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At least 1,693 records · Page 94

Role of gamma carboxylated Glu47 in connexin 26 hemichannel regulation by extracellular Ca{sup 2+}: Insight from a local quantum chemistry study

Graphical abstract: - Highlights: • QM calculations show that Ca{sup 2+} binds to γGlu47 in connexin hemichannels. • Molecular models of increasing size are employed in hybrid DFT calculations. • Ca{sup 2+} binding affects the interaction between γGlu47 and Arg75, Arg184. • Ca{sup 2+} binding alters the structure in a critical region of connexin hemichannels. - Abstract: Connexin hemichannels are regulated by several gating mechanisms, some of which depend critically on the extracellular Ca{sup 2+} concentration ([Ca{sup 2+}]{sub e}). It is well established that hemichannel activity is inhibited at normal (∼1 mM) [Ca{sup 2+}]{sub e}, whereas lowering [Ca{sup 2+}]{sub e} to micromolar levels fosters hemichannel opening. Atomic force microscopy imaging shows significant and reversible changes of pore diameter at the extracellular mouth of Cx26 hemichannels exposed to different [Ca{sup 2+}]{sub e}, however, the underlying molecular mechanisms are not fully elucidated. Analysis of the crystal structure of connexin 26 (Cx26) gap junction channels, corroborated by molecular dynamics (MD) simulations, suggests that several negatively charged amino acids create a favorable environment for low-affinity Ca{sup 2+} binding within the extracellular vestibule of the Cx26 hemichannel. In particular a highly conserved glutammic acid, found in position 47 in most connexins, is thought to undergo post translational gamma carboxylation (γGlu47), and is thus likely to play an important role in Ca{sup 2+} coordination. γGlu47 may also form salt bridges with two conserved arginines (Arg75 and Arg184 in Cx26), which are considered important in stabilizing the structure of the extracellular region. Using a combination of quantum chemistry methods, we analyzed the interaction between γGlu47, Arg75 and Arg184 in a Cx26 hemichannel model both in the absence and in the presence of Ca{sup 2+}. We show that Ca{sup 2+} imparts significant local structural changes and speculate that these modifications may alter the structure of the extracellular loops in Cx26, and may thus account for the mechanism of hemichannel closure in the presence of mM [Ca{sup 2+}]{sub e}.

60 APPLIED LIFE SCIENCES↗

Pore space partition of metal-organic frameworks for gas storage and separation

Pore space partition (PSP) concept is a synthetic design concept and can also serve as a structure analysis method useful for next-step synthetic planning and execution. PSP provides an integrated chemistry-topology-focused tool to design new materials platforms. While PSP is no less effective for making large-pore materials, the growing importance of small-molecule gas storage and separation for green-energy applications provides impetus for developing small-pore materials for which the PSP strategy is uniquely suited. Currently, the best embodiment of the PSP concept is the partitioned-acs (pacs) platform in which both fine or coarse adjustments to the building blocks have sparked a transformation of a prototype framework into a huge and continuously expanding family of chemically robust materials with controllable pore metrics and functionalities suitable for tailored applications. The pacs compositional diversity results from the platform’s intrinsic multi-module nature, geometric flexibility and tolerance towards individual module variations, and mutual structure-directing effects among various modules, all of which combine to enable the molecular-level uniform co-assemblies of chemical components rarely seen together elsewhere. Here, in this contribution, we present an overview of different pore space engineering methods and how different MOF materials have contributed to important advances in chemical stability, industrial gas storage and gas separation. In particular, we will focus on synthetic assembly of the pacs system, highlighting the differences of pacs materials from other MOF platforms and advantages of pacs materials in enhancing various MOF properties.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Synthesis of carbon supported ordered tetragonal pseudo-ternary Pt 2 M'M'' (M = Fe, Co, Ni) nanoparticles and their activity for oxygen reduction reaction

Alloying Pt with 3d transition metals has attracted much attention due to their reduced Pt content and reports of enhanced electrocatalytic activity for proton exchange membrane fuel cell applications. However, synthesizing ordered nanocrystalline intermetallics in the sub-10 nm range can be challenging. Here, we report on the co-reduction synthesis of ordered ternary Pt-base transition metal intermetallics with particle sizes in the regime of 3–5 nm. Since differences in the activity of PtM (M = Fe, Co, Ni) for oxygen reduction reaction (ORR) have been reported, we explored their combinations: Pt 2 FeCo, Pt 2 FeNi, and Pt 2 CoNi. These ternary intermetallic nanoparticles crystallized in P4/mmm space group upon annealing in a protective KCl matrix. The electrocatalysts were prepared by dispersing these intermetallics onto a carbon support using ethylene glycol and various sonication techniques. A combination of analytical techniques including powder X-ray diffraction, thermogravimetric analysis, electron microscopy and electrochemical methods have been used in this study. The oxygen reduction reaction activity and stability of the catalysts were tested in 0.1 M HClO 4 and 0.1 M H 2 SO 4 using cyclic voltammetry and rotating disk electrode voltammetry. The correlations between the composition, structure, morphology and activity of the intermetallics have been established and are discussed.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Bio-inspired redox mediated electrolyte for high performance flexible supercapacitor applications over broad temperature domain

For practical supercapacitors, recent advances in electrolytes have diminished long-standing problems such chemical stability, low ionic conductivity and limited electrochemical performance. Herewith, we communicate a facile method to produce anhydrous redox-active Bio-inspired electrolytes for flexible supercapacitors with application over a broad temperature range. The glycerol (Gly) gel electrolyte consists of various fractions of potassium hydroxide (KOH) and redox active unit, i.e., ammonium molybdate, (NH 4 ) 2 MoO 4 (abbreviated as Mo), in the anhydrous state. The doped glycerol matrix acts as a framework that provides a stable gel electrolyte, forming hierarchical pathway for ion diffusion. The developed gel network with Gly-KOH-MoX (X = 3, 5, 10, and 15%, w/w) provides an effective route to carry the ions onto the pores of the electrodes. The supercapacitor with Gly-KOH5-Mo10 gel provides a specific capacitance of 328 F g –1 , and the same device achieved an energy density of 45.6 Wh kg –1 at a power density of 497 W kg –1 . In addition, the supercapacitor maintained extraordinary cyclic robustness and wide temperature tolerance. Thus, the low cost and environmentally benign, cyclic durability of Gly-KOH-Mo makes these gel electrolytes a potential candidate for use in various energy storage devices.

25 ENERGY STORAGE↗

Impacts of Initial Ca/P on Amorphous Calcium Phosphate

Amorphous calcium phosphate (ACP) is a metastable phase in the crystallization pathway of calcium phosphates. Understanding its chemical and structural properties could provide critical insights into biomineralization mechanisms. Of particular interest is the impact of the initial Ca/P on the structure of ACP. Further, the influence of Ca/P on the size, precipitate chemistry, and transformation of ACP is crucial to understanding the metastability of amorphous phosphates. In situ pair distribution function (PDF) analysis results 5 min after mixing show that the Ca-P bonding geometry varies from predominantly monodentate, to mixed monodentate and bidentate, to predominantly bidentate as Ca/P increases from 0.2 to 5.0. This relationship is consistent across a pH range of 6-11. Samples with only monodentate Ca-P geometries transform directly to hydroxylapatite, while samples some or all bidentate geometries form brushite. Regardless of the initial ratio, the Ca/P of precipitates is close to 1.0. In situ small-angle X-ray scattering shows particle size increases with increasing Ca/P. This is the first evidence of structural variations in ACP and is directly linked to system chemistry. Finally, synthesis of ACP with monodentate Ca-P geometries is a promising method to control the crystallization pathway to form hydroxylapatite at circumneutral pH without stabilizing ions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Liquid Phase Modeling in Porous Media: Adsorption of Methanol and Ethanol in H-MFI in Condensed Water

Zeolites are used in the chemical and separation industries for their exceptional selectivity, adsorption capacity, regenerability, and stability in gas and liquid phase processing. Here, we developed an explicit solvation method for predicting solvent/condensed phase effects on adsorption free energies in microporous media such as zeolites based on the hybrid quantum mechanical/molecular mechanical free energy perturbation (QM/MM-FEP) technique. Our explicit solvation method for zeolite systems, called eSZS, aims to capture site-specific interactions during the adsorption process at the Brønsted acid sites of H-MFI zeolite while still considering the diverse configuration space of the solvent molecules. This strategy is ideal for chemical reactions or adsorbates that interact with the microporous medium in few distinct adsorbate/transition state configurations, i.e., the harmonic or similar approximations are acceptable for the adsorbate/transition state while such approximations break down for the solvent molecules that require extensive configuration space sampling. In this way, our approach effectively overcomes the limitations of implicit solvation models and classical force field methods for describing solvation effects on chemical reactions within porous materials such as zeolites. Specifically, in this study, we investigated various aspects of our hybrid QM/MM approach, including QM cluster size dependencies in a periodic electrostatically embedded cluster model (PEECM), rules for link atoms at the QM/MM boundary, and functional and basis set considerations for converged and reasonably accurate gas and aqueous phase methanol and ethanol adsorption free energy predictions in H-MFI. For gas phase adsorption of methanol and ethanol in H-MFI at a Brønsted acid site in T12 position, we compute adsorption free energies at 298 K of −0.61 and −0.75 eV, respectively, using a PEECM containing 50 Si and 1 Al atom with ωB97x-D/def2-TZVP level of theory. For solvent effect calculations, we sample the aqueous phase using grand canonical Monte Carlo (GCMC) simulations to (1) obtain a mean field of electrostatic interactions in the reaction system and (2) perform a rigorous free energy perturbation calculation. Similar to the experimentally and computationally observed endergonic solvation effects observed for hydrocarbon adsorption on metal surfaces, we also observe that a condensed aqueous environment destabilizes methanol and ethanol at these acid sites in H-MFI at 298 K. Specifically, the computed solvation free energies of adsorption (ΔΔG solv ) for methanol and ethanol are +0.44 and +0.54 eV, respectively. From this study, it is evident that adsorbates (methanol and ethanol) are competing with water for adsorption space inside the H-MFI zeolite, leading to an endergonic solvation effect. Here, we expect that the endergonic, aqueous solvent effect during adsorption in microporous zeolites is highly tunable by changing the pore size and hydrophobicity of the microporous material as this will affect the water density inside the pore structure.

Adsorption↗

Correlation between Structure, Chemistry, and Dielectric Properties of Iron-Doped Gallium Oxide (Ga 2– x Fe x O 3 )

Iron (Fe) doped gallium oxide (Ga2O3) compounds (Ga2-xFexO3; x=0.0-0.3; referred to GFO) were synthesized by the standard high-temperature solid-state chemical reaction method. X-ray diffraction (XRD) analyses confirmed that the sintered GFO compounds stabilized in monoclinic crystal structure with C2/m space group. Local structure and chemical bonding analyses using X-ray absorption near edge structure (XANES) revealed that the Fe occupies octahedral and tetrahedral sites similar to Ga in parent Ga2O3 lattice without considerable changes in the local symmetry. Morphology of the GFO compounds is characterized by the presence of rod-shaped particle (from around 2.0-3.5 µm) features. The energy dispersive X-ray spectroscopy (EDS) confirmed the chemical stoichiometry of the GFO compounds, where the atomic ratio of the constituted elements is in accordance with the calculated concentration values. The frequency and temperature dependent dielectric properties of the GFO compounds exhibited the traditional dielectric dispersion behavior. Relatively high dielectric constant at lower frequencies is attributed to Maxwell-Wagner type of dielectric relaxation which primarily originated from uncompensated charges at electrode material interface. Based on the results and analyses, the effect of Fe content on the crystal structure, chemical bonding and local structure, and dielectric properties of Ga2-xFexO3 compounds is established.Based on the results and analyses, the effects of Fe content on the crystal structure, chemical bonding and local structure, and dielectric properties of Ga2-xFexO3 compounds are established.

Roy, Swadipta↗

Advanced Newton methods for geodynamical models of Stokes flow with viscoplastic rheologies

Strain localization and resulting plasticity and failure play an important role in the evolution of the lithosphere. These phenomena are commonly modeled by Stokes flows with viscoplastic rheologies. The nonlinearities of these rheologies make the numerical solution of the resulting systems challenging, and iterative methods often converge slowly or not at all. Yet accurate solutions are critical for representing the physics. Moreover, for some rheology laws, aspects of solvability are still unknown. We study a basic but representative viscoplastic rheology law. The law involves a yield stress that is independent of the dynamic pressure, referred to as von Mises yield criterion. Two commonly used variants, perfect/ideal and composite viscoplasticity, are compared. We derive both variants from energy minimization principles, and we use this perspective to argue when solutions are unique. We propose a new stress-velocity Newton solution algorithm that treats the stress as an independent variable during the Newton linearization but requires solution only of Stokes systems that are of the usual velocity-pressure form. To study different solution algorithms, we implement 2-D and 3-D finite element discretizations, and we generate Stokes problems with up to 7 orders of magnitude viscosity contrasts, in which compression or tension results in significant nonlinear localization effects. Comparing the performance of the proposed Newton method with the standard Newton method and the Picard fixed-point method, we observe a significant reduction in the number of iterations and improved stability with respect to problem nonlinearity, mesh refinement, and the polynomial order of the discretization.

Rudi, Johann↗

Design of refractory multi-principal-element alloys for high-temperature applications

Abstract Refractory multi-principal-element alloys (RMPEAs) exhibit high specific strength at elevated temperatures ( T ). However, current RMPEAs lack a balance of room-temperature (RT) ductility, high- T strength, and high- T creep resistance. Using density-functional theory methods, we scanned composition space using four criteria: (1) formation energies for operational stability: $$-150\le {E}_{{\rm {f}}}$$ − 150 ≤ E f ≤ +70 meV per atom; (2) higher strength found via interstitial electron density with Young’s moduli E > 250 GPa; (3) inverse Pugh ratio for ductility: G / B < 0.57; and (4) high melting points: T m > 2500 °C. Using rapid bulk alloy synthesis and characterization, we validated theory and down-selected promising alloy compositions and discovered Mo 72.3 W 12.8 Ta 10.0 Ti 2.5 Zr 2.5 having well-balanced RT and high- T mechanical properties. This alloy has comparable high- T compressive strength to well-known MoNbTaW but is more ductile and more creep resistant. It is also superior to a commercial Mo-based refractory alloy and a nickel-based superalloy (Haynes-282) with improved high- T tensile strength and creep resistance.

36 MATERIALS SCIENCE↗

Superconducting Properties in Arrays of Nanostructured β-Gallium

Samples of nanostructured β-Ga wires were synthesized by a novel method of metallic-flux nanonucleation. Several superconducting properties were observed, revealing the stabilization of a weak-coupling type-II-like superconductor (T c ≈ 6.2 K) with a Ginzburg-Landau parameter κ GL = 1.18. This contrasts the type-I superconductivity observed for the majority of Ga phases, including small spheres of β-Ga with diameters near 15 μm. Remarkably, our magnetization curves reveal a crossover field H D , where we propose that the Abrikosov vortices are exactly touching their neighbors inside the Ga nanowires. A phenomenological model is proposed to explain this result by assuming that only a single row of vortices is allowed inside a nanowire under perpendicular applied field, with an appreciable depletion of Cooper pair density at the nanowire edges. Lastly, these results are expected to shed light on the growing area of superconductivity in nanostructured materials.

36 MATERIALS SCIENCE↗

Charge-mediated cation deposition on metallic surfaces

This work reveals the general mechanisms of Li + cation partial reduction and further deposition under specific electrolyte conditions, and in the proximity of an electrified metal surface. The factors affecting the ion complexation and transport and resultant adsorbed structures are identified for various external electric fields and for several applied voltages. Using ab initio methods, we investigate the relation between solvent–salt structures and dynamics, cation reductive stability, and the existing electric field between electrodes, or under the applied potential if the system is designed as an electrochemical cell. In absence of an applied field, it is found that not only cation but also non-solvated salt deposition on a metallic surface is an endothermic process. However, localized surface polarization orbitals created by an external electric field affect both the thermodynamics and kinetics of the adsorption, leading to a drastic change on the energetic profile; ab initio molecular dynamics simulations describe in detail the underlying mechanisms. Externally applied bias to an electrochemical cell also changes the deposition dynamics: by examining various solvent/salt combinations, we unravel the cation deposition mechanisms at both low and moderately high voltages, determining the relative time scale of each separate process. In this work, different polyhedra formed by the metal cation and its surrounding oxygen atoms appear to be the key indicator driving deposition dynamics at different voltages. Our findings disclose the importance of selecting appropriate voltage windows for stable and uniform growth of metal anode layers, showing the mechanisms leading to impurity formation and non-uniform cation deposition, as well as the role of charged interfacial phenomena in designing stable electrode–electrolyte interfaces.

25 ENERGY STORAGE↗

Preparation and characterization of polymer blend based on sulfonated poly (ether ether ketone) and polyetherimide (SPEEK/PEI) as proton exchange membranes for fuel cells

Blends of sulfonated poly (ether ether ketone) (SPEEK) and polyetherimide (PEI) were prepared in five different weight ratios using N-methyl-2-pyrrolidone (NMP) as solvent by the solution cast technique. The degree of sulfonation (DS) of the sulfonated PEEK was determined from deuterated dimethyl sulfoxide (DMSO-d{sub 6}) solution of the purified polymer using {sup 1}H NMR method. The properties studied in the present investigation includes conductivity, water uptake, thermal stability and structure analysis of pure SPEEK as well as SPEEK-PEI polymer blend membranes. The experimental results show that the conductivity of the membranes increased with increase in temperature from 30 to 80°C, except for that of pure SPEEK membrane which increased with temperature from 30 to 60°C while its conductivity decreased with increasing temperature from 60 to 80°C. The conductivity of 70wt.%SPEEK-30wt.%PEI blend membrane at 80% relative humidity (RH) is found to be 1.361 × 10{sup −3} Scm{sup −1} at 30°C and 3.383 × 10{sup −3} Scm{sup −1} at 80°C respectively. It was also found that water uptake and thermal stability of the membranes slightly improved upon blending with PEI. Structure analysis was carried out using Fourier Transform Infrared (FTIR) spectroscopy which revealed considerable interactions between sulfonic acid group of SPEEK and imide groups of PEI. Modification of SPEEK by blending with PEI shows good potential for improving the electrical and physical properties of proton exchange membranes.

36 MATERIALS SCIENCE↗

Simultaneous measurement of specific heat and thermal conductivity in pulsed magnetic fields

Here we report an experimental setup for simultaneously measuring specific heat and thermal conductivity in feedback-controlled pulsed magnetic fields of 50 ms duration at cryogenic temperatures. A stabilized magnetic field pulse obtained by the feedback control, which dramatically improves the thermal stability of the setup and sample, is used in combination with the flash method to obtain absolute values of thermal properties up to 37.2 T in the 22–16 K temperature range. We describe the experimental setup and demonstrate the performance of the present method with measurements on single-crystal samples of the geometrically frustrated quantum spin-dimer system SrCu 2 (BO 3 ) 2 . Our proof-of-principle results show excellent agreement with data taken using a standard steady-state method, confirming the validity and convenience of the present approach.

47 OTHER INSTRUMENTATION↗

Inducing Fe moment in LaFeSi with p-block element substitution

We studied the LaFeSi phase using density functional theory based full-potential linearized augmented plane wave (FP-LAPW) method. Specifically we examined the effect of p-element substitution on the stability and magnetic properties focusing on pathways to induce Fe magnetic moments. We demonstrate that either partial or complete substitutions at the Si 2 c-site by several p-block elements lead to non-zero Fe moments. Our theoretical study shows that partially substituted LaFeSi 1-y Ga y and LaFeSi 1-y Al y are more thermodynamically stable than the fully substituted LaFeGa and LaFeAl. We also found that the P substitutions, either partial or complete, have the most negative formation energies, however the compounds containing phosphorus are non-magnetic. Our work highlights a pathway toward manipulations of the otherwise quenched Fe-moments in LaFeSi-related compounds and help in advancing the potential magnetic functionalities of LaFeX compounds.

36 MATERIALS SCIENCE↗

De novo design of D-peptide ligands: Application to influenza virus hemagglutinin

D-peptides hold great promise as therapeutics by alleviating the challenges of metabolic stability and immunogenicity in L-peptides. However, current D-peptide discovery methods are severely limited by specific size, structure, and the chemical synthesizability of their protein targets. Here, we describe a computational method for de novo design of D-peptides that bind to an epitope of interest on the target protein using Rosetta’s hotspot-centric approach. The approach comprises identifying hotspot sidechains in a functional protein–protein interaction and grafting these side chains onto much smaller structured peptide scaffolds of opposite chirality. The approach enables more facile design of D-peptides and its applicability is demonstrated by design of D-peptidic binders of influenza A virus hemagglutinin, resulting in identification of multiple D-peptide lead series. The X-ray structure of one of the leads at 2.38 Å resolution verifies the validity of the approach. This method should be generally applicable to targets with detailed structural information, independent of molecular size, and accelerate development of stable, peptide-based therapeutics.

Science & Technology - Other Topics↗

Output Feedback Stabilization for a Class of Multi-Variable Bilinear Stochastic Systems with Stochastic Coupling Attenuation

In this paper, stochastic coupling attenuation is investigated for a class of multi-variable bilinear stochastic systems and a novel output feedback m-block backstepping controller with linear estimator is designed, where gradient descent optimization is used to tune the design parameters of the controller. It has been shown that the trajectories of the closed-loop stochastic systems are bounded in probability sense and the stochastic coupling of the system outputs can be effectively attenuated by the proposed control algorithm. Moreover, the stability of the stochastic systems is analyzed and the effectiveness of the proposed method has been demonstrated using a simulated example.

47 OTHER INSTRUMENTATION↗