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All sourcesNASA NTRSDOE OSTI
NASA NTRSDate not supplied

ISRU Pilot Excavator Wheel Testing in Lunar Regolith Simulant

The ISRU Pilot Excavator, or IPEx, is a robotic excavator funded by NASA’s Space Technology Mission Directorate (STMD). The Concept of Operations for IPEx involves the robot driving on the lunar surface up to 70 km at a speed of up to 30 cm/s. As such, it is critical to the mission’s success to optimize the design of the wheels for performance in lunar conditions, specifically in lunar regolith. To achieve this, an array of tests was completed to observe the effects of various wheel design choices on the driving performance of the wheels in lunar regolith simulant. In order to facilitate testing, we designed a 12” dia. configurable wheel to allow for interchangeability between various wheel formations. Two types of wheel parts were designed to be swapped: cleats, which form the tread of the wheel; and grousers, which protrude from the treads. The test variables that we considered were as follows: square vs. round wheel shape, solid vs. perforated cleats, cleat spacing, grouser height, and grouser spacing. By combining different settings of each of these test variables, ten discrete wheel designs were created and tested. The configurable test wheels were mounted on the Regolith Advanced Surface Systems Operations Robot (RASSOR) developed at NASA’s Kennedy Space Center. In our experiments, the robot was driven at a controlled speed across a prepared surface of BP-1 lunar regolith simulant. Four types of tests were conducted: circle driving, straight driving, slope driving, and drawbar pull. The driving tests were chosen to mimic a variety of conditions in which IPEx may be expected to operate, and the drawbar pull test was chosen to provide a standard of comparison with existing wheel design literature. The circle and straight driving tests were each performed at different levels: for the circle driving test, the robot was driven at a constant linear speed and three different angular speeds, while for the straight driving test, the robot was driven at three different linear speeds. The data collected from these tests included the power usage from each of the wheels, measurements of the tread patterns left in the regolith surface, and the amount of slip the wheels experienced, which was calculated using data from an OptiTrack motion capture system. From the results of these experiments, we found that certain test variables were more significant than others in determining performance for each type of test, and no single wheel design clearly outperformed the others in all areas. The details of our findings will be discussed further in this paper. This data will be utilized to inform the design of the wheels for IPEx and can provide a basis for the design of wheels for future lunar terrain vehicles.

RASSOR↗
DOE OSTI2022

Warm Unit Stand Analysis for Proton Improvement Project II

The Proton Improvement Project II, commonly referred to as PIP II, is a linear accelerator overhaul at Fermilab to eventually double the output of its existing proton beam to continue to be the leading force in high energy physics. The proton beam is created through a series of high frequency cryomodules that must be connected utilizing a combination of magnets and vacuum pumps to ensure the beam is properly aligned. A housing mechanism for the magnets and vacuum pumps (Warm Units) will be placed between the cryomodules for realignment and require multiple stages of 6 degree-of-freedom adjustment options, to ensure that the beam alignment can fit all realistic requirements. Extensive testing and design modifications on the Warm Unit stand was completed to confirm not only the strength of the unit in nominal configuration, but also at each possible adjustment orientation for each 6 degree-of-freedom option. Structural analysis was also completed for various unique loading conditions i ncluding transportation loading and confirming the unit satisfies international building code. Simultaneously, testing and design modifications were done to confirm that the frequency modes of the system resided outside of concern ranges, which is determined by Fermilab safety codes and is set to exceed 15 Hz. Design changes that simultaneously stiffen the system to raise the lowest frequency modes while expanding access for technicians and allow for easier fabrication were developed and implemented into the Warm Unit stand. Various relationships between the design changes and the overall vibrational patterns were also developed for future use and study as the rest of PIP II matures.

43 PARTICLE ACCELERATORS↗
DOE OSTI2015

Mega salt-stone Disposal Units at the Savannah River site - 15322

The Liquid Waste (LW) System at Savannah River Site (SRS) is a highly integrated operation involving safely storing radioactive liquid waste in underground storage tanks; vitrifying the higher activity waste; and storing the vitrified waste in stainless steel canisters until permanent disposition is provided; and removing, treating, and dispositioning the low-level waste (LLW) fraction in concrete with final disposition being the salt-stone Disposal Units (SDUs) at the SRS salt-stone Disposal Facility (SDF). Treatment and disposition of salt waste is the critical path to completion of the SRS Liquid Waste (LW) Disposition Program. Successful and timely salt waste removal and disposal is integral to efforts by SRS to proceed with all aspects of tank cleanup and removal from service. The construction and implementation of the first-of-a-kind Mega SDU (MSDU) is underway to provide the most environmentally safe and cost-effective solution for salt processing and long term storage of the LLW at SRS. The MSDU design is a duplicate of the Water Treatment Tanks located in Syracuse, New York. This commercial design, developed by an affiliate of Savannah River Remediation LLC (SRR), was slightly modified to meet the requirements of the nuclear industry. The MSDU is a critical link in salt disposition. In comparison to the current SDU design, approximately 46 meters (150 feet) in diameter and 7 meters (22 feet) tall with a capacity of approximately 11,000 m{sup 3} (3.0 million gallons), the MSDU is 114 meters (375 feet) in diameter and 13 meters (43 feet) tall which will provide a capacity of approximately 121,000 m{sup 3} (32.0 million gallons) to receive the LLW fraction embedded in a grout-like form. The MSDU will provide the taxpayers an estimated $300 M in life cycle savings at SRS by reducing the number of SDUs from the estimated 72 smaller vessels to 7 of the new larger vessels. Additionally, based on the reduced number of SDUs, the environmental footprint is significantly reduced as well. Due to the similarities between the existing SDU design and the MSDU design, efforts to integrate the MSDU into the LW system are minimal. Required infrastructure modifications will consist of tying into the existing grout and drain lines, as well as the installation of new electrical and instrumentation services for the MSDU. Grout flow testing has been successfully completed, with results showing the MSDU will be a safe and cost-effective replacement for the existing SDUs. The MSDU design is complete, Critical Decision (CD)-3 was approved on June 17, 2014, and the first MSDU, salt-stone Disposal Unit n.6 (SDU 6), is being constructed in the existing LW SDF operated by SRR as a Capital Line Item project. As an added benefit, once constructed, lessons learned will be available for future MSDUs at SRS and throughout the complex as necessary. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2018

Evaluation of the Waste Streams from Management of Reprocessing Off-Gas Streams - 18483

Nuclear fuel reprocessing is being considered in the United States as part of an effort to help meet US energy needs and as a means to improve waste management. During the chemical processing of UNF to recover the valuable components for reuse, a number of volatile radionuclides will be released into the off-gas streams of the reprocessing plant. These volatile radionuclides include H-3, C-14, Kr-85, and I-129. Off-gas abatement systems for the volatile radionuclides will be required to ensure that air emissions from a UNF reprocessing facility can meet or exceed emission requirements set forth by the US Environmental Protection Agency and the US Nuclear Regulatory Commission. An initial engineering evaluation of offgas abatement systems was completed recently. The evaluation addressed the designs of the head-end offgas treatment system, which typically includes both the shear off-gas and the dissolver off-gas and vessel off-gas treatment system. Based on this study, the waste volumes for each of the four primary volatile radionuclides (H-3, C-14, Kr-85, and I-129) were estimated. Included in these estimates were the nonradioactive isotopes and the 'tramp' elements found in air (e.g., Kr and C-12 as CO{sub 2}) and process chemicals (e.g., I and Cl). Because the final waste form for these radionuclides has not been selected, estimated volumes were calculated for various alternative waste forms as appropriate. The resulting waste volume for I was found to be highly dependent on the final waste form selected and increased by a factor of 2 to 4 by tramp halogens that would be released into the off-gas stream from the process chemicals. The volume of tritiated water from the fuel was quite small, but the estimated volume of the final waste form depended on the tritium management approach employed within the reprocessing plant. The Kr waste volume was calculated assuming pure Kr (i.e., assuming complete separation of Xe and Ar). For the case of no Xe separation, the estimated waste volume increased by factor of ∼10. Argon from the air, if not removed, increased the estimated volume by a factor of 425. The estimated volume of C-14 waste was dominated by the CO{sub 2} from the air leaking into the processing cell. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
NASA NTRS2010

Z-Pinch Pulsed Plasma Propulsion Technology Development

Fusion-based propulsion can enable fast interplanetary transportation. Magneto-inertial fusion (MIF) is an approach which has been shown to potentially lead to a low cost, small reactor for fusion break even. The Z-Pinch/dense plasma focus method is an MIF concept in which a column of gas is compressed to thermonuclear conditions by an axial current (I approximates 100 MA). Recent advancements in experiments and the theoretical understanding of this concept suggest favorable scaling of fusion power output yield as I(sup 4). This document presents a conceptual design of a Z-Pinch fusion propulsion system and a vehicle for human exploration. The purpose of this study is to apply Z-Pinch fusion principles to the design of a propulsion system for an interplanetary spacecraft. This study took four steps in service of that objective; these steps are identified below. 1. Z-Pinch Modeling and Analysis: There is a wealth of literature characterizing Z-Pinch physics and existing Z-Pinch physics models. In order to be useful in engineering analysis, simplified Z-Pinch fusion thermodynamic models are required to give propulsion engineers the quantity of plasma, plasma temperature, rate of expansion, etc. The study team developed these models in this study. 2. Propulsion Modeling and Analysis: While the Z-Pinch models characterize the fusion process itself, propulsion models calculate the parameters that characterize the propulsion system (thrust, specific impulse, etc.) The study team developed a Z-Pinch propulsion model and used it to determine the best values for pulse rate, amount of propellant per pulse, and mixture ratio of the D-T and liner materials as well as the resulting thrust and specific impulse of the system. 3. Mission Analysis: Several potential missions were studied. Trajectory analysis using data from the propulsion model was used to determine the duration of the propulsion burns, the amount of propellant expended to complete each mission considered. 4. Vehicle Design: To understand the applicability of Z-Pinch propulsion to interplanetary travel, it is necessary to design a concept vehicle that uses it -- the propulsion system significantly impacts the design of the electrical, thermal control, avionics and structural subsystems of a vehicle. The study team developed a conceptual design of an interplanetary vehicle that transports crew and cargo to Mars and back and can be reused for other missions. Several aspects of this vehicle are based on a previous crewed fusion vehicle study -- the Human Outer Planet Exploration (HOPE) Magnetized Target Fusion (MTF) vehicle. Portions of the vehicle design were used outright and others were modified from the MTF design in order to maintain comparability.

Polsgrove, Tara↗
DOE OSTI2021

Big Adaptive Rotor Phase I Final Report

The Big Adaptive Rotor (BAR) project was initiated by the U.S. Department of Energy (DOE) in 2018 with the goal of identifying novel technologies that can enable large (>100 meter [m]) blades for low-specific-power wind turbines. Five distinct tasks were completed to achieve this goal: 1. Assessed the trends, impacts, and value of low-specific-power wind turbines; 2. Developed a wind turbine blade cost-reduction road map study; 3. Completed research-and-development opportunity screening; 4. Performed detailed design and analysis; and, 5. Assessed low-cost carbon fiber. These tasks were completed by the national laboratory team consisting of Sandia National Laboratories (Sandia), the National Renewable Energy Laboratory (NREL), and Lawrence Berkeley National Laboratory.

17 WIND ENERGY↗
NASA NTRS1994

System Sensitivity Analysis Applied to the Conceptual Design of a Dual-Fuel Rocket SSTO

This paper reports the results of initial efforts to apply the System Sensitivity Analysis (SSA) optimization method to the conceptual design of a single-stage-to-orbit (SSTO) launch vehicle. SSA is an efficient, calculus-based MDO technique for generating sensitivity derivatives in a highly multidisciplinary design environment. The method has been successfully applied to conceptual aircraft design and has been proven to have advantages over traditional direct optimization methods. The method is applied to the optimization of an advanced, piloted SSTO design similar to vehicles currently being analyzed by NASA as possible replacements for the Space Shuttle. Powered by a derivative of the Russian RD-701 rocket engine, the vehicle employs a combination of hydrocarbon, hydrogen, and oxygen propellants. Three primary disciplines are included in the design - propulsion, performance, and weights & sizing. A complete, converged vehicle analysis depends on the use of three standalone conceptual analysis computer codes. Efforts to minimize vehicle dry (empty) weight are reported in this paper. The problem consists of six system-level design variables and one system-level constraint. Using SSA in a 'manual' fashion to generate gradient information, six system-level iterations were performed from each of two different starting points. The results showed a good pattern of convergence for both starting points. A discussion of the advantages and disadvantages of the method, possible areas of improvement, and future work is included.

Olds, John R.↗
NASA NTRS1997

Nonlinear Dynamic Analysis of Disordered Bladed-Disk Assemblies

In a effort to address current needs for efficient, air propulsion systems, we have developed some new analytical predictive tools for understanding and alleviating aircraft engine instabilities which have led to accelerated high cycle fatigue and catastrophic failures of these machines during flight. A frequent cause of failure in Jets engines is excessive resonant vibrations and stall flutter instabilities. The likelihood of these phenomena is reduced when designers employ the analytical models we have developed. These prediction models will ultimately increase the nation's competitiveness in producing high performance Jets engines with enhanced operability, energy economy, and safety. The objectives of our current threads of research in the final year are directed along two lines. First, we want to improve the current state of blade stress and aeromechanical reduced-ordered modeling of high bypass engine fans, Specifically, a new reduced-order iterative redesign tool for passively controlling the mechanical authority of shroudless, wide chord, laminated composite transonic bypass engine fans has been developed. Second, we aim to advance current understanding of aeromechanical feedback control of dynamic flow instabilities in axial flow compressors. A systematic theoretical evaluation of several approaches to aeromechanical feedback control of rotating stall in axial compressors has been conducted. Attached are abstracts of two .papers under preparation for the 1998 ASME Turbo Expo in Stockholm, Sweden sponsored under Grant No. NAG3-1571. Our goals during the final year under Grant No. NAG3-1571 is to enhance NASA's capabilities of forced response of turbomachines (such as NASA FREPS). We with continue our development of the reduced-ordered, three-dimensional component synthesis models for aeromechanical evaluation of integrated bladeddisk assemblies (i.e., the disk, non-identical bladeing etc.). We will complete our development of component systems design optimization strategies for specified vibratory stresses and increased fatigue life prediction of assembly components, and for specified frequency margins on the Campbell diagrams of turbomachines. Finally, we will integrate the developed codes with NASA's turbomachinery aeromechanics prediction capability (such as NASA FREPS).

McGee, Oliver G., III↗
DOE OSTI2024

HighNESS conceptual design report: Volume I

The European Spallation Source, currently under construction in Lund, Sweden, is a multidisciplinary international laboratory. Once completed to full specifications, it will operate the world’s most powerful pulsed neutron source. Supported by a 3 million Euro Research and Innovation Action within the EU Horizon 2020 program, a design study (HighNESS) has been completed to develop a second neutron source located below the spallation target. Compared to the first source, designed for high cold and thermal brightness, the new source has been optimized to deliver higher intensity, and a shift to longer wavelengths in the spectral regions of cold (CN, 2–20 Å), very cold (VCN, 10–120 Å), and ultracold (UCN, >500 Å) neutrons. The second source comprises a large liquid deuterium moderator designed to produce CN and support secondary VCN and UCN sources. Various options have been explored in the proposed designs, aiming for world-leading performance in neutronics. These designs will enable the development of several new instrument concepts and facilitate the implementation of a high-sensitivity neutron-antineutron oscillation experiment (NNBAR). This document serves as the Conceptual Design Report for the HighNESS project, representing its final deliverable.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
NASA NTRS1983

Graphite/Larc-160 technology demonstration segment test results

A structural test program was conducted on a Celion/LARC-160 graphite/polyimide technology demonstration segment (TDS) to verify the technology. The 137 x 152 cm (54 x 60 in.) TDS simulates a full-scale section of the orbiter composite body flap design incorporating three ribs and extending from the forward cove back to the rear spar. The TDS was successfully subjected to mechanical loads and thermal environments (-170 to 316 C) simulating 100 shuttle orbiter missions. Successful completion of the test program verified the design, analysis, and fabrication methodology for bonded Gr/PI honeycomb sandwich structure and demonstration that Gr/PI composite technology readiness is established.

Morita, W. H.↗
NASA NTRS1994

Description of the COMRADE experiment

The COMRADE experiment is designed to return minimally degraded particles to earth along with complete in situ information concerning mass, velocity, and trajectory of encountered particles. The objectives of the program are very diverse. A set of flight-tested active detectors will be combined in an array to identify some of the physical properties of an incident grain, e.g., velocity vector, momentum, and mass. The use of passive detectors gives access to the chemical and isotopical properties of the grains in the micrometer size range. We are concerned simultaneously with a destructive capture, using metallic collectors, and a nondestructive capture, using a new low-density target in which the impacting grains stop, practically intact. The primary objectives for this mission are (1) to identify the particle remnants of the micrometer-sized grains having impacted on purposely designed metallic collectors, for complete and detailed chemical, isotopic, and organic analysis, thereby determining grain composition as well as the existence of organic and inorganic molecules, to be related with the possible cometary origin of the grains showing an extraterrestrial signature; (2) to return captured intact particles to earth for complete and detailed chemical, isotopic, spectral, mineralogical, and organic analysis, thereby determining grain composition as well as the existence of organic and inorganic molecules; and (3) to capture micrometer/submicrometer dust grains in a manner that ensures minimal particle degradation and guarantees state-of-the-art confidence in measurement of the in situ particle parameters including trajectory, velocity vector, mass, and flux distributions.

Borg, Janet↗
DOE OSTI2015

NSLS-II injector commissioning and initial operation

The injector for the National Synchrotron Light Source II (NSLS-II) storage ring consists of a 3 GeV booster synchrotron and a 200 MeV S-band linac. The linac was designed to produce either a single bunch with a charge of 0.5 nC of electrons or a train of bunches up to 300 ns long containing a total charge of 15 nC. The booster was designed to accelerate up to 15 nC each cycle in a train of bunches up to 300 ns long. Linac commissioning was completed in April 2012. Booster commissioning was started in November 2013 and completed in March 2014. All of the significant design goals were satisfied including beam emittance, energy spread, and transport efficiency. While the maximum booster charge accelerated was only 10 nC, this has proven to be more than sufficient for storage ring commissioning and operation. The injector has operated reliably during storage ring operation since then. Results will be presented showing measurements of linac and booster operating parameters achieved during commissioning and initial operation. Operating experience and reliability during the first year of NSLS-II operation will be discussed.

43 PARTICLE ACCELERATORS↗
NASA NTRS2006

Weather related continuity and completeness on Deep Space Ka-band links: statistics and forecasting

In this paper the concept of link 'stability' as means of measuring the continuity of the link is introduced and through it, along with the distributions of 'good' periods and 'bad' periods, the performance of the proposed Ka-band link design method using both forecasting and long-term statistics has been analyzed. The results indicate that the proposed link design method has relatively good continuity and completeness characteristics even when only long-term statistics are used and that the continuity performance further improves when forecasting is employed. .

weather forcasting↗
NASA NTRS1980

Coal gasification systems engineering and analysis, volume 2

The major design related features of each generic plant system were characterized in a catalog. Based on the catalog and requirements data, approximately 17 designs and cost estimates were developed for MBG and alternate products. A series of generic trade studies was conducted to support all of the design studies. A set of cost and programmatic analyses were conducted to supplement the designs. The cost methodology employed for the design and sensitivity studies was documented and implemented in a computer program. Plant design and construction schedules were developed for the K-T, Texaco, and B&W MBG plant designs. A generic work breakdown structure was prepared, based on the K-T design, to coincide with TVA's planned management approach. An extensive set of cost sensitivity analyses was completed for K-T, Texaco, and B&W design. Product price competitiveness was evaluated for MBG and the alternate products. A draft management policy and procedures manual was evaluated. A supporting technology development plan was developed to address high technology risk issues. The issues were identified and ranked in terms of importance and tractability, and a plan developed for obtaining data or developing technology required to mitigate the risk.

Source record↗
NASA NTRS2013

Goal-Function Tree Modeling for Systems Engineering and Fault Management

The draft NASA Fault Management (FM) Handbook (2012) states that Fault Management (FM) is a "part of systems engineering", and that it "demands a system-level perspective" (NASAHDBK- 1002, 7). What, exactly, is the relationship between systems engineering and FM? To NASA, systems engineering (SE) is "the art and science of developing an operable system capable of meeting requirements within often opposed constraints" (NASA/SP-2007-6105, 3). Systems engineering starts with the elucidation and development of requirements, which set the goals that the system is to achieve. To achieve these goals, the systems engineer typically defines functions, and the functions in turn are the basis for design trades to determine the best means to perform the functions. System Health Management (SHM), by contrast, defines "the capabilities of a system that preserve the system's ability to function as intended" (Johnson et al., 2011, 3). Fault Management, in turn, is the operational subset of SHM, which detects current or future failures, and takes operational measures to prevent or respond to these failures. Failure, in turn, is the "unacceptable performance of intended function." (Johnson 2011, 605) Thus the relationship of SE to FM is that SE defines the functions and the design to perform those functions to meet system goals and requirements, while FM detects the inability to perform those functions and takes action. SHM and FM are in essence "the dark side" of SE. For every function to be performed (SE), there is the possibility that it is not successfully performed (SHM); FM defines the means to operationally detect and respond to this lack of success. We can also describe this in terms of goals: for every goal to be achieved, there is the possibility that it is not achieved; FM defines the means to operationally detect and respond to this inability to achieve the goal. This brief description of relationships between SE, SHM, and FM provide hints to a modeling approach to provide formal connectivity between the nominal (SE), and off-nominal (SHM and FM) aspects of functions and designs. This paper describes a formal modeling approach to the initial phases of the development process that integrates the nominal and off-nominal perspectives in a model that unites SE goals and functions of with the failure to achieve goals and functions (SHM/FM). This methodology and corresponding model, known as a Goal-Function Tree (GFT), provides a means to represent, decompose, and elaborate system goals and functions in a rigorous manner that connects directly to design through use of state variables that translate natural language requirements and goals into logical-physical state language. The state variable-based approach also provides the means to directly connect FM to the design, by specifying the range in which state variables must be controlled to achieve goals, and conversely, the failures that exist if system behavior go out-of-range. This in turn allows for the systems engineers and SHM/FM engineers to determine which state variables to monitor, and what action(s) to take should the system fail to achieve that goal. In sum, the GFT representation provides a unified approach to early-phase SE and FM development. This representation and methodology has been successfully developed and implemented using Systems Modeling Language (SysML) on the NASA Space Launch System (SLS) Program. It enabled early design trade studies of failure detection coverage to ensure complete detection coverage of all crew-threatening failures. The representation maps directly both to FM algorithm designs, and to failure scenario definitions needed for design analysis and testing. The GFT representation provided the basis for mapping of abort triggers into scenarios, both needed for initial, and successful quantitative analyses of abort effectiveness (detection and response to crew-threatening events).

Patterson, Jonathan D.↗
NASA NTRS2002

Maximum Likelihood Estimation of the Broken Power Law Spectral Parameters with Detector Design Applications

The method of Maximum Likelihood (ML) is used to estimate the spectral parameters of an assumed broken power law energy spectrum from simulated detector responses. This methodology, which requires the complete specificity of all cosmic-ray detector design parameters, is shown to provide approximately unbiased, minimum variance, and normally distributed spectra information for events detected by an instrument having a wide range of commonly used detector response functions. The ML procedure, coupled with the simulated performance of a proposed space-based detector and its planned life cycle, has proved to be of significant value in the design phase of a new science instrument. The procedure helped make important trade studies in design parameters as a function of the science objectives, which is particularly important for space-based detectors where physical parameters, such as dimension and weight, impose rigorous practical limits to the design envelope. This ML methodology is then generalized to estimate broken power law spectral parameters from real cosmic-ray data sets.

Howell, Leonard W.↗
DOE OSTI2022

DIVA/DeviceEditor (DIVA) v6.0.0

The DIVA software interfaces a process in which researchers design their DNA with a web-based graphical user interface (DeviceEditor), submit their designs to a central queue, and a few weeks later receive their sequence-verified clonal constructs. Each researcher independently designs the DNA to be constructed with a web-based BioCAD tool, and presses a button to submit their designs to a central queue. Researchers have web-based access to their DNA design queues, and can track the progress of their submitted designs as they progress from "evaluation", to "waiting for reagents", to "in progress", to "complete". Researchers access their completed constructs through the central DNA repository. Along the way, all DNA construction success/failure rates are captured in a central database. Once a design has been submitted to the queue, a small number of dedicated staff evaluate the design for feasibility and provide feedback to the responsible researcher if the design is either unreasonable (e.g., encompasses a combinatorial library of a billion constructs) or small design changes could significantly facilitate the downstream implementation process. The dedicated staff then use DNA assembly design automation software to optimize the DNA construction process for the design, leveraging existing parts from the DNA repository where possible and ordering synthetic DNA where necessary. Once all requisite process inputs are available, the design progresses from "waiting for reagents" to "in progress" in the design queue. Human-readable and machine-parseable DNA construction protocols output by the DNA assembly design automation software are then executed by the dedicated staff exploiting lab automation devices wherever possible. Since the all employed DNA construction methods are sequence-agnostic, standardized (utilize the same enzymatic master mixes and reaction conditions), completely independent DNA construction tasks can be aggregated into the same multi-well plates and pursued in parallel. The resulting sets of cloned constructs can then be screened by high-throughput next-gen sequencing platforms for sequence correctness. A combination of long read-length (e.g., PacBio) and paired-end read platforms (e.g., Illumina) would be exploited depending the particular task at hand (e.g., PacBio might be sufficient to screen a set of pooled constructs with significant gene divergence). Post sequence verification, designs for which at least one correct clone was identified will progress to a "complete" status, while designs for which no correct clones were identified will progress to a "failure" status. Depending on the failure mode (e.g., no transformants), and how many prior attempts/variations of assembly protocol have been already made for a given design, subsequent attempts may be made or the design can progress to a "permanent failure" state. All success and failure rate information will be captured during the process, including at which stage a given clonal construction procedure failed (e.g., no PCR product) and what the exact failure was (e.g. assembly piece 2 missing). This success/failure rate data can be leveraged to refine the DNA assembly design process.

Plahar, Hector↗
DOE OSTI2013

DIVA V1.0

The DIVA software interfaces a process in which researchers design their DNA with a web-based graphical user interface, submit their designs to a central queue, and a few weeks later receive their sequence-verified clonal constructs. Each researcher independently designs the DNA to be constructed with a web-based BioCAD tool, and presses a button to submit their designs to a central queue. Researchers have web-based access to their DNA design queues, and can track the progress of their submitted designs as they progress from "evaluation", to "waiting for reagents", to "in progress", to "complete". Researchers access their completed constructs through the central DNA repository. Along the way, all DNA construction success/failure rates are captured in a central database. Once a design has been submitted to the queue, a small number of dedicated staff evaluate the design for feasibility and provide feedback to the responsible researcher if the design is either unreasonable (e.g., encompasses a combinatorial library of a billion constructs) or small design changes could significantly facilitate the downstream implementation process. The dedicated staff then use DNA assembly design automation software to optimize the DNA construction process for the design, leveraging existing parts from the DNA repository where possible and ordering synthetic DNA where necessary. SynTrack software manages the physical locations and availability of the various requisite reagents and process inputs (e.g., DNA templates). Once all requisite process inputs are available, the design progresses from "waiting for reagents" to "in progress" in the design queue. Human-readable and machine-parseable DNA construction protocols output by the DNA assembly design automation software are then executed by the dedicated staff exploiting lab automation devices wherever possible. Since the all employed DNA construction methods are sequence-agnostic, standardized (utilize the same enzymatic master mixes and reaction conditions), completely independent DNA construction tasks can be aggregated into the same multi-well plates and pursued in parallel. The resulting sets of cloned constructs can then be screened by high-throughput next-gen sequencing platforms for sequence correctness. A combination of long read-length (e.g., PacBio) and paired-end read platforms (e.g., Illumina) would be exploited depending the particular task at hand (e.g., PacBio might be sufficient to screen a set of pooled constructs with significant gene divergence). Post sequence verification, designs for which at least one correct clone was identified will progress to a "complete" status, while designs for which no correct clones wereidentified will progress to a "failure" status. Depending on the failure mode (e.g., no transformants), and how many prior attempts/variations of assembly protocol have been already made for a given design, subsequent attempts may be made or the design can progress to a "permanent failure" state. All success and failure rate information will be captured during the process, including at which stage a given clonal construction procedure failed (e.g., no PCR product) and what the exact failure was (e.g. assembly piece 2 missing). This success/failure rate data can be leveraged to refine the DNA assembly design process.

Source record↗