NIMBLE. A data management and visualization framework for large scale engineering and science VVUQ applications
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96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗
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Results for “Computer Science - Operating Systems”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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An Analysis of Equity and Equality Constraints on Power System Planning
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Engineering - Power transmission and distribution,↗
Advanced Computing Annual Report 2023
In 2023, advanced computing saw the arrival of Kestrel, the National Renewable Energy Laboratory's (NREL's) newest high-performance computing (HPC) system. Kestrel will accelerate clean energy research at a pace and scale more than five times greater than Eagle, with approximately 44 petaflops of computing power. Kestrel's heterogeneous architecture - which includes both CPU-only and GPU-accelerated nodes - is designed to bring a much greater GPU capacity to EERE workloads compared to Eagle, enabling rapidly advancing applications in artificial intelligence and expanding research in new directions for computing. In Fiscal Year (FY) 2023, 333 projects utilized NREL's HPC system, advancing the U.S. Department of Energy's (DOE's) Office of Energy Efficiency and Renewable Energy (EERE) mission across 13 funding areas. Cross-disciplinary collaboration among researchers yielded more than 800 technical outputs, including 177 peer-reviewed journal articles in FY 2023. All this great work continues to advance the science of energy efficiency and renewable energy. This report highlights research that utilized HPC resources in FY 2023.
advanced computing↗
Bayes_Opt-SWMM: A Gaussian process-based Bayesian optimization tool for real-time flood modeling with SWMM
Real-time flood model plays a pivotal role in averting urban flood damage, particularly when there is minimal lead time for preparatory measures. However, urban flood modeling in real-time often contends with inherent uncertainties arising from input data uncertainty and parameter ambiguities. Here this study introduces a real-time calibration (RTC) tool called Bayes_Opt-SWMM, specifically tailored for real-time urban flood modeling and uncertainty optimization. This tool leverages the Gaussian process-based Bayesian optimization algorithm and interfaces seamlessly with the Stormwater Management Model (SWMM). It integrates real-time model forcing data and flood monitoring collected through sensors and gauges which are strategically placed within critical locations of urban drainage systems. Our approach hinges on the Surrogate Model based Uncertainty Optimization (SMUO) concept, providing an avenue for enhancing real-time flood modeling. Bayes_Opt-SWMM runs the optimization process using a surrogate model called Gaussian Process emulator with two inference methods: (1) the Gaussian Process (GP) model and (2) Markov Chain Monte Carlo (MCMC) algorithm in GP model (GP_MCMC). Furthermore, three acquisition functions, namely Expected Improvement (EI), Maximum Probability of Improvement (MPI), and Lower Confidence Bound (LCB), facilitate optimal parameter fitting within the surrogate models. The efficiency of GP-based surrogate models in learning SWMM model parameters, leads to an improved uncertainty quantification and accelerated real-time flood modeling in urban areas. Overall, Bayes_Opt-SWMM emerges as a cost-effective and valuable tool for real-time flood modeling and monitoring, with significant potential for managing intelligent storm water systems in urban environments.
54 ENVIRONMENTAL SCIENCES↗
SU-E-T-341: DVH-Based Comparison of True 3D Measurements to a Delta4 System
Purpose: Delta4 dosimetric software can be used to calculate DVH-based metrics for patient-specific quality assurance from measurements made by a Delta4 QA device. This study investigates the effectiveness of a novel transform method that transposes measurements made with a full-density 3D dosimeter onto patient anatomy, enabling the calculation of DVHs. This allows for DVH comparisons from the transformed dose distribution, which are based on true 3D measurements, to those from the Delta4 system, which are based on semi-3D measurements and interpolation. Methods: A double-arc VMAT treatment for a head-and-neck case was delivered to a 1kg PRESAGE 3D dosimeter inserted into a polyurethane head phantom. The dosimeter was readout using an in-house optical-CT scanner to gather full-density 3D dosimetric data. The transform method is achieved by multiplication of the measured doses with a “transformation matrix” which accounts for heterogeneities and differences in geometry between the patient and the phantom. The transformation matrix is a voxel-by-voxel division of the patient planned dose by the phantom planned dose, both calculated in the treatment planning system (Eclipse). The transformed distribution was then overlaid on the patient CT data, enabling the calculation of DVHs. The same VMAT treatment was delivered to the Delta4 phantom and DVH data was calculated using its associated software. Results: The transformed dose distribution showed good agreement with calculated patient values, determined by similarity in dose profiles between the two distributions and a 3D gamma index passing rate of 94.87% for 3%/3mm criteria. For every structure contained within the dosimeter volume, the transformed DVHs demonstrated better agreement than the Delta4 DVHs, when compared to the values calculated in the treatment planning system. Conclusion: The coupled technique of full-density 3D dose measurements and the presented transform method enables clinical patient-specific quality assurance data that is more accurate than the semi-3D Delta4 system. This work was supported by NIH R01CA100835.
60 APPLIED LIFE SCIENCES↗
TU-A-304-03: Quality Assurance, Safety, and Other Practical Aspects of SBRT
Increased use of SBRT and hypo fractionation in radiation oncology practice has posted a number of challenges to medical physicist, ranging from planning, image-guided patient setup and on-treatment monitoring, to quality assurance (QA) and dose delivery. This symposium is designed to provide updated knowledge necessary for the safe and efficient implementation of SBRT in various linac platforms, including the emerging digital linacs equipped with high dose rate FFF beams. Issues related to 4D CT, PET and MRI simulations, 3D/4D CBCT guided patient setup, real-time image guidance during SBRT dose delivery using gated/un-gated VMAT or IMRT, and technical advancements in QA of SBRT (in particular, strategies dealing with high dose rate FFF beams) will be addressed. The symposium will help the attendees to gain a comprehensive understanding of the SBRT workflow and facilitate their clinical implementation of the state-of-art imaging and planning techniques. Learning Objectives: Present background knowledge of SBRT, describe essential requirements for safe implementation of SBRT, and discuss issues specific to SBRT treatment planning and QA. Update on the use of multi-dimensional (3D and 4D) and multi-modality (CT, beam-level X-ray imaging, pre- and on-treatment 3D/4D MRI, PET, robotic ultrasound, etc.) for reliable guidance of SBRT. Provide a comprehensive overview of emerging digital linacs and summarize the key geometric and dosimetric features of the new generation of linacs for substantially improved SBRT. Discuss treatment planning and quality assurance issues specific to SBRT. Research grant from Varian Medical Systems.
60 APPLIED LIFE SCIENCES↗
SU-F-T-489: 4-Years Experience of QA in TomoTherapy MVCT: What Do We Look Out For?
Purpose: To evaluate the QA results of TomoTherapy MVCT from March 2012 to February 2016, and to identify issues that may affect consistency in HU numbers and reconstructed treatment dose in MVCT. Methods: Monthly QA was performed on our TomoHD system. Phantom with rod inserts of various mass densities was imaged in MVCT and compared to baseline to evaluate HU number consistency. To evaluate treatment dose reconstructed by delivered sinogram and MVCT, a treatment plan was designed on a humanoid skull phantom. The phantom was imaged with MVCT and treatment plan was delivered to obtain the sinogram. The dose reconstructed with the Planned Adaptive software was compared to the dose in the original plan. The QA tolerance for HU numbers was ±30 HU, and ±2% for discrepancy between original plan dose and reconstructed dose. Tolerances were referenced to AAPM TG148. Results: Several technical modifications or maintenance activities to the system have been identified which affected QA Results: 1) Upgrade in console system software which added a weekly HU calibration procedure; 2) Linac or MLC replacement leading to change in Accelerator Output Machine (AOM) parameters; 3) Upgrade in planning system algorithm affecting MVCT dose reconstruction. These events caused abrupt changes in QA results especially for the reconstructed dose. In the past 9 months, when no such modifications were done to the system, reconstructed dose was consistent with maximum deviation from baseline less than 0.6%. The HU number deviated less than 5HU. Conclusion: Routine QA is essential for MVCT, especially if the MVCT is used for daily dose reconstruction to monitor delivered dose to patients. Several technical events which may affect consistency of this are software changes, linac or MLC replacement. QA results reflected changes which justify re-calibration or system adjustment. In normal circumstances, the system should be relatively stable and quarterly QA may be sufficient.
60 APPLIED LIFE SCIENCES↗
MO-D-BRB-01: Fundamental Aspects of SBRT
Increased use of SBRT and hypofractionation in radiation oncology practice has posted a number of challenges to medical physicist, ranging from planning, image-guided patient setup and on-treatment monitoring, to quality assurance (QA) and dose delivery. This symposium is designed to provide current knowledge necessary for the safe and efficient implementation of SBRT in various linac platforms, including the emerging digital linacs equipped with high dose rate FFF beams. Issues related to 4D CT, PET and MRI simulations, 3D/4D CBCT guided patient setup, real-time image guidance during SBRT dose delivery using gated/un-gated VMAT/IMRT, and technical advancements in QA of SBRT (in particular, strategies dealing with high dose rate FFF beams) will be addressed. The symposium will help the attendees to gain a comprehensive understanding of the SBRT workflow and facilitate their clinical implementation of the state-of-art imaging and planning techniques. Learning Objectives: Present background knowledge of SBRT, describe essential requirements for safe implementation of SBRT, and discuss issues specific to SBRT treatment planning and QA. Update on the use of multi-dimensional and multi-modality imaging for reliable guidance of SBRT. Discuss treatment planning and QA issues specific to SBRT. Provide a comprehensive overview of emerging digital linacs and summarize the key geometric and dosimetric features of the new generation of linacs for substantially improved SBRT. NIH/NCI; Varian Medical Systems; F. Yin, Duke University has a research agreement with Varian Medical Systems. In addition to research grant, I had a technology license agreement with Varian Medical Systems.
60 APPLIED LIFE SCIENCES↗
MO-D-BRB-03: Quality Assurance of SBRT
Increased use of SBRT and hypofractionation in radiation oncology practice has posted a number of challenges to medical physicist, ranging from planning, image-guided patient setup and on-treatment monitoring, to quality assurance (QA) and dose delivery. This symposium is designed to provide current knowledge necessary for the safe and efficient implementation of SBRT in various linac platforms, including the emerging digital linacs equipped with high dose rate FFF beams. Issues related to 4D CT, PET and MRI simulations, 3D/4D CBCT guided patient setup, real-time image guidance during SBRT dose delivery using gated/un-gated VMAT/IMRT, and technical advancements in QA of SBRT (in particular, strategies dealing with high dose rate FFF beams) will be addressed. The symposium will help the attendees to gain a comprehensive understanding of the SBRT workflow and facilitate their clinical implementation of the state-of-art imaging and planning techniques. Learning Objectives: Present background knowledge of SBRT, describe essential requirements for safe implementation of SBRT, and discuss issues specific to SBRT treatment planning and QA. Update on the use of multi-dimensional and multi-modality imaging for reliable guidance of SBRT. Discuss treatment planning and QA issues specific to SBRT. Provide a comprehensive overview of emerging digital linacs and summarize the key geometric and dosimetric features of the new generation of linacs for substantially improved SBRT. NIH/NCI; Varian Medical Systems; F. Yin, Duke University has a research agreement with Varian Medical Systems. In addition to research grant, I had a technology license agreement with Varian Medical Systems.
60 APPLIED LIFE SCIENCES↗
Towards Auto-Generated Data Systems
After decades of progress, database management systems (DBMSs) are now the backbones of many data applications that we interact with on a daily basis. Yet, with the emergence of new data types and hardware, building and optimizing new data systems remain as difficult as the heyday of relational databases. In this paper, we summarize our work towards automating the building and optimization of data systems. Drawing from our own experience, we further argue that any automation technique must address three aspects: user specification, code generation, and result validation. We conclude by discussing a case study using videos data processing, along with opportunities for future research towards designing data systems that are automatically generated.
Computer Science↗
Jaynesian Analysis of Environmental Chemistry: Systems Model Component Integration via the Arctic Aquatic Carbon Cycle
Focal Areas: All three are touched upon from the OBER call. We will consider formal logical inference and entropic information analysis for sparse but intensive chemical measurements, as optimal drivers for managing process complexity. As a centerpiece for the discussion we take soil-to-sea organic structural evolution within the Arctic hydro-geochemosphere, assessing detrital negentropy then algorithmic greed to generate ranked, reduced mechanisms for system integration.
54 ENVIRONMENTAL SCIENCES↗
Preferential flow in subsurface hydrology: From a century of denial to a decade of addressing it via ML?
This white paper highlights the potential of using machine learning (ML) to gain new insights from large, high-frequency Earth science observatory network datasets (focal area 3) and better represent complex subsurface processes via ML in Earth System Models (ESMs, focal area 2).
54 ENVIRONMENTAL SCIENCES↗
NETL CO2U openLCA LCI Database Version 2.1
The NETL CO2U openLCA LCI Database Version 2 is part of the NETL CO2U LCA Guidance Toolkit for Carbon Utilization funding recipients to meet their LCA requirements. The toolkit includes the following files: NETL CO2U LCA Guidance Document, NETL CO2U openLCA LCI Database, NETL CO2U openLCA Results Contribution Tool, NETL CO2U LCA Documentation Spreadsheet, and NETL CO2U LCA Report Template. The NETL CO2U openLCA LCI Database is an openLCA software files that contains data and an example system for funding recipients using openLCA to complete their LCA requirements.
54 ENVIRONMENTAL SCIENCES↗
Developing Mango Graph Studio and its Applications for Bioinformatics and Systems Biology (SBIR Phase I Grant Final Technical Report)
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59 BASIC BIOLOGICAL SCIENCES↗
Resilient s-ACD for Asynchronous Collaborative Solutions of Systems of Linear Equations
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Mathematics and Computing, Computer science↗
Solving sparse finite element problems on neuromorphic hardware
The finite element method (FEM) is one of the most important and ubiquitous numerical methods for solving partial differential equations (PDEs) on computers for scientific and engineering discovery. Applying the FEM to larger and more detailed scientific models has driven advances in high-performance computing for decades. Here we demonstrate that scalable spiking neuromorphic hardware can directly implement the FEM by constructing a spiking neural network that solves the large, sparse, linear systems of equations at the core of the FEM. We show that for the Poisson equation, a fundamental PDE in science and engineering, our neural circuit achieves meaningful levels of numerical accuracy and close to ideal scaling on modern, inherently parallel and energy-efficient neuromorphic hardware, specifically Intel’s Loihi 2 neuromorphic platform. We illustrate extensions to irregular mesh geometries in both two and three dimensions as well as other PDEs such as linear elasticity. Our spiking neural network is constructed from a recurrent network model of the brain’s motor cortex and, in contrast to black-box deep artificial neural network-based methods for PDEs, directly translates the well-understood and trusted mathematics of the FEM to a natively spiking neuromorphic algorithm.
Applied mathematics↗
Hydrogen Risk Assessment Models (HyRAM) (Version 3.0 Technical Reference Manual)
The HyRAM software toolkit provides a basis for conducting quantitative risk assessment and consequence modeling for hydrogen infrastructure and transportation systems. HyRAM is designed to facilitate the use of state-of-the-art science and engineering models to conduct robust, repeatable assessments of hydrogen safety, hazards, and risk. HyRAM includes generic probabilities for hydrogen equipment failures, probabilistic models for the impact of heat flux on humans and structures, and computationally and experimentally validated first-order models of hydrogen release and flame physics. HyRAM integrates deterministic and probabilistic models for quantifying accident scenarios, predicting physical effects, and characterizing hydrogen hazards (thermal effects from jet fires, overpressure effects from deflagrations), and assessing impact on people and structures. HyRAM is developed at Sandia National Laboratories for the U.S. Department of Energy to increase access to technical data about hydrogen safety and to enable the use of that data to support development and revision of national and international codes and standards. HyRAM is a research software in active development and thus the models and data may change. This report will be updated at appropriate developmental intervals. This document provides a description of the methodology and models contained in the HyRAM version 3.0. HyRAM 3.0 includes the new ability to model cryogenic hydrogen releases from liquid hydrogen systems, using a different property calculation method and different equations of state. Other changes include modifications to the ignition probability calculations, component leak frequency calculations, and addition of default impulse data.
08 HYDROGEN↗
Polynuclear Aromatic Hydrocarbons with Curved Surfaces: Buckyballs
The discovery of a new allotropic form of elemental carbon – the fullerenes – and subsequently other novel forms of elemental carbon with pyramidalized surfaces, most notably single-walled and multi-walled carbon nanotubes, introduced a novel structural motif to the polycyclic aromatic hydrocarbons (PAHs) with nonplanar surfaces. Our research program supported by BES DOE grant DE-FG02-04ER15514 has dealt with the synthesis, structural studies, and chemistry of the novel curved-surface PAHs with carbon frameworks structurally related to fullerenes. They are referred to as “buckybowls”. We prepared several new buckybowls and, even more importantly, developed the efficient, gram-scale synthetic methodologies for the preparation of small buckybowls, most notably corannulene (C20H10) and its derivatives. In addition, the employment of the corannulene-based synthons previously developed in our laboratory led to a number of highly nonplanar molecular architectures with two or more corannulene subunits with a potential for the applications as novel materials in separation sciences, nanoelectronics, photovoltaics and catalysis. In collaboration with Professor Angelici (Iowa State) we prepared and characterized several transition metal complexes of corannulene, providing the first structural characterization of η6 metal complexes of buckybowls by a single crystal X-ray diffraction. In addition to the definitive structural characterization of the complexes we demonstrated that the (η6-C6Me6)Ru2+ unit in some relatively stable complexes activate the corannulene ligand to react with proper nucleophiles suggesting that such complexex may be used in catalysis. (Section C). We have explored the efficiency of the dispersion-based interactions of curved-surface conjugated carbon networks by high-level computational models. We showed that the curvature of such networks does not reduce the van der Waals attractions as compared to the planar systems of similar size. We than concentrated on the design, synthesis and testing of the previously unknown molecular receptors with corannulene pincers which are capable of forming the strong ball-and-socket inclusion complexes with fullerenes in solution and in the solid state. Buckycatcher I (a molecular receptor with two corannulene pincers preorganized on a tetrabensocyclooctatetraene tether) inclusion complexes with fullerenes provided the first experimental evidence for the importance of concave-convex π – π interactions in the supramolecular chemistry of fullerene carbon cages with buckybowls. C60@Buckycatcher I has become the prototypical supramolecular system formed by the relatively weak (on the atom-to-atom bases) and has been extensively used by the computational community to test the quality of the theoretical models. In addition, Buckycatcher I shows an exceptional ability to adopt other guest molecules and several its inclusion complexes and/or solvates have been structurally characterized. These unusual structures show the potential of the buckycatchers to be tested as novel organic materials. “Intelligent design” of molecular receptors with corannulene receptors using computational approach allowing for a priori prediction of their binding potentials led to the preparation of other buckycatchers. Both bi- and tridentate corannulene pincers were tested and two of the bidentate receptors (Buckycatchers II and III) exhibited the outstanding affinity toward fullerenes, significantly exciding Buckycatcher I performance. Careful tailoring of the tethers resulted in the optimization of binding energies of the receptors with guest carbon cages and in the reduction of the entropy/solvation penalties. Practical preparation of dicorannulenopentacene opens a new avenue for the synthesis of a pool of bis-corannulene receptors possessing polar groups on their dibenzobarrelene tether. The polar “anchors” can be used to attach these efficient fullerene receptors to solid supports in order to modify their surfaces with the potential applications in separation sciences, catalysis and photovoltaic materials. additionally, the presence of such groups will improve the solubility of the receptors in polar solvents, expanding the scope of their supramolecular chemistry in solutions. Rigorous studies of thermodynamics of host-guest association of molecular clips and tweezers in organic solvents with C60/C70 inclusion complexes with Buckycatcher I as a model system have provided a full set of thermodynamical data including ΔG, ΔH, and –TΔS, for the formation of the inclusion complexes over a range of temperatures and in several solvents. Both 1H NMR and Isothermal Calorimetry (ITC) titrations provide virtually identical association constants, confirming the reliability of the results. WE have shown that thermodynamics of the host-guest complex formation is more complicated than anticipated and proposed by the existing computational models. These data are of premium importance for the testing of the computational solvation models and for a deeper understanding of the supramolecular interactions in organic solvents.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗