Flux-Balance Analysis and Mobile CRISPRi-Guided Deletion of a Conditionally Essential Gene in Shewanella oneidensis MR-1
Not Available
59 BASIC BIOLOGICAL SCIENCES↗
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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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A fluid model for the edge pressure pedestal height and width in tokamaks based on the transport constraint of particle, energy, and momentum balance
A fluid model for the tokamak edge pressure profile required by the conservation of particles, momentum and energy in the presence of specified heating and fueling sources and electromagnetic and geometric parameters has been developed. Kinetics effects of ion orbit loss are incorporated into the model. The use of this model as a “transport” constraint together with a “Peeling-Ballooning (P-B)” instability constraint to achieve a prediction of edge pressure pedestal heights and widths in future tokamaks is discussed.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
Mechanistic links between underestimated CO 2 fluxes and non-closure of the surface energy balance in a semi-arid sagebrush ecosystem
Not Available
54 ENVIRONMENTAL SCIENCES↗
True Load Balancing for Matricized Tensor Times Khatri-Rao Product
MTTKRP is the bottleneck operation in algorithms used to compute the CP tensor decomposition. For sparse tensors, utilizing the compressed sparse fibers (CSF) storage format and the CSF-oriented MTTKRP algorithms is important for both memory and computational efficiency on distributed-memory architectures. Existing intelligent tensor partitioning models assume the computational cost of MTTKRP to be proportional to the total number of nonzeros in the tensor. However, this is not the case for the CSF-oriented MTTKRP on distributed-memory architectures. We outline two deficiencies of nonzero-based intelligent partitioning models when CSF-oriented MTTKRP operations are performed locally: failure to encode processors' computational loads and increase in total computation due to fiber fragmentation. We focus on existing fine-grain hypergraph model and propose a novel vertex weighting scheme that enables this model encode correct computational loads of processors. We also propose to augment the fine-grain model by fiber nets for reducing the increase in total computational load via minimizing fiber fragmentation. In this way, the proposed model encodes minimizing the load of the bottleneck processor. In conclusion, parallel experiments with real-world sparse tensors on up to 1024 processors prove the validity of the outlined deficiencies and demonstrate the merit of our proposed improvements in terms of parallel runtimes.
97 MATHEMATICS AND COMPUTING↗
Electron energy balance and ionization in the channel of a stationary plasma thruster
The paper presents results of numerical simulations of the electron dynamics in the field of the azimuthal and longitudinal waves excited in the channel of a stationary plasma thruster (SPT). The simulations are based on the experimentally determined wave characteristics. The simulation results show that the azimuthal wave displayed as ionization instability enhances electron transport along the thruster channel. It is established that the electron transport rate in the azimuthal wave increases as compared to the rate of diffusion caused by electron scattering from neutral atoms in proportion to the ratio between the times of electron− neutral collisions responsible for ionization and elastic electron scattering, respectively. An expression governing the plasma conductivity is derived with allowance for electron interaction with the azimuthal wave. The Hall parameter, the electron component of the discharge current, and the electron heating power in the thruster channel are calculated for two model SPTs operating with krypton and xenon. The simulation results agree well with the results of experimental studies of these two SPTs.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
Water balance in the Amazon basin from a land surface model ensemble
Despite recent advances in modeling and remote sensing of land surfaces, estimates of the global water budget are still fairly uncertain. The objective of this study is to evaluate the water budget of the Amazon basin based on several state-of-the-art land surface model (LSM) outputs. Water budget variables [total water storage (TWS), evapotranspiration (ET), surface runoff (R) and baseflow (B)] are evaluated at the basin scale using both remote sensing and in situ data. Fourteen LSMs were run using meteorological forcings at a 3-hourly time step and 1-degree spatial resolution. Three experiments are performed using precipitation which has been rescaled to match monthly global GPCP and GPCC datasets and the daily HYBAM dataset for the Amazon basin. R and B are used to force the Hydrological Modeling and Analysis Platform (HyMAP) river routing scheme and simulated discharges are compared against observations at 165 gauges. Simulated ET and TWS are compared against FLUXNET and MOD16A2 evapotranspiration, and GRACE TWS estimates in different catchments. At the basin scale, simulated ET ranges from 2.39mm.d-1 to 3.26mm.d-1 and a low spatial correlation between ET and P indicates that evapotranspiration does not depend on water availability over most of the basin. Results also show that other simulated water budget variables vary significantly as a function of both the LSM and precipitation used, but simulated TWS generally agree at the basin scale. The best water budget simulations resulted from experiments using the HYBAM dataset, mostly explained by a denser rainfall gauge network the daily rescaling.
water balance, Amazon, land surface models↗
Integrating Remote Sensing, Field Observations, and Models to Understand Disturbance and Climate Effects on the Carbon Balance of the West Coast U.S.
As an element of NACP research, the proposed investigation is a two pronged approach that derives and evaluates a regional carbon (C) budget for Oregon, Washington, and California. Objectives are (1) Use multiple data sources, including AmeriFlux data, inventories, and multispectral remote sensing data to investigate trends in carbon storage and exchanges of CO 2 and water with variation in climate and disturbance history; (2) Develop and apply regional modeling that relies on these multiple data sources to reduce uncertainty in spatial estimates of carbon storage and NEP, and relative contributions of terrestrial ecosystems and anthropogenic emissions to atmospheric CO 2 in the region; (3) Model terrestrial carbon processes across the region, using the Biome-BGC terrestrial ecosystem model, and an atmospheric inverse modeling approach to estimate variation in rate and timing of terrestrial uptake and feedbacks to the atmosphere in response to climate and disturbance.
54 ENVIRONMENTAL SCIENCES↗
Report on Integration of Existing Grid Models for N-R HES Interaction Focused on Balancing Authorities for Sub-hour Penalties and Opportunities
This report provides a summary of the effort in the Nuclear-Renewable Hybrid Energy System (N-R HES) project on the level 4 milestone to consider integration of existing grid models into the factors for optimization on shorter time intervals than the existing electric grid models with the Risk Analysis Virtual Environment (RAVEN) and Modelica [1] optimizations and economic analysis that are the focus of the project to date.
21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
Operating Electronic Balances [Slides]
Abstract not provided.
96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗
Nanoparticle Catalyst Formation and Subsequent Sintering: Size-Distribution Fundamental Understanding and Catalyst Control via Mechanism-Enabled Population Balance Modeling (Final Report)
The challenge of elucidating the chemical mechanisms by which nano- and other particles form, and then using those mechanisms to understand, analyze, and ideally predict particle-size and particle-size distributions, was undertaken. Thanks to multi-year, longer-term DOE support each of these challenges was successfully met. The community is now able to both predict, and control in cases where the underlying mechanism of particle formation has been determined, the key PS and PSD that are, in turn, critical properties that strongly influence the catalytic and other physical properties of nano- and larger particles across nature.
36 MATERIALS SCIENCE↗
Solar, Wind, and Load Forecasting Dataset for MISO, NYISO, and SPP Balancing Areas
The Performance-based Energy Resource Feedback, Optimization, and Risk Management (PERFORM) program is an initiative intended to foster "a fundamental shift in grid management rooted in an understanding of asset risk and system risk" (ARPA-E 2020). Launched by the Advanced Research Projects Agency-Energy (ARPA-E), the program supports efforts to incorporate uncertainty in electric power decision making. In support of PERFORM, the National Renewable Energy Laboratory (NREL) has produced a set of time-coincident forecasts of solar, wind, and load profiles. As part of Phase I of the PERFORM effort, NREL created a dataset that consists of one year of time-coincident load, wind, and solar actuals and probabilistic forecasts based on data from the Electric Reliability Council of Texas (ERCOT) (Bryce et al. 2023). In Phase II, NREL developed similar datasets for three other U.S. Independent System Operators (ISO): the Midcontinent Independent System Operator (MISO), the New York Independent System Operator (NYISO), and the Southwest Power Pool (SPP).
24 POWER TRANSMISSION AND DISTRIBUTION↗
Community Modeling and Flux Balance Analysis of Synthetic Bacterial Community in MOPS Medium
This narrative was used for the 4-member community modeling using MOPS medium for the bacteria isolated from Populus deltoides (PD). 10 bacterial strains isolated from PD were co-cultured as a synthetic microbial community in MOPS minimal medium. After 15 passages there were 4 members survived in MOPS medium. The genome of each community member was sequenced and uploaded into KBase for genome annotation and metabolic modeling. To simulate the metabolic interactions among the finally surviving community members, the individual metabolic models of each strain were merged into a compartmentalized community model, and then the community model was gapfilled using MOPS medium. The FBA modeling was performed and the metabolites exchange among community members was proposed. The publication by Jia Wang, Dana L. Carper, Leah H. Burdick, Him Shrestha, Manasa Appidi, Paul E. Abraham, Collin M. Timm, Robert L. Hettich, Dale A. Pelletier, Mitchel J. Doktycz can be found here: https://doi.org/10.1016/j.csbj.2021.03.034
59 BASIC BIOLOGICAL SCIENCES↗
Community Modeling and Flux Balance Analysis of Synthetic Bacterial Community in R2A Medium
This narrative was used for the 3-member community modeling using R2A medium for the bacteria isolated from Populus deltoides (PD). 10 bacteiral strains isolated from PD were co-cultured as a synthetic microbial community in R2A complex medium. After 15 passages, there were 3 members survived in R2A medium. The genome of each community member was sequenced and uploaded into KBase for genome annotation and metabolic modeling. To simulate the metabolic interactions among the finally surviving community members, the individual metabolic models of each strain were merged into a compartmentalized community model, and then the community model was gapfilled using R2A medium. The FBA modeling was performed and the metabolites exchange among community members was proposed. The publication by Jia Wang, Dana L. Carper, Leah H. Burdick, Him Shrestha, Manasa Appidi, Paul E. Abraham, Collin M. Timm, Robert L. Hettich, Dale A. Pelletier, Mitchel J. Doktycz can be found here: https://doi.org/10.1016/j.csbj.2021.03.034
59 BASIC BIOLOGICAL SCIENCES↗
Comparative Analysis and Synthesis of Schemes of Balanced Suspension of Planetary Rovers with Autonomous Control
The passive suspension of a six-wheeled self-propelled chassis is analyzed in terms of the influence of its kinematic and geometric parameters on the configuration, cross-country ability, and static stability of low-speed autonomous planetary rovers. The results of the synthesis of a new suspension scheme for a four-wheeled chassis are presented.
42 ENGINEERING↗
Single-genotype syntrophy by Rhodopseudomonas palustris is not a strategy to aid redox balance during anaerobic degradation of lignin monomers
Rhodopseudomonas palustris has emerged as a model microbe for the anaerobic metabolism of p-coumarate, which is an aromatic compound and a primary component of lignin. However, under an aerobic conditions, R.palustris must actively eliminate excess reducing equivalents through a number of known strategies (e.g., CO 2 fixation, H 2 evolution) to avoid lethal redox imbalance. Others had hypothesized that to ease the burden of this redox imbalance, a clonal population of R.palustris could functionally differentiate into a pseudo-consortium. Within this pseudo-consortium, one sub-population would perform the aromatic moiety degradation into acetate, while the other sub-population would oxidize acetate, resulting in a single-genotype syntrophy through acetate sharing. Here, the objective was to test this hypothesis by utilizing microbial lelectrochemistry as a research tool with the extrac ellular-electron-transferring bacterium Geobacter sulfurreducens as a reporter strain replacing the hypothesized acetate-oxidizing sub-population. We used a 2×4 experimental design with pure cultures of R. palustris in serum bottles and co-cultures of R. palustris and G.sulfurreducens in bioelectrochemical systems.This experimental design included growth medium with and without bicarbonate to induce non-lethal and lethal redox imbalance conditions, respectively, in R. palustris . Finally, the design also included a mutant strain (NifA*) of R. palustris, which constitutively produces H 2 , to serve both as a positive control for metabolite secretion (H 2 ) to G. sulfurreducens , and as a non-lethal redox control for without bicarbonate conditions. Our results demonstrate that acetate sharing between different sub-populations of R. palustris does not occur while degrading p-coumarate under either non-lethal or lethal redox imbalance conditions. Furthermore, this work highlights the strength of microbial electrochemistry as a tool for studying microbial syntrophy.
60 APPLIED LIFE SCIENCES↗
THE CHARGE STATE OF POLYCYCLIC AROMATIC HYDROCARBONS ACROSS REFLECTION NEBULAE: PAH CHARGE BALANCE AND CALIBRATION
Low-resolution Spitzer spectral map data (>1700 spectra) of ten reflection nebulae (RNe) fields are analyzed using the data and tools available through the NASA Ames PAH IR Spectroscopic Database. The PAH emission is broken down into PAH charge state using a database fitting approach. Here, the physics of the PAH emission process is taken into account and uses target appropriate parameters, e.g., a stellar radiation model for the exciting star. The breakdown results are combined with results derived using the traditional PAH band strength approach, which interprets particular PAH band strength ratios as proxies for the PAH charge state, e.g., the 6.2/11.2 μ m PAH band strength ratio. These are successfully calibrated against their database equivalent; the PAH ionized fraction ( f {sub i} ). The PAH ionized fraction is converted into the PAH ionization parameter, which relates the PAH ionized fraction to the strength of the radiation field, gas temperature and electron density. The behavior of the 12.7 μ m PAH band is evaluated as a tracer for PAH ionization and erosion. The plot of the 8.6 versus 11.2 μ m PAH band strength for the northwest photo-dominated region (PDR) in NGC 7023 is shown to be a robust diagnostic template for the PAH ionized fraction. Remarkably, most of the other RNe fall within the limits set by NGC 7023. Finally, PAH spectroscopic templates are constructed and verified as principal components. Template spectra derived from NGC 7023 and NGC 2023 compare extremely well with each other, with those derived for NGC 7023 successfully reproducing the PAH emission observed from NGC 2023.
79 ASTRONOMY AND ASTROPHYSICS↗