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DOE OSTI2026

Applied genomics for industrially relevant microalgal strain development & optimization: characterizing genotype-phenotype relationships towards scalable environment-enhancing energy systems

Multiple planetary boundaries considered a safe operating space for humanity have been exceeded in recent years, with twice as many boundaries transgressed in 2023 as in 2009. Bioenergy systems are unique in that they can interact with and improve many of the transgressed boundaries directly, including multiple geochemical cycles, water and land use, and climate change. Among bioenergy systems, microalgae-based environment enhancing energy (E 2 -energy) are promising bioenergy systems for drop-in biofuels, valuable materials, chemicals and therapeutics, while making deep emission cuts and remediating wastewater, all without competing for agricultural resources.

09 BIOMASS FUELS↗

NASA NTRS2003

Validation and Error Characterization for the Global Precipitation Measurement

The Global Precipitation Measurement (GPM) is an international effort to increase scientific knowledge on the global water cycle with specific goals of improving the understanding and the predictions of climate, weather, and hydrology. These goals will be achieved through several satellites specifically dedicated to GPM along with the integration of numerous meteorological satellite data streams from international and domestic partners. The GPM effort is led by the National Aeronautics and Space Administration (NASA) of the United States and the National Space Development Agency (NASDA) of Japan. In addition to the spaceborne assets, international and domestic partners will provide ground-based resources for validating the satellite observations and retrievals. This paper describes the validation effort of Global Precipitation Measurement to provide quantitative estimates on the errors of the GPM satellite retrievals. The GPM validation approach will build upon the research experience of the Tropical Rainfall Measuring Mission (TRMM) retrieval comparisons and its validation program. The GPM ground validation program will employ instrumentation, physical infrastructure, and research capabilities at Supersites located in important meteorological regimes of the globe. NASA will provide two Supersites, one in a tropical oceanic and the other in a mid-latitude continental regime. GPM international partners will provide Supersites for other important regimes. Those objectives or regimes not addressed by Supersites will be covered through focused field experiments. This paper describes the specific errors that GPM ground validation will address, quantify, and relate to the GPM satellite physical retrievals. GPM will attempt to identify the source of errors within retrievals including those of instrument calibration, retrieval physical assumptions, and algorithm applicability. With the identification of error sources, improvements will be made to the respective calibration, assumption, or algorithm. The instrumentation and techniques of the Supersites will be discussed. The GPM core satellite, with its dual-frequency radar and conically scanning radiometer, will provide insight into precipitation drop-size distributions and potentially increased measurement capabilities of light rain and snowfall. The ground validation program will include instrumentation and techniques commensurate with these new measurement capabilities.

Bidwell, Steven W.↗

DOE OSTI2026

Spinel high-entropy oxides (FeNiCrMnZnX) 3 O 4 (X = Al, mg) as anode materials for high-performance lithium-ion batteries

To address the high cost, cobalt dependency, and resource constraints typical of conventional high-entropy oxide (HEO) anodes, this study reports the successful synthesis of two Co-free, six-component spinel-type HEOs(FeNiCrMnZnAl) 3 O 4 (HEO-Al) and (FeNiCrMnZnMg) 3 O 4 (HEO-Mg), via a sol-gel method. The distinct effects of Al 3+ and Mg 2+ incorporation on the electrochemical performance and lithium storage kinetics were systematically investigated. XRD, Raman, and TEM characterizations confirm that both materials possess a pure spinel phase, uniform particle size, and homogeneous elemental distribution. Notably, electrochemical evaluations reveal that HEO-Al delivers a superior reversible capacity of 480.7 mAh g −1 after 100 cycles at 0.1 A g −1 , and maintains 354.5 mAh g −1 after 1000 long-term cycles at 1 A g −1 , significantly outperforming HEO-Mg. Kinetic analysis indicates that HEO-Al exhibits lower charge transfer resistance, a higher Li + diffusion coefficient, and a pseudocapacitive contribution of up to 82%. Furthermore, these findings demonstrate that Al substitution effectively optimizes the structural stability and lithium storage kinetics of Co-free HEOs, providing a viable strategy for designing low-cost, highly stable HEO anode systems.

Anode materials↗

DOE OSTI2019

Research applications of primary biodiversity databases in the digital age

Our world is in the midst of unprecedented change-climate shifts and sustained, widespread habitat degradation have led to dramatic declines in biodiversity rivaling historical extinction events. At the same time, new approaches to publishing and integrating previously disconnected data resources promise to help provide the evidence needed for more efficient and effective conservation and management. Stakeholders have invested considerable resources to contribute to online databases of species occurrences. However, estimates suggest that only 10% of biocollections are available in digital form. The biocollections community must therefore continue to promote digitization efforts, which in part requires demonstrating compelling applications of the data. Our overarching goal is therefore to determine trends in use of mobilized species occurrence data since 2010, as online systems have grown and now provide over one billion records. To do this, we characterized 501 papers that use openly accessible biodiversity databases. Our standardized tagging protocol was based on key topics of interest, including: database(s) used, taxa addressed, general uses of data, other data types linked to species occurrence data, and data quality issues addressed. We found that the most common uses of online biodiversity databases have been to estimate species distribution and richness, to outline data compilation and publication, and to assist in developing species checklists or describing new species. Only 69% of papers in our dataset addressed one or more aspects of data quality, which is low considering common errors and biases known to exist in opportunistic datasets. Globally, we find that biodiversity databases are still in the initial stages of data compilation. Novel and integrative applications are restricted to certain taxonomic groups and regions with higher numbers of quality records. Continued data digitization, publication, enhancement, and quality control efforts are necessary to make biodiversity science more efficient and relevant in our fast-changing environment.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Novel candidate genes for lignin structure identified through genome-wide association study of naturally varying Populus trichocarpa

Populus is a promising lignocellulosic feedstock for biofuels and bioproducts. However, the cell wall biopolymer lignin is a major barrier in conversion of biomass to biofuels. To investigate the variability and underlying genetic basis of the complex structure of lignin, a population of 409 three-year-old, naturally varying Populus trichocarpa genotypes were characterized by heteronuclear single quantum coherence (HSQC) nuclear magnetic resonance (NMR). A subsequent genome-wide association study (GWAS) was conducted using approximately 8.3 million single nucleotide polymorphisms (SNPs), which identified 756 genes that were significantly associated (−log 10 ( p -value)>6) with at least one lignin phenotype. Several promising candidate genes were identified, many of which have not previously been reported to be associated with lignin or cell wall biosynthesis. These results provide a resource for gaining insights into the molecular mechanisms of lignin biosynthesis and new targets for future genetic improvement in poplar.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

Contrastive Machine Learning with Gamma Spectroscopy Data Augmentations for Detecting Shielded Radiological Material Transfers

Data analysis techniques can be powerful tools for rapidly analyzing data and extracting information that can be used in a latent space for categorizing observations between classes of data. Machine learning models that exploit learned data relationships can address a variety of nuclear nonproliferation challenges like the detection and tracking of shielded radiological material transfers. The high resource cost of manually labeling radiation spectra is a hindrance to the rapid analysis of data collected from persistent monitoring and to the adoption of supervised machine learning methods that require large volumes of curated training data. Instead, contrastive self-supervised learning on unlabeled spectra can enhance models that are built on limited labeled radiation datasets. This work demonstrates that contrastive machine learning is an effective technique for leveraging unlabeled data in detecting and characterizing nuclear material transfers demonstrated on radiation measurements collected at an Oak Ridge National Laboratory testbed, where sodium iodide detectors measure gamma radiation emitted by material transfers between the High Flux Isotope Reactor and the Radiochemical Engineering Development Center. Label-invariant data augmentations tailored for gamma radiation detection physics are used on unlabeled spectra to contrastively train an encoder, learning a complex, embedded state space with self-supervision. A linear classifier is then trained on a limited set of labeled data to distinguish transfer spectra between byproducts and tracked nuclear material using representations from the contrastively trained encoder. The optimized hyperparameter model achieves a balanced accuracy score of 80.30%. Any given model—that is, a trained encoder and classifier—shows preferential treatment for specific subclasses of transfer types. Regardless of the classifier complexity, a supervised classifier using contrastively trained representations achieves higher accuracy than using spectra when trained and tested on limited labeled data.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2020

Characterizing NWP Model Errors Using Doppler-Lidar Measurements of Recurrent Regional Diurnal Flows: Marine-Air Intrusions into the Columbia-River Basin

Ground-based Doppler-lidar instrumentation provides atmospheric wind data at dramatically improved accuracies and spatial/temporal resolutions. These capabilities have provided new insights into atmospheric flow phenomena, but they also should have a strong role in NWP model improvement. Insight into the nature of model errors can be gained by studying recurrent atmospheric flows, here a regional summertime diurnal sea breeze and subsequent marine-air intrusion into the arid interior of Oregon-Washington, where these winds are an important windenergy resource. These marine intrusions were sampled by three scanning Doppler lidars in the Columbia-River Basin as part of the Second Wind Forecast Improvement Project (WFIP2), using data from summer 2016. Lidar time-height cross sections of wind speed identified eight days when the diurnal-flow cycle, (peak wind speeds at midnight, afternoon minima) was obvious and strong. Eight-day composite time-height cross sections of lidar wind speeds are used to validate those generated by the operational NCEP-HRRR model. HRRR simulated the diurnal wind cycle, but produced errors in the timing of onset and significant errors due to a premature nighttime demise of the intrusion flow, producing low-bias errors of 6 m s-1 . Day-to-day and in the composite, whenever a marine intrusion occurred, HRRR made these same errors. The errors occurred under a range of gradient wind conditions indicating that they resulted from the misrepresentation of physical processes within a limited region around the measurement locations. Because of their generation within a limited geographical area, field-measurement programs can be designed to find and address the sources of these NWP errors.

Banta, Robert M.↗

DOE OSTI2024

Accelerating Computational Materials Discovery with Machine Learning and Cloud High-Performance Computing: from Large-Scale Screening to Experimental Validation

High-throughput computational materials discovery has promised significant acceleration of the design and discovery of new materials for many years. Despite a surge in interest and activity, the constraints imposed by large-scale computational resources present a significant bottleneck. Furthermore, examples of large-scale computational discovery carried through experimental validation remain scarce, especially for materials with product applicability. In this paper, we demonstrate how this vision became reality by first combining state-of-the-art artificial intelligence (AI) models and traditional physics-based models on cloud high performance computing (HPC) resources to quickly navigate through more than 32 million candidates and predict around half a million potentially stable materials. Focusing on solid-state electrolytes for battery applications, our discovery pipeline further identified 18 promising candidates with new compositions and rediscovered a decade’s worth of collective knowledge in the field as a byproduct. By employing around one thousand virtual machines in the cloud, this process took less than 80 hours. We then synthesized and experimentally characterized the structures and conductivities of our top candidates, the Na x Li 3-x YCl 6 (0.5 ≤ x ≤ 2.5) series, demonstrating the potential of these compounds to serve as solid electrolytes. Additional candidate materials are currently under experimental investigation that could offer more examples of the computational discovery of new phases of Li- and Na-conducting solid electrolytes. We believe this unprecedented approach of synergistically integrating AI models and cloud HPC not only accelerates materials discovery but also showcases the potency of AI-guided experimentation in unlocking transformative scientific breakthroughs with real-world applications.

36 MATERIALS SCIENCE↗

DOE OSTI2025

Mesoscale Cellular Convection Detection and Classification Using Convolutional Neural Networks: Insights From Long-Term Observations at ARM Eastern North Atlantic Site

Marine boundary layer clouds are crucial in Earth's climate system. They frequently manifest as closed or open cell mesoscale cellular convection (MCC). MCC clouds are challenging to represent accurately in current climate models, highlighting the need for detailed observational data sets and in-depth analyses. This study utilizes over 8 years of observations from the U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) User Facility Eastern North Atlantic (ENA) site at Graciosa Island, Azores, to investigate these clouds. We first apply a convolutional neural network with a U-Net architecture to classify open and closed cells, marking the first application of such an approach for automatically detecting MCC patterns from ground-based radar measurements. This method addresses some observational gaps in satellite data related to low temporal resolution, nighttime challenges, and limited vertical structure capture. The analysis of the MCC cases shows clear differences between closed and open MCCs: Closed MCC clouds are characterized by lower cloud tops and bases, shallower cloud geometrical depth, weaker horizontal wind speeds, stronger atmospheric stability, and a more homogeneous liquid water path than open MCCs. Finally, we demonstrate two potential applications of our radar-based MCC classifications: (a) facilitating the investigation of aerosol-cloud interactions and (b) exploring meteorological factors along with MCC's evolution by integrating satellite imagery and back-trajectory analysis. The identified MCC cases offer a valuable resource for the scientific community to study MCC processes further and improve climate model accuracy.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2016

Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source

Single particle diffractive imaging data from Rice Dwarf Virus (RDV) were recorded using the Coherent X-ray Imaging (CXI) instrument at the Linac Coherent Light Source (LCLS). RDV was chosen as it is a well-characterized model system, useful for proof-of-principle experiments, system optimization and algorithm development. RDV, an icosahedral virus of about 70 nm in diameter, was aerosolized and injected into the approximately 0.1 μm diameter focused hard X-ray beam at the CXI instrument of LCLS. Diffraction patterns from RDV with signal to 5.9 Ångström were recorded. Here, the diffraction data are available through the Coherent X-ray Imaging Data Bank (CXIDB) as a resource for algorithm development, the contents of which are described here.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2016

A review of whole cell wall NMR by the direct-dissolution of biomass

To fully realize the potential of lignocellulosic biomass as a renewable resource for the production of fuels, chemicals, and materials, an improved understanding of the chemical and molecular structures within biomass and how those structures are formed during biosynthesis and transformed during (thermochemical and biological) conversion must be developed. This effort will require analytical techniques which are not only in-depth, rapid, and cost-effective, but also leave native cell wall features intact. Whole plant cell wall nuclear magnetic resonance (NMR) analysis facilitates unparalleled structural characterization of lignocellulosic biomass without causing (or with minimal) structural modification. The objective of this review is to summarize research pertaining to solution- or gel-state whole plant cell wall NMR analysis of biomass, demonstrating the capability of NMR to delineate the structural features and transformations of biomass. In particular, this review will focus on the application of a two-dimensional solution-state NMR technique and perdeuterated ionic liquid based organic electrolyte solvents for the direct dissolution and analysis of biomass. Furthermore, we believe this type of analysis will be critical to advancing biofuel research, improving bioprocessing methodology, and enhancing plant bioengineering efforts.

09 BIOMASS FUELS↗

DOE OSTI2026

nf-core/proteinfamilies: a scalable pipeline for the generation of protein families

The growth of metagenomics-derived amino acid sequence data has transformed our understanding of protein function, microbial diversity, and evolutionary relationships. However, the vast majority of these proteins remain functionally uncharacterized. Grouping the millions of such uncharacterized sequences with the few experimentally characterized ones allows the transfer of annotations, while the inspection of conserved residues with multiple sequence alignments can provide clues to function, even in the absence of existing functional information. To address the challenges associated with this data surge and the need to group sequences, we present a scalable, open-source, parametrizable Nextflow pipeline (nf-core/proteinfamilies) that generates nascent protein families or assigns new proteins to existing families. The computational benchmarks demonstrated that resource usage scales approximately linearly with input size, and the biological benchmarks showed that the generated protein families closely resemble manually curated families in widely used databases.

Nextflow↗

DOE OSTI2024

Incompatibility as a Resource for Programmable Quantum Instruments

Quantum instruments represent the most general type of quantum measurement, as they incorporate processes with both classical and quantum outputs. In many scenarios, it may be desirable to have some “on-demand” device that is capable of implementing one of many possible instruments whenever the experimenter desires. We refer to such objects as programmable instrument devices (PIDs), and this paper studies PIDs from a resource-theoretic perspective. A physically important class of PIDs are those that do not require quantum memories to implement, and these are naturally “free” in this resource theory. Additionally, these free objects correspond precisely to the class of unsteerable channel assemblages in the study of channel steering. The traditional notion of measurement incompatibility emerges as a resource in this theory since any PID controlling an incompatible family of instruments requires a quantum memory to build. We identify an incompatibility preorder between PIDs based on whether one can be transformed into another using processes that do not require additional quantum memories. Necessary and sufficient conditions are derived for when such transformations are possible based on how well certain guessing games can be played using a given PID. Ultimately our results provide an operational characterization of incompatibility, and they offer semi-device-independent tests for incompatibility in the most general types of quantum instruments. Published by the American Physical Society 2024

Physics↗

DOE OSTI2019

Extreme-Scale Distribution-Based Data Analysis

Scientists overview and identify regions of interest by transforming data into compact information descriptors that characterize simulation results and allow detailed analysis on demand. Among many existing feature descriptors, statistical information derived from data samples is a promising approach to taming the big data avalanche because data distributionscomputed from a population can compactly describe the presence and characteristics of salient data features with minimal data movement. The ability to computationally summarize and process data using distributions also provides an efficient and representative capture of information that can adjust to size and resource constraints, with the added benefit that uncertainty associated with results can be quantified and communicated. In this project, we have developed a distribution-based data analysis and visualization framework for optimizing in situ processing and analysis of extreme-scale scientific data.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2021

The Resilience Planning Landscape for Communities and Electric Utilities

Synapse Energy Economics has conducted structured interviews to better characterize the current landscape of resilience planning within and across jurisdictions. Synapse interviewed representatives of a diverse group of communities and their electric utilities. The resulting case studies span geographies and utility regulatory structures and represent a range of threats. They also vary in terms of population density and size. This report summarizes our approach and the findings gleaned from these conversations. All the communities and utilities we interviewed see increased interest in and commitment of resources for energy-related resilience. The risks and consequences these communities and utilities faced in the past, face now, and will face in the future drove them to improve engagement, advance processes, further decision-making, and in many cases invest in projects. While no process used by communities and utilities was the same, the different processes used by communities and utilities allowed each one to make progress in its own way. Several approaches are emerging that can provide good models for other communities and utilities with an interest in improving resilience.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

DOE OSTI2019

Regional Shelter Analysis – External Gamma Radiation Exposure Methodology

During normal operations, buildings can protect their occupants from outdoor hazards, including nuclear fallout and other external gamma radiation hazards. Purposeful sheltering can increase this protection. The physics of building protection against external gamma radiation is relatively well understood and we can characterize the protection afforded by individual buildings. However, an operationally efficient, regional-scale methodology to account for building protection effects has not previously been available. Such a method is necessary because (a) the overwhelming majority of the US population is indoors at any given time and (b) a regional-level building protection methodology could better estimate populations truly at risk in emergencies, support improved decision-making (shelter vs. evacuation decisions), and help guide resources towards those most at risk. The Regional Shelter Analysis (RSA) methodology provides a comprehensive, yet operationally efficient method for population-based risk analyses. Specifically, it accounts for (a) building protection distributions (within and among different buildings) and (b) population postures (how people are distributed within and outside of buildings). The RSA method could support a common operating picture by providing user specific results that have the resolution appropriate for individual user’s needs while still being consistent with the information being provided to the other users. The method employs existing building and population databases and is compatible with most modern exposure and injury assessment tools. This report presents the RSA methodology and discusses general operational considerations, with a focus on external gamma radiation exposures. To place this work in the context of prior efforts and current initiatives, a focused literature review is provided that identifies the relevant literature, scientific findings, and datasets from a variety of scientific fields. Other reports in this series will discuss (a) the inhalation exposure pathway and (b) specific RSA implementations.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS1984

Geometric error analysis for shuttle imaging spectrometer experiment

The demand of more powerful tools for remote sensing and management of earth resources steadily increased over the last decade. With the recent advancement of area array detectors, high resolution multichannel imaging spectrometers can be realistically constructed. The error analysis study for the Shuttle Imaging Spectrometer Experiment system is documented for the purpose of providing information for design, tradeoff, and performance prediction. Error sources including the Shuttle attitude determination and control system, instrument pointing and misalignment, disturbances, ephemeris, Earth rotation, etc., were investigated. Geometric error mapping functions were developed, characterized, and illustrated extensively with tables and charts. Selected ground patterns and the corresponding image distortions were generated for direct visual inspection of how the various error sources affect the appearance of the ground object images.

Wang, S. J.↗

NASA NTRS2011

The NASA Soil Moisture Active Passive (SMAP) Mission - Algorithm and Cal/Val Activities and Synergies with SMOS and Other L-Band Missions

NASA's Soil Moisture Active Passive (SMAP) mission, planned for launch in late 2014, has as its key measurement objective the frequent, global mapping of near-surface soil moisture and its freeze-thaw state. SMAP soil moisture and freeze/thaw measurements at 10 km and 3 km resolutions respectively, would enable significantly improved estimates of water, energy and carbon transfers between the land and atmosphere. Soil moisture control of these fluxes is a key factor in the performance of atmospheric models used for weather forecasts and climate projections Soil moisture measurements are also of great importance in assessing floods and for monitoring drought. In addition, observations of soil moisture and freeze/thaw timing over the boreal latitudes can help reduce uncertainties in quantifying the global carbon balance. The SMAP measurement concept utilizes an L-band radar and radiometer sharing a rotating 6-meter mesh reflector antenna. The SMAP radiometer and radar flight hardware and ground processing designs are incorporating approaches to identify and mitigate potential terrestrial radio frequency interference (RFI). The radar and radiometer instruments are planned to operate in a 680 km polar orbit, viewing the surface at a constant 40-degree incidence angle with a 1000-km swath width, providing 3-day global coverage. Data from the instruments would yield global maps of soil moisture and freeze/thaw state to be provided at 10 km and 3 km resolutions respectively, every two to three days. Plans are to provide also a radiometer-only soil moisture product at 40-km spatial resolution. This product and the underlying brightness temperatures have characteristics similar to those provided by the Soil Moisture and Ocean Salinity (SMOS) mission. As a result, there are unique opportunities for common data product development and continuity between the two missions. SMAP also has commonalities with other satellite missions having L-band radiometer and/or radar sensors applicable to soil moisture measurement, such as Aquarius, SAO COM, and ALOS-2. The algorithms and data products for SMAP are being developed in the SMAP Science Data System (SDS) Testbed. The algorithms are developed and evaluated in the SDS Testbed using simulated SMAP observations as well as observational data from current airborne and spaceborne L-band sensors including SMOS. The SMAP project is developing a Calibration and Validation (Cal/Val) Plan that is designed to support algorithm development (pre-launch) and data product validation (post-launch). A key component of the Cal/Val Plan is the identification, characterization, and instrumentation of sites that can be used to calibrate and validate the sensor data (Level I) and derived geophysical products (Level 2 and higher). In this presentation we report on the development status of the SMAP data product algorithms, and the planning and implementation of the SMAP Cal/Val program. Several components of the SMAP algorithm development and Cal/Val plans have commonality with those of SMOS, and for this reason there are shared activities and resources that can be utilized between the missions, including in situ networks, ancillary data sets, and long-term monitoring sites.

Njoku, Eni↗