gas separation, especially in the purification of CO 2 -containing gas streams such as air, natural gas, biogas, and syngas. Their negligible volatility, high thermal stability, and chemical versatility position them as promising alternatives to conventional amine and alkaline metal derivative-based systems, effectively addressing key challenges such as volatility, stability, and high regeneration energy. Here, this Review explores IL-derived systems for CO 2 -related gas separation across dense, porous, and supported categories. At the dense liquid level, we discuss strategies for tailoring IL properties to optimize CO 2 sorption, focusing on the correlation between IL-CO 2 interaction strength, uptake capacity, and regeneration energy. Key advancements in carbon capture, including amino-functionalized (AILs) and superbase-derived ILs (SILs), are highlighted, along with strategies such as chemical structure engineering, multiple binding site integration, alternative driving force exploration, and stability enhancement. Then, the porous liquids (PLs) scale focuses on the emerging field integrating IL properties with permanent porosity engineering, spanning ultramicropores (<5 Å) to macropores (around 100 nm). These innovations improve gas uptake capacity, accelerate transport kinetics, introduce the gating effect, and enable the coexistence of active sites with antagonistic properties within a single IL medium. At the supported IL scale, the discussion shifts to IL- and ionic pair-modified sorbents and membranes, emphasizing the modulation of cations and anions, confinement effects from porous supports, and the IL–interface interaction to enhance CO 2 separation performance, particularly in diluted gas streams. Beyond separation, this Review highlights IL-based integrated processes for CO 2 capture and conversion into value-added chemicals via thermocatalytic, electrocatalytic, and photocatalytic pathways. At each scale, advanced computational and experimental tools for IL design are also discussed, providing insights into stability enhancement, sorption efficiency, and process integration. The Review concludes by addressing existing challenges and outlining future directions for IL-driven innovations in gas separation technologies.

Qiu, Liqi [Univ. of Tennessee, Knoxville, TN (Unit↗

Hadronic interaction model sibyll 2.3d and extensive air showers

We present a new version of the hadron interaction event generator SIBYLL. While the core ideas of the model have been preserved, the new version handles the production of baryon pairs and leading particles in a new way. In addition, production of charmed hadrons is included. Updates to the model are informed by high-precision measurements of the total and inelastic cross sections with the forward detectors at the LHC that constrain the extrapolation to ultrahigh energy. Minimum-bias measurements of particle spectra and multiplicities support the tuning of fragmentation parameters. This paper demonstrates the impact of these changes on air-shower observables such as X max and N μ , drawing comparisons with other contemporary cosmic-ray interaction models.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Pair Fluctuation Effects on Quasiparticle Transport in Fermi Systems

The leading corrections to Fermi liquid theory for non-equilibrium quasiparticle transport near a Cooper instability arise from the virtual emission and absorption of incipient Cooper pairs. We formulate the corrections to the Landau-Boltzmann transport equation starting from Keldysh's field theory for non-equilibrium, strongly interacting Fermions. The theory is applicable to quasiparticle transport in conventional and unconventional superconductors, dense nuclear matter and the low temperature phases of liquid $^3$He. Validation of the theory is provided by our analysis, and quantitative agreement between theory and experiment, of the excess attenuation of zero sound in liquid $^3$He near the superfluid transition. We propose an additional experimental test of the theory based on the effects of a Zeeman field on the spectrum of pairing fluctuations for the Cooper instability in spin-triplet superfluids.

Lin, Wei-Ting↗

Charge carrier dynamics and surface plasmon interaction in gold nanorod-blended organic solar cell

The inclusion of plasmonic nanoparticles into organic solar cell enhances the light harvesting properties that lead to higher power conversion efficiency without altering the device configuration. This work defines the consequences of the nanoparticle overloading amount and energy transfer process between gold nanorod and polymer (active matrix) in organic solar cells. We have studied the hole population decay dynamics coupled with gold nanorods loading amount which provides better understanding about device performance limiting factors. The exciton and plasmon together act as an interacting dipole; however, the energy exchange between these two has been elucidated via plasmon resonance energy transfer (PRET) mechanism. Further, the charge species have been identified specifically with respect to their energy levels appearing in ultrafast time domain. The specific interaction of these charge species with respective surface plasmon resonance mode, i.e., exciton to transverse mode of oscillation and polaron pair to longitudinal mode of oscillations, has been explained. Thus, our analysis reveals that PRET enhances the carrier population density in polymer via non-radiative process beyond the concurrence of a particular plasmon resonance oscillation mode and polymer absorption range. These findings give new insight and reveal specifically the factors that enhance and control the performance of gold nanorods blended organic solar cells. This work would lead in the emergence of future plasmon based efficient organic electronic devices.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗