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At least 1,693 records · Page 94

An evolutionarily conserved RNase-based mechanism for repression of transcriptional positive autoregulation

It is known that environmental context influences the degree of regulation at the transcriptional and post-transcriptional levels. However, the principles governing the differential usage and interplay of regulation at these two levels are not clear. Here, we show that the integration of transcriptional and post-transcriptional regulatory mechanisms in a characteristic network motif drives efficient environment-dependent state transitions. Through phenotypic screening, systems analysis, and rigorous experimental validation, we discovered an RNase (VNG2099C) in Halobacterium salinarum that is transcriptionally co-regulated with genes of the aerobic physiologic state but acts on transcripts of the anaerobic state. Through modelling and experimentation we show that this arrangement generates an efficient state-transition switch, within which RNase-repression of a transcriptional positive autoregulation (RPAR) loop is critical for shutting down ATP-consuming active potassium uptake to conserve energy required for salinity adaptation under aerobic, high potassium, or dark conditions. Subsequently, we discovered that many Escherichia coli operons with energy-associated functions are also putatively controlled by RPAR indicating that this network motif may have evolved independently in phylogenetically distant organisms. Thus, our data suggest that interplay of transcriptional and post-transcriptional regulation in the RPAR motif is a generalized principle for efficient environment-dependent state transitions across prokaryotes.

59 BASIC BIOLOGICAL SCIENCES↗

Monte Carlo simulations of {sup 3}He ion physical characteristics in a water phantom and evaluation of radiobiological effectiveness

Purpose: {sup 3}He ions may hold great potential for clinical therapy because of both their physical and biological properties. In this study, the authors investigated the physical properties, i.e., the depth-dose curves from primary and secondary particles, and the energy distributions of helium ({sup 3}He) ions. A relative biological effectiveness (RBE) model was applied to assess the biological effectiveness on survival of multiple cell lines. Methods: In light of the lack of experimental measurements and cross sections, the authors used Monte Carlo methods to study the energy deposition of {sup 3}He ions. The transport of {sup 3}He ions in water was simulated by using three Monte Carlo codes—FLUKA, GEANT4, and MCNPX—for incident beams with Gaussian energy distributions with average energies of 527 and 699 MeV and a full width at half maximum of 3.3 MeV in both cases. The RBE of each was evaluated by using the repair-misrepair-fixation model. In all of the simulations with each of the three Monte Carlo codes, the same geometry and primary beam parameters were used. Results: Energy deposition as a function of depth and energy spectra with high resolution was calculated on the central axis of the beam. Secondary proton dose from the primary {sup 3}He beams was predicted quite differently by the three Monte Carlo systems. The predictions differed by as much as a factor of 2. Microdosimetric parameters such as dose mean lineal energy (y{sub D}), frequency mean lineal energy (y{sub F}), and frequency mean specific energy (z{sub F}) were used to characterize the radiation beam quality at four depths of the Bragg curve. Calculated RBE values were close to 1 at the entrance, reached on average 1.8 and 1.6 for prostate and head and neck cancer cell lines at the Bragg peak for both energies, but showed some variations between the different Monte Carlo codes. Conclusions: Although the Monte Carlo codes provided different results in energy deposition and especially in secondary particle production (most of the differences between the three codes were observed close to the Bragg peak, where the energy spectrum broadens), the results in terms of RBE were generally similar.

61 RADIATION PROTECTION AND DOSIMETRY↗

The Skyrme-TQRPA calculations of electron capture on hot nuclei in pre-supernova environment

We combine the thermal QRPA approach with the Skyrme energy density functional theory (Skyrme–TQRPA) for modelling the process of electron capture on nuclei in supernova environment. For a sample nucleus, {sup 56}Fe, the Skyrme–TQRPA approach is applied to analyze thermal effects on the strength function of GT{sub +} transitions which dominate electron capture at E{sub e} ≤ 30 MeV. Several Skyrme interactions are used in order to verify the sensitivity of the obtained results to the Skyrme force parameters. Finite-temperature cross sections are calculated and the results are comparedwith those of the other model calculations.

74 ATOMIC AND MOLECULAR PHYSICS↗

Vibrational distribution of nitrogen molecules in the C{sup 3}{Pi}{sub u} state in a near-surface microwave plasma in nitrogen at pressures of 1-5 Torr

The radiation of the second positive nitrogen system has been used to study the spatial dependence of the vibrational distribution of nitrogen molecules in the C{sup 3}{Pi}{sub u} state in the near-surface plasma layer of an electrode microwave discharge in nitrogen at pressures of 1-5 Torr. It has been shown that the vibrational distribution changes at a scale of 100 {mu}m. It has been concluded that this state is populated owing to the electron impact from the ground state. The possibility of using the local approximation for the electron energy distribution function to explain the experimental results has been analyzed.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Langmuir probe study of an inductively coupled magnetic-pole-enhanced helium plasma

This study reports the effects of RF power and filling gas pressure variation on the plasma parameters, including the electron number density n{sub e}, electron temperature T{sub e}, plasma potential V{sub p}, skin depth δ, and electron energy probability functions (EEPFs) in a low-pressure inductively coupled helium plasma source with magnetic pole enhancement. An RF compensated Langmuir probe is used to measure these plasma parameters. It is observed that the electron number density increases with both the RF power and the filling gas pressure. Conversely, the electron temperature decreases with increasing RF power and gas pressure. It is also noted that, at low RF powers and gas pressures, the EEPFs are non-Maxwellian, while at RF powers of ≥50 W, they evolve into a Maxwellian distribution. The dependences of the skin depth and plasma potential on the RF power are also studied and show a decreasing trend.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Skyrme-Hartree-Fock-Bogoliubov mass models on a 3D mesh: III. From atomic nuclei to neutron stars

Here, we present BSkG3, the latest entry in the Brussels-Skyrme-on-a-grid series of large-scale models of nuclear structure based on an energy density functional. Compared to its predecessors, the new model offers a more realistic description of nucleonic matter at the extreme densities relevant to neutron stars. This achievement is made possible by incorporating a constraint on the infinite nuclear matter properties at high densities in the parameter adjustment, ensuring in this way that the predictions of BSkG3 for the nuclear Equation of State are compatible with the observational evidence for heavy pulsars with M > 2M ⊙ . Instead of the usual phenomenological pairing terms, we also employ a more microscopically founded treatment of nucleon pairing, resulting in extrapolations to high densities that are in line with the predictions of advanced many-body methods and are hence more suited to the study of superfluidity in neutron stars. By adopting an extended form of the Skyrme functional, we are able to reconcile the description of matter at high densities and at saturation density: the new model further refines the description of atomic nuclei offered by its predecessors. A qualitative improvement is our inclusion of ground state reflection asymmetry, in addition to the spontaneous breaking of rotational, axial, and time-reversal symmetry. Quantitatively, the model offers lowered root-mean-square deviations on 2457 masses (0.631 MeV), 810 charge radii (0.0237 fm) and an unmatched accuracy with respect to 45 primary fission barriers of actinide nuclei (0.33 MeV). Reconciling the complexity of neutron stars with those of atomic nuclei establishes BSkG3 as a tool of choice for applications to nuclear structure, the nuclear equation of state and nuclear astrophysics in general.

Physics↗

Comparative Critical Mass Calculations for NNL and ENDF/B-VIII.0 Zirconium Hydride Thermal Neutron Scattering Laws

Zirconium hydride (ZrH x ) is a moderator material for TRIGA reactors and historical space reactor systems, such as SNAP-10A. Thermal neutron scattering laws (TSL) for two phases of this material, δ and ε, have been previously evaluated by Naval Nuclear Laboratory (NNL) and submitted to the National Nuclear Data Center (NNDC) for inclusion in the US national ENDF/B-VIII.1 nuclear data library. In contrast to the current ENDF/B-VIII.0 TSL evaluations, which consider only a single phase, the new evaluations are derived from separate ab initio calculations for both phases and include coherent elastic effects of the zirconium sublattice. To estimate the impact of these changes to the TSL evaluation of this material, comparative critical mass calculations were performed with MC21 for homogenous mixtures of high- enriched uranium (HEU) and ZrH x in bare and water reflected sphere configurations. These calculations yield an impact on the estimated critical mass as a function of 235 U loading density with maximum differences as large as 1% - 5% for over-moderated thermal spectrum systems. Consequently, the NNL TSL evaluations are anticipated to have a small impact on criticality calculations of thermal reactor systems regardless of the material phase. Nevertheless, characteristic differences exist in the predicted thermal spectra as function of energy for the two sets of TSL evaluations, which are attributed to difference in the underlying phonon density of states of hydrogen bound in ZrH x .

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Ultrahigh energy resolution focusing monochromator for inelastic x-ray scattering spectrometer

A further development of a focusing monochromator concept for X-ray energy resolution of 0.1 meV and below is presented. Theoretical analysis of several optical layouts based on this concept was supported by numerical simulations performed in the “Synchrotron Radiation Workshop” software package using the physical-optics approach and careful modeling of partially-coherent synchrotron (undulator) radiation. Along with the energy resolution, the spectral shape of the energy resolution function was investigated. It was shown that under certain conditions the decay of the resolution function tails can be faster than that of the Gaussian function.

36 MATERIALS SCIENCE↗

Monolayer-enriched production of Au-decorated WS 2 Nanosheets via Defect Engineering

Layered transition metal dichalcogenides (TMDs) represent a diverse, emerging source of two-dimensional (2D) nanostructures with broad application in optoelectronics and energy. Chemical functionalization has evolved into a powerful tool to tailor properties of these 2D TMDs; however, functionalization strategies have been largely limited to the metallic 1T-polytype. The work herein illustrates that 2H-semiconducting liquid-exfoliated tungsten disulfide (WS 2 ) undergoes a spontaneous redox reaction with gold (III) chloride (AuCl 3 ). Au nanoparticles (NPs) predominantly nucleate at nanosheet edges with tuneable NP size and density. AuCl 3 is preferentially reduced on multi-layer WS 2 and resulting large Au aggregates are easily separated from the colloidal dispersion by simple centrifugation. This process may be exploited to enrich the dispersions in laterally large, monolayer nanosheets. It is proposed that thiol groups at edges and defects sides reduce the AuCl 3 to Au 0 and are in turn oxidized to disulfides. Optical emission, i.e. photoluminescence, of the monolayers remained pristine, while the electrocatalytic activity towards the hydrogen evolution reaction is significantly improved. Taken together, these improvements in functionalization, fabrication, and catalytic activity represent an important advance in the study of these emerging 2D nanostructures.

36 MATERIALS SCIENCE↗

Measurement of transverse energy-energy correlations in multi-jet events in p p collisions at s = 7 TeV using the ATLAS detector and determination of the strong coupling constant α s ( m Z )

CERN-LHC. High transverse momentum jets produced in pp collisions at a centre of mass energy of 7 TeV are used to measure the transverse energy-energy correlation function and its associated azimuthal asymmetry. The data were recorded with the ATLAS detector at the LHC in the year 2011 and correspond to an integrated luminosity of 158 /pb. The selection criteria demand the average transverse momentum of the two leading anti-kT r=0.4 jets in an event to be larger than 250 GeV.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Annual Report FY2013-- A Kinematically Complete, Interdisciplinary, and Co-Institutional Measurement of the 19F(α,n) Cross-section for Nuclear Safeguards Science

The goal of this proposal is to enable neutron detection for precision Non-Destructive Assays (NDAs) of actinide-fluoride samples. Neutrons are continuously generated from a UFx matrix in a container or sample as a result of the interaction of alpha particles from uranium-decay α particles with fluorine nuclei in the matrix. Neutrons from 19F(α,n)22Na were once considered a poorly characterized background for assays of UFx samples via 238U spontaneous fission neutron detection [SMI2010B]. However, the yield of decay-α-driven neutrons is critical for 234,235U LEU and HEU assays, as it can used to determine both the total amount of uranium and the enrichment [BER2010]. This approach can be extremely valuable in a variety of safeguard applications, such as cylinder monitoring in underground uranium storage facilities, nuclear criticality safety studies, nuclear materials accounting, and other nonproliferation applications. The success of neutron-based assays critically depends on an accurate knowledge of the cross section of the (α,n) reaction that generates the neutrons. The 40% uncertainty in the 19F(α,n)22Na cross section currently limits the precision of such assays, and has been identified as a key factor in preventing accurate enrichment determinations [CRO2003]. The need for higher quality cross section data for (α,n) reactions has been a recurring conclusion in reviews of the nuclear data needs to support safeguards. The overarching goal of this project is to enable neutron detection to be used for precision Non- Destructive Assays (NDAs) of actinide-fluoride samples. This will significantly advance safeguards verification at existing declared facilities, nuclear materials accounting, process control, nuclear criticality safety monitoring, and a variety of other nonproliferation applications. To reach this goal, Idaho National Laboratory (INL), in partnership with Oak Ridge National Laboratory (ORNL), Rutgers University (RU), and the University of Notre Dame (UND), will focus on three specific items: (1) making a precision (better than 10 %) determination of the absolute cross section of the 19F(α,n)22Na reaction as a function of energy; (2) determining the spectrum of neutrons and γ-rays emitted from 19F(α,n)22Na over an energy range pertinent to NDA; and (3) performing simulations with this new cross section to extract the neutron yield (neutrons/gram/second) and resulting neutron- and gamma ray-spectra when α particles interact with fluorine nuclei in actinide samples, to aid in the design and reduce uncertainty of future NDA measurements and simulations.

VANDLE, HPGe gamma-ray detector, liquid neutron de↗

Measurement of the Antineutrino Double-Differential Charged-Current Quasi-Elastic Scattering Cross Section at MINERvA

Next-generation neutrino oscillation experiments, such as DUNE and Hyper-Kamiokande, hope to measure charge-parity (CP) violation in the lepton sector. In order to do this, they must dramatically reduce their current levels of uncertainty, particularly those due to neutrino-nucleus interaction models. As CP violation is a measure of the difference between the oscillation properties of neutrinos and antineutrinos, data about how the less-studied antineutrinos interact is especially valuable. We present the MINERvA experiment's first double-differential scattering cross sections for antineutrinos on scintillator, in the few-GeV range relevant to experiments such as DUNE and NOvA. We also present total antineutrino-scintillator quasi-elastic cross sections as a function of energy, which we compare to measurements from previous experiments. As well as being useful to help reduce oscillation experiments' uncertainty, our data can also be used to study the prevalence of various cor relation and final-state interaction effects within the nucleus. We compare to models produced by different model generators, and are able to draw first conclusions about the predictions of these models.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Report on proposed improvements to FRAM uncertainty

This report discusses uncertainty metrics pertaining to the FRAM (Fixed Energy, Response Function Analysis with Multiple Efficiencies) model with respect to several actinide nuclei, especially 241Am.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Cyber-intrusion Auto-response and Policy Management System (CAPMS)

The Cyber-intrusion Auto-response and Policy Management System (CAPMS) project was funded by a grant from the US Department of Energy (DOE) Cybersecurity for Energy Delivery Systems (CEDS) program with contributions from two partner electric utilities: Southern California Edison (SCE) and Duke Energy. The goal of the project was to demonstrate protecting smart grid assets from a cyber attack in a way that “does not impede critical energy delivery functions.” This report summarizes project goals and activities for the CAPMS project and explores what did and did not work as expected. It concludes with an assessment of possible benefits and value of the system for the future.

97 MATHEMATICS AND COMPUTING↗

Fundamental Scaling of Microplasmas and Tunable UV Light Generation.

The temporal evolution of spectral lines from microplasma devices (MD) was studied, including impurity transitions. Long-wavelength emission diminishes more rapidly than deep UV with decreasing pulse width and RF operation. Thus, switching from DC to short pulsed or RF operation, UV emissions can be suppressed, allowing for real-time tuning of the ionization energy of a microplasma photo-ionization source, which is useful for chemical and atomic physics. Scaling allows MD to operate near atmospheric pressure where excimer states are efficiently created and emit down to 65 nm; laser emissions fall off below 200 nm, making MD light sources attractive for deep UV use. A first fully-kinetic three-dimensional model was developed that explicitly calculates electron-energy distribution function. This, and non-continuum effects, were studied with the model and how they are impacted by geometry and transient or DC operation. Finally, a global non-dimensional model was developed to help explain general trends MD physics.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Polynomial Similarity Transformation Theory: A smooth interpolation between coupled cluster doubles and projected BCS applied to the reduced BCS Hamiltonian

We present a similarity transformation theory based on a polynomial form of a particle-hole pair excitation operator. In the weakly correlated limit, this polynomial becomes an exponential, leading to coupled cluster doubles. In the opposite strongly correlated limit, the polynomial becomes an extended Bessel expansion and yields the projected BCS wavefunction. In between, we interpolate using a single parameter. The e ective Hamiltonian is non-hermitian and this Polynomial Similarity Transformation Theory follows the philosophy of traditional coupled cluster, left projecting the transformed Hamiltonian onto subspaces of the Hilbert space in which the wave function variance is forced to be zero. Similarly, the interpolation parameter is obtained through minimizing the next residual in the projective hierarchy. We rationalize and demonstrate how and why coupled cluster doubles is ill suited to the strongly correlated limit whereas the Bessel expansion remains well behaved. The model provides accurate wave functions with energy errors that in its best variant are smaller than 1% across all interaction stengths. The numerical cost is polynomial in system size and the theory can be straightforwardly applied to any realistic Hamiltonian.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The Industry Energy Tool (IET): Documentation

Studies of industrial energy use typically mention the sector's heterogeneity and complexity as modelling barriers. One of the more significant impediments to analyzing and building models of U.S. industrial energy use is the lack of current, disaggregated data. The Industry Energy Tool (IET) and its foundational data addresses some of these barriers. The IET uses county-level energy data with stock turnover, energy efficiency, fuel switching, and emissions functionalities to calculate energy use and emissions from agriculture, construction, mining, and manufacturing industries from 2014 to 2050. The IET is an open-source, transparent, and flexible tool for exploring industrial sector energy and emissions scenarios. The IET takes a simplified approach to developing scenario projections of energy and emissions by allowing users to modify pre-populated inputs for achieved energy efficiency, rate of equipment stock turnover, and future penetration renewable electricity. In addition to its transparency and flexibility, the strengths of the IET lie in its geographically- and operationally-disaggregated data set. The IET's foundational data is built on energy data first calculated at the facility- and technology-level for many of the largest energy-using industries. These data are then aggregated to the county and end-use level with other publicly-available data for use in scenarios estimated by the IET.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Preliminary 235 U(n,f)/ 6 Li(n,t)a Cross Section Ratio Data & Update on the 239 Pu(n,f)/ 235 U(n,f) Cross Section Ratio (FissionTPC FY2019 Report)

The primary motivation for the fissionTPC experiment is to provide precise, accurate data for evaluation of the 239 Pu(n,f) cross section. Neutron induced fission cross sections are typically measured as ratios, with a well known standard cross section being in the denominator. Measuring a ratio removes the need to quantify the neutron beam flux which is difficult to determine accurately. Any cross section ratio measurement is ultimately limited by the accuracy of the standard used. While the 235 U(n,f) standard is well measured some light particle reactions are known as well or better. Light particle reactions also remove some of the shared systematic uncertainties that are present in an actinide-only ratio measurement. To this end the NIFFTE collaboration originally proposed to measure the 239 Pu(n,f)/ 1 H(n,el) cross section ratio. The 1 H(n,el) reaction is well measured, smoothly varying as a function of energy and has good theoretical support, making it an ideal candidate for a cross section standard. Through simulation-based study and initial data collection with the fissionTPC of a 235 U(n,f)/ 1 H(n,el) cross section ratio it was determined that the measurement uncertainties could not be reduced sufficently to take full advantage of the high accuracy of the 1 H(n,el) reaction. The primary difficulties faced were the low energy of the scattered protons which do not provide enough signal to measure the neutron time-of-flight (nToF) with the fissionTPC fast cathode amplifier, and the the background (n,p) signals induced by the high energy component of the WNR beam. It should be noted that these challenges would be greatly reduced if we were to make such a measurement at a monoenergetic neutron facility. In light of these challenges other reactions were investigated. The 6 Li(n,t)a reaction was identified as a good alternative. The 4.8 MeV Q-value of the reaction provides a relatively large signal for nToF determination and the two charged particles (t & a) released in the reaction provide a signal well suited for background suppression in the fissionTPC. The 6 Li(n,t) reaction is considered a standard up to 1 MeV and is currently evaluated up to 3 MeV incident neutron energy. While this is a narrower energy range than the 1 H(n,el) reaction it overlaps well with the fission neutron spectrum. A mock evaluation was performed and it was estimated that a measurement of 239 Pu(n,f)/ 6 Li(n,t) would have an impact on the 239 Pu(n,f) evaluation comparable to a measurement using a the 1 H(n,el) reaction. While the 6 Li(n,t) reaction is not as well measured as the 1 H(n,el) reaction, the lack of previous measurements in the GMA database means that a new measurement of 239 Pu(n,f)/ 6 Li(n,t) will have a greater weighting and therefore a large impact on a future evaluation. In addition to providing a reduction in the 239 Pu(n,f) cross section evaluation uncertainties, a measurement of 6 Li(n,t) in the fissionTPC will provide data to resolve a discrepancy in previous measurements of the reaction above 1 MeV. Furthermore, the 6 Li data collected in the fissionTPC can also be analyzed to measure the 6 Li(n,nd) reaction for which there is limited discrepant data in the GMA database. This report will focus on: the motivation for making a 239 Pu(n,f)/ 6 Li(n,t) cross section ratio measurement; a preliminary look at 235 U(n,f)/ 6 Li(n,t) data collected which will emphasize the capability of the fissionTPC to make an nToF measurement with the fast cathode amplifier; and finally will provide a brief update on the 239 Pu(n,f)/ 235 U(n,f) cross section analysis.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗