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At least 1,765 records · Page 98

Combined Falling Drop/Open Port Sampling Interface System for Automated Flow Injection Mass Spectrometry

The aim of this work was to demonstrate and to evaluate the analytical performance of a combined falling drop/open port sampling interface (OPSI) system as a simple noncontact, no-carryover, automated system for flow injection analysis with mass spectrometry. The falling sample drops were introduced into the OPSI using a widely available autosampler platform utilizing low cost disposable pipet tips and conventional disposable microtiter well plates. The volume of the drops that fell onto the OPSI was in the 7–15 μL range with an injected sample volume of several hundred nanoliters. Sample drop height, positioning of the internal capillary on the sampling end of the probe, and carrier solvent flow rate were optimized for maximum signal. Sample throughput, signal reproducibility, matrix effects, and quantitative analysis capability of the system were established using the drug molecule propranolol and its isotope labeled internal standard in water, unprocessed river water and two commercially available buffer matrices. A sample-to-sample throughput of ~45 s with a ~4.5 s base-to-base flow injection peak profile was obtained in these experiments. In addition, quantitation with minimally processed rat plasma samples was demonstrated with three different statin drugs (atorvastatin, rosuvastatin, and fluvastatin). Direct characterization capability of unprocessed samples was demonstrated by the analysis of neat vegetable oils. Employing the autosampler system for spatially resolved liquid extraction surface sampling exemplified by the analysis of propranolol and its hydroxypropranolol glucuronide phase II metabolites from a rat thin tissue section was also illustrated.

47 OTHER INSTRUMENTATION↗

An optimized search for dark matter in the galactic halo with HAWC

The Galactic Halo is a key target for indirect dark matter detection. The High Altitude Water Cherenkov (HAWC) observatory is a high-energy (~300 GeV to >100 TeV) gamma-ray detector located in central Mexico. HAWC operates via the water Cherenkov technique and has both a wide field of view of ~ 2 sr and a >95% duty cycle, making it ideal for analyses of highly extended sources. We made use of these properties of HAWC and a new background-estimation technique optimized for extended sources to probe a large region of the Galactic Halo for dark matter signals. With this approach, we set improved constraints on dark matter annihilation and decay between masses of 10 and 100 TeV. Due to the large spatial extent of the HAWC field of view, these constraints are robust against uncertainties in the Galactic dark matter spatial profile.

79 ASTRONOMY AND ASTROPHYSICS↗

Divertor detachment in the pre-fusion power operation phase in ITER during application of resonant magnetic perturbations

Detachment of the divertor plasma during application of resonant magnetic perturbation (RMP) fields is evaluated for hydrogen H-mode plasma during the first pre-fusion power operation (PFPO-1) phase in ITER by 3D plasma boundary modelling with EMC3–EIRENE. Plasma response effects from a linearized, resistive, single fluid MHD model are discussed, which includes partial screening of the externally applied field—but also field amplification near the separatrix. Furthermore, this field amplification is found to play a pivotal role for the magnetic footprint on the divertor targets, but is sensitive to model parameters. Extensions of the footprint beyond the straight portions of the ITER vertical divertor targets, optimized for high stationary heat flux handling, may be possible depending on the level of toroidal rotation in the plasma. Exhaust from the bulk plasma is guided by the helical corrugations (lobes) of the perturbed separatrix, and this results in an upstream heat flux that is distributed over these lobes with lower peak values than in the typical radial heat flux profiles seen in the absence of magnetic perturbations. As a consequence, an earlier onset (with respect to the upstream density) of detachment is found in the traditional strike zone when RMPs are applied, but secondary, non-axisymmetric strike locations appear—and those remain attached at temperatures above 10 eV. Neon seeding can mitigate these non-axisymmetric heat loads, but this becomes less efficient for large magnetic footprints.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Ocean Observations with EOS/MODIS: Algorithm Development and Post Launch Studies

Significant accomplishments made during the present reporting period include: 1) Installed spectral optimization algorithm in the SeaDas image processing environment and successfully processed SeaWiFS imagery. The results were superior to the standard SeaWiFS algorithm (the MODIS prototype) in a turbid atmosphere off the US East Coast, but similar in a clear (typical) oceanic atmosphere; 2) Inverted ACE-2 LIDAR measurements coupled with sun photometer-derived aerosol optical thickness to obtain the vertical profile of aerosol optical thickness. The profile was validated with simultaneous aircraft measurements; and 3) Obtained LIDAR and CIMEL measurements of typical maritime and mineral dust-dominated marine atmosphere in the U.S. Virgin Islands. Contemporaneous SeaWiFS imagery were also acquired.

Gordon, Howard R.↗

Parameterization retrieval of trace gas volume mixing ratios from Airborne MAX-DOAS

We present a parameterization retrieval of volume mixing ratios (VMRs) from differential slant column density (dSCD) measurements by Airborne Multi-AXis Differential Optical Absorption Spectroscopy (AMAX-DOAS). The method makes use of the fact that horizontally recorded limb spectra (elevation angle 0°) are strongly sensitive to the atmospheric layer at instrument altitude. These limb spectra are analyzed using reference spectra that largely cancel out column contributions from above and below the instrument, so that the resulting limb dSCDs, i.e., the column integrated concentration with respect to a reference spectrum, are almost exclusively sensitive to the atmospheric layers around instrument altitude. The conversion of limb dSCDs into VMRs is then realized by calculating box air mass factors (Box-AMFs) for a Rayleigh atmosphere and applying a scaling factor constrained by O 4 dSCDs to account for aerosol extinction. An iterative VMR retrieval scheme corrects for trace gas profile shape effects. Benefits of this method are (1) a fast conversion that only requires the computation of Box-AMFs in a Rayleigh atmosphere; (2) neither local aerosol extinction nor the slant column density in the DOAS reference (SCD ref ) needs to be known; and (3) VMRs can be retrieved for every measurement point along a flight track, thus increasing statistics and adding flexibility to capture concentration gradients. Sensitivity studies are performed for bromine monoxide (BrO), iodine monoxide (IO) and nitrogen dioxide (NO 2 ), using (1) simulated dSCD data for different trace gas and aerosol profiles and (2) field measurements from the Tropical Ocean tRoposphere Exchange of Reactive halogen species and Oxygenated VOC (TORERO) field experiment. For simulated data in a Rayleigh atmosphere, the agreement between the VMR from the parameterization method (VMR para ) and the true VMR (VMR true ) is excellent for all trace gases. Offsets, slopes and R 2 values for the linear fit of VMR para over VMR true are, respectively (0.008 ± 0.001) pptv, 0.988 ± 0.001, 0.987 for BrO; (-0.0066 ± 0.0001) pptv, 1.0021 ± 0.0003, 0.9979 for IO; (-0.17 ± 0.03) pptv, 1.0036 ± 0.0001, 0.9997 for NO 2 . The agreement for atmospheres with aerosol shows comparable R 2 values to the Rayleigh case, but slopes deviate a bit more from one: (0.093 ± 0.002) pptv, 0.933 ± 0.002, 0.907 for BrO; (0.0021 ± 0.0004) pptv, 0.887 ± 0.001, 0.973 for IO; (8.5 ± 0.1) pptv, 0.8302 ± 0.0006, 0.9923 for NO 2 . VMR para from field data are further compared with optimal estimation retrievals (VMR OE ). Least orthogonal distance fit of the data give the following equations: BrO para = (0.1 ± 0.2) pptv + (0.95 ± 0.14) × BrO OE ; IO para = (0.01 ± 0.02) pptv + (1.00 ± 0.12) × IO OE ; NO 2para = (3.9 ± 2.5) pptv + (0.87 ± 0.15) × NO 2OE . Overall, we conclude that the parameterization retrieval is accurate with an uncertainty of 20 % for IO, 30 % for BrO and NO 2 , but not better than 0.05 pptv IO, 0.5 pptv BrO and 10 pptv NO 2 . Finally, the retrieval is applicable over a wide range of atmospheric conditions and measurement geometries and not limited to the interpretation of vertical profile measurements in the remote troposphere.

54 ENVIRONMENTAL SCIENCES↗

Optimized Jupiter, Saturn, and Uranus interior models

A method for inverting gravitational data is the basis for the present models of Saturn, Jupiter, and Uranus, which have been computed to the third-order in rotational disturbance to the total potential and yield exact matches for recent, highly-accurate determinations of gravitational harmonics for these planets. These results indicate that a major He depletion has either not occurred in the outer layers of Jupiter or of Saturn, or that such a depletion's effect on the density profile has been masked by the presence of denser components. Considerable uncertainty characterizes Uranian models; the one presently preferred has substantial heavy-element enhancement at depth and little ice-rock separation.

Hubbard, W. B.↗

Development of a high-temperature Inconel 625 heat exchanger by model design and binder jetting additive manufacturing

A nickel-based Inconel 625 superalloy heat exchanger for high-temperature applications was developed via binder jetting additive manufacturing. The material properties were characterized first on printed and sintered parts. Two sintering temperatures were used to investigate the effects of the temperature on densification and microstructure. For channel geometry design, the heat transfer capabilities of the heat exchanger were optimized for the cross-section geometry of fluid flow channels in a counterflow configuration, and a stress analysis was conducted to investigate the effects of channel geometry. After headers were incorporated into the heat exchanger as a one-piece component, a prototype was printed. A complete depowdering was achieved via compressed air blowing, and sintering was performed with the developed profile. Ultimately, a one-piece heat exchanger with a nearly full density was obtained. Heat transfer tests were performed on this unit, and the results were compared with those from the simulations. In this study, systematic processes were developed for an additively manufactured Inconel-based heat exchanger for high-pressure, high-temperature heat transfer applications.

36 MATERIALS SCIENCE↗

Experimental study of energy-dependent angular broadening of MeV electron beams for high-resolution imaging in thick samples

In scanning transmission electron microscopy (STEM), spatial resolution is primarily influenced by the projected size of the electron probe within the specimen. In thin samples, a large semi-convergence angle enables a tightly focused beam and sub-nanometer resolution. However, in thick specimens, resolution is fundamentally limited by transverse beam broadening from multiple large-angle scattering events—for example, a probe with 10 mrad angular divergence can broaden by ∼100 nm over a 10 μm path. Since this broadening scales inversely with beam energy, MeV-STEM offers a promising route for high-resolution imaging in thick materials. To quantitatively assess this effect, we performed high-precision measurements at UCLA’s PEGASUS beamline, characterizing beam divergence and intensity profiles for 3–8 MeV electrons transmitted through a wedged-silicon sample of varying thickness. Our results reconcile discrepancies among analytical models and validate Monte Carlo simulations. Here, we find that increasing beam energy from 3.0 to 5.8 MeV reduces angular broadening by a factor of 2.6, with diminishing returns observed at 7.6 MeV. These findings provide a quantitative framework for optimizing MeV-STEM parameters in high-resolution imaging of thick biological and microelectronic specimens, and for guiding beam energy selection in other advanced imaging modes beyond STEM.

36 MATERIALS SCIENCE↗

Integrated control of individual plasma scalars with simultaneous neoclassical tearing-mode suppression

A novel integrated-control architecture has been tested in nonlinear, one-dimensional simulations using the control-oriented transport simulator (COTSIM©) and in DIII-D experiments. Integrated architectures that can perform continuous-mission control while also handling off-normal events will be vital in future reactor-grade tokamaks. Continuous-mission controllers for individual magnetic and kinetic scalars (thermal stored-energy (W), volume-average toroidal rotation (Ω Φ ), and safety factor profile (q) at different spatial locations) have been integrated in this work with event-triggered neoclassical tearing-mode (NTM) suppression controllers by combining them into an architecture augmented by a supervisory and exception handling (S&EH) system and an actuator management (AM) system. Here, the AM system, which enables the integration of competing controllers, solves in real time a nonlinear optimization problem that takes into account the high-level control priorities dictated by the S&EH system. The resulting architecture offers a high level of integration and some of the functionalities that will be required to fulfill the advanced-control requirements anticipated for ITER. Initial simulations using COTSIM suggest that the plasma performance and its MHD stability may be improved under integrated feedback control. In addition, the integrated-control architecture has been implemented in the DIII-D plasma control system and tested experimentally for the first time ever in DIII-D in a high-q min scenario, which is a candidate for steady-state operation in ITER.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Practical benzylation of N,N -substituted ethanolamines related to chemical warfare agents for analysis and detection by Electron Ionization Gas Chromatography-Mass Spectrometry

The benzylation of three, low-molecular weight N,N-disubstituted ethanolamines related to chemical warfare agents (CWAs) to furnish derivatives with improved Gas Chromatography-Mass Spectrometry (GC-MS) profiles is described. Due to their low molecular weight and polar nature, N,N-disubstituted ethanolamines are notoriously difficult to detect by routine GC-MS analyses during Organisation for the Prohibition of Chemical Weapons (OPCW) proficiency tests (PTs), particularly in scenarios when they are present at low levels (~1-10 ppm) amidst more abundant interferences. Our studies revealed that the optimal derivatization conditions involved the treatment of the ethanolamine with benzyl bromide in the presence of an inorganic base (e.g., Na 2 CO 3 ) in dichloromethane at 55 °C for 2 hours. This optimized set of conditions were then successfully applied to the derivatization of N,N-dimethylethanolamine, N,N-diethylethanolamine and N,N-diisopropylethanolamine present separately at 1 and 10 μg/mL concentrations in a glycerol-rich matrix sample featured in the 48 th OPCW PT. The benzylated derivatives of the three ethanolamines possessed retention times long enough to clear the massive glycerol-containing matrix interferences. In conclusion, the protocol herein is introduced as an alternative method for derivatization of these CWA and pharmaceutically important species and should find broad applicability in laboratories where their routine forensic analysis is carried out.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Modeling the Pseudomonas Sulfur Regulome by Quantifying the Storage and Communication of Information

ABSTRACT Bacteria are not simply passive consumers of nutrients or merely steady-state systems. Rather, bacteria are active participants in their environments, collecting information from their surroundings and processing and using that information to adapt their behavior and optimize survival. The bacterial regulome is the set of physical interactions that link environmental information to the expression of genes by way of networks of sensors, transporters, signal cascades, and transcription factors. As bacteria cannot have one dedicated sensor and regulatory response system for every possible condition that they may encounter, the sensor systems must respond to a variety of overlapping stimuli and collate multiple forms of information to make “decisions” about the most appropriate response to a specific set of environmental conditions. Here, we analyze Pseudomonas fluorescens transcriptional responses to multiple sulfur nutrient sources to generate a predictive, computational model of the sulfur regulome. To model the regulome, we utilize a transmitter-channel-receiver scheme of information transfer and utilize principles from information theory to portray P. fluorescens as an informatics system. This approach enables us to exploit the well-established metrics associated with information theory to model the sulfur regulome. Our computational modeling analysis results in the accurate prediction of gene expression patterns in response to the specific sulfur nutrient environments and provides insights into the molecular mechanisms of Pseudomonas sensory capabilities and gene regulatory networks. In addition, modeling the bacterial regulome using the tools of information theory is a powerful and generalizable approach that will have multiple future applications to other bacterial regulomes. IMPORTANCE Bacteria sense and respond to their environments using a sophisticated array of sensors and regulatory networks to optimize their fitness and survival in a constantly changing environment. Understanding how these regulatory and sensory networks work will provide the capacity to predict bacterial behaviors and, potentially, to manipulate their interactions with an environment or host. Leveraging the information theory provides useful quantitative metrics for modeling the information processing capacity of bacterial regulatory networks. As our model accurately predicted gene expression profiles in a bacterial model system, we posit that the information theory-based approaches will be important to enhance our understanding of a wide variety of bacterial regulomes and our ability to engineer bacterial sensory and regulatory networks.

Larsen, Peter E.↗

Control of the Plasma-Material Interface for Long Pulse Optimization in the Experimental Advanced Superconducting Tokamak (EAST) (Final Report)

This project involved a collaborative effort, led by Dr. Rajesh Maingi of Princeton Plasma Physics Laboratory, to understand and control the plasma-material interface to improve long pulse discharge control and performance in the EAST devices. The focus is on long pulse recycling control and optimization, which can be challenging because of their broad range of materials used for plasma-facing components (PFC) and wall conditioning techniques. The purpose of the EAST device is to demonstrate long-pulse, stable, high performance plasma operation, providing a test-bed for key physics and technology issues for next step devices. As part of these tests, EAST has deployed carbon for the lower divertor PFC, tungsten for the upper divertor, and molybdenum for the main wall. In addition wall coatings are deployed for long pulse recycling control: lithium (Li) via several delivery tools, boronization, and recently also siliconization; for example, in 2013, a layer of SiC was deposited on all of the graphite tiles. Oxygen is also present at trace levels, making for a complex mix of materials and plasma-materials interactions (PMI). This mix of materials and the limited durability of wall coatings, coupled to partially optimized cryo-pumping, lead to evolution of the recycling off the PFCs, which restricts the duration of stationary, high performance, long pulse discharges. Comparing the wall conditioning techniques, Li enables the highest energy confinement and lowest recycling for the longest duration, while also suppressing ELMs in certain discharges. More specifically, research activities at the University of Tennessee focused on heat flux profile measurements in EAST, modeling the surface response, including the bonding energetics and chemical interactions between Li with carbon, tungsten, hydrogen and impurities, in addition to post situ experimental characterization and analysis of the divertor plasma facing components in EAST. This final report describes the overall progress within each of these tasks at the University of Tennessee within the project.

36 MATERIALS SCIENCE↗

Airborne gravimetry, altimetry, and GPS navigation errors

Proper interpretation of airborne gravimetry and altimetry requires good knowledge of aircraft trajectory. Recent advances in precise navigation with differential GPS have made it possible to measure gravity from the air with accuracies of a few milligals, and to obtain altimeter profiles of terrain or sea surface correct to one decimeter. These developments are opening otherwise inaccessible regions to detailed geophysical mapping. Navigation with GPS presents some problems that grow worse with increasing distance from a fixed receiver: the effect of errors in tropospheric refraction correction, GPS ephemerides, and the coordinates of the fixed receivers. Ionospheric refraction and orbit error complicate ambiguity resolution. Optimal navigation should treat all error sources as unknowns, together with the instantaneous vehicle position. To do so, fast and reliable numerical techniques are needed: efficient and stable Kalman filter-smoother algorithms, together with data compression and, sometimes, the use of simplified dynamics.

Colombo, Oscar L.↗

Determining Spacecraft Reaction Wheel Friction Parameters

Software was developed to characterize the drag in each of the Cassini spacecraft's Reaction Wheel Assemblies (RWAs) to determine the RWA friction parameters. This tool measures the drag torque of RWAs for not only the high spin rates (greater than 250 RPM), but also the low spin rates (less than 250 RPM) where there is a lack of an elastohydrodynamic boundary layer in the bearings. RWA rate and drag torque profiles as functions of time are collected via telemetry once every 4 seconds and once every 8 seconds, respectively. Intermediate processing steps single-out the coast-down regions. A nonlinear model for the drag torque as a function of RWA spin rate is incorporated in order to characterize the low spin rate regime. The tool then uses a nonlinear parameter optimization algorithm based on the Nelder-Mead simplex method to determine the viscous coefficient, the Dahl friction, and the two parameters that account for the low spin-rate behavior.

Sarani, Siamak↗

Efficient prediction of concentrating solar power plant productivity using data clustering

Concentrating solar power (CSP) plants convert solar energy to electricity and can be deployed with a thermal storage capability to shift electricity generation from time periods with available solar resource to those with high electricity demand or electricity price. Rigorous optimization of plant design and operational strategies can improve the market-competitiveness and commercial viability; however, such optimization may require hundreds of annual performance simulations, each of which can be computationally expensive when including considerations such as optimization of dispatch scheduling, sub-hourly time resolution, and stochastic effects due to uncertain weather or electricity price forecasts. This paper proposes a methodology to reduce the computational burden associated with simulation of electricity yield and revenue for CSP plants over a single- or multi-year period. Data-clustering techniques are employed to select a small number of limited-duration time blocks for simulation that, when appropriately weighted, can reproduce generation and revenue over a single year or within each year of a multi-year period. After selection of appropriate data features and weighting factors defining similarity between time-series profiles, the methodology captured annual revenue within 2.3%, 1.7%, or 1.2% using simulation of 10, 30, or 50 three-day exemplar time blocks, respectively, for each of three single-year location/weather/market scenarios and five plant configurations ranging from low to high solar multiple and storage capacity. When applied to multi-year datasets, the proposed methodology can capture inter-year variability that is unavailable from typical meteorological year (TMY) datasets while simultaneously requiring simulation of less than a single year of data.

14 SOLAR ENERGY↗

The OMPS Limb Profiler Instrument: Two-Dimensional Retrieval Algorithm

The upcoming Ozone Mapper and Profiler Suite (OMPS), which will be launched on the NPOESS Preparatory Project (NPP) platform in early 2011, will continue monitoring the global distribution of the Earth's middle atmosphere ozone and aerosol. OMPS is composed of three instruments, namely the Total Column Mapper (heritage: TOMS, OMI), the Nadir Profiler (heritage: SBUV) and the Limb Profiler (heritage: SOLSE/LORE, OSIRIS, SCIAMACHY, SAGE III). The ultimate goal of the mission is to better understand and quantify the rate of stratospheric ozone recovery. The focus of the paper will be on the Limb Profiler (LP) instrument. The LP instrument will measure the Earth's limb radiance (which is due to the scattering of solar photons by air molecules, aerosol and Earth surface) in the ultra-violet (UV), visible and near infrared, from 285 to 1000 nm. The LP simultaneously images the whole vertical extent of the Earth's limb through three vertical slits, each covering a vertical tangent height range of 100 km and each horizontally spaced by 250 km in the cross-track direction. Measurements are made every 19 seconds along the orbit track, which corresponds to a distance of about 150km. Several data analysis tools are presently being constructed and tested to retrieve ozone and aerosol vertical distribution from limb radiance measurements. The primary NASA algorithm is based on earlier algorithms developed for the SOLSE/LORE and SAGE III limb scatter missions. All the existing retrieval algorithms rely on a spherical symmetry assumption for the atmosphere structure. While this assumption is reasonable in most of the stratosphere, it is no longer valid in regions of prime scientific interest, such as polar vortex and UTLS regions. The paper will describe a two-dimensional retrieval algorithm whereby the ozone distribution is simultaneously retrieved vertically and horizontally for a whole orbit. The retrieval code relies on (1) a forward 2D Radiative Transfer code (to model limb radiances within a non-uniform atmosphere and evaluate 2D analytical partial derivatives) and (2) an optimal estimator inversion routine. The algorithm uses the typically sparse nature of the kernel matrices as well as fast matrix inversion techniques to allow for fast inversion of limb data with efficient memory management (as was done for MIPAS data processing). While the method has so far only been developed in the context of Single Scatter, the paper will show how the CPU intensive Multiple Scatter modeling can be implemented using parallel CPU processing. Initial results will be presented in terms of retrieved ozone profiles and code performance.

Rault, Didier F.↗

Quantifying the impacts of agricultural management and climate change on soil organic carbon changes in the uplands of Eastern China

In order to implement optimal farming practices for increasing soil organic carbon (SOC) in agro-ecosystems, there is a need for understanding how management practices and climate change alter SOC levels. This study quantified the influence of agricultural management practices and climatic factors on SOC changes in Eastern China’s upland-crop fields in northern Jiangsu Province for the period of 2010–2039, by using the DeNitrification-DeComposition (DNDC, version 9.5) model. We utilized the currently most detailed soil database, which is at a scale of 1:50,000, containing 17,024 soil polygons derived from 983 upland soil profiles. Across all the examined scenarios of agricultural management practices, our results show that the carbon sequestration potential in the upper layer soil (0–50 cm) of the study area varied from 6.93 to 155.11 Tg C during 2010–2039, with an average rate of 59 to 1317 kg C ha-1 year-1. As a promising alternative, the combined scenario of crop residue return rate of 50% and farmyard manure incorporation rate of 50% is recommended for agricultural management practice in this region. Meanwhile, climate conditions play a significant role in the annual SOC changes as well. Air temperature increase of 2–4 °C leads to 3.41–7.51 Tg C decrease in SOC under conventional management for the entire study region. Decreasing or increasing precipitation by 20% would increase 0.57 Tg C or decrease 1.09 Tg C under the conventional management scenario, respectively. Additionally, among all the soil groups, the fluvo-aquic soils have the highest C sequestration rate in most scenarios. Our findings could be used to inform optimal agricultural management toward climate mitigation.

54 ENVIRONMENTAL SCIENCES↗

Liquid Chromatography Coupled to Refractive Index or Mass Spectrometric Detection for Metabolite Profiling in Lysate-based Cell-free Systems

Engineering cellular metabolism for targeted biosynthesis can require extensive design-build-test-learn (DBTL) cycles as the engineer works around the cell's survival requirements. Alternatively, carrying out DBTL cycles in cell-free environments can accelerate this process and alleviate concerns with host compatibility. A promising approach to cell-free metabolic engineering (CFME) leverages metabolically active crude cell extracts as platforms for biomanufacturing and for rapidly discovering and prototyping modified proteins and pathways. Realizing these capabilities and optimizing CFME performance requires methods to characterize the metabolome of lysate-based cell-free platforms. That is, analytical tools are necessary for monitoring improvements in targeted metabolite conversions and in elucidating alterations to metabolite flux when manipulating lysate metabolism. In this work, metabolite analyses using high-performance liquid chromatography (HPLC) coupled with either optical or mass spectrometric detection were applied to characterize metabolite production and flux in E. coli S30 lysates. Specifically, this report describes the preparation of samples from CFME lysates for HPLC analyses using refractive index detection (RID) to quantify the generation of central metabolic intermediates and by-products in the conversion of low-cost substrates (i.e., glucose) to various high-value products. The analysis of metabolite conversion in CFME reactions fed with 13 C-labeled glucose through reversed-phase liquid chromatography coupled to tandem mass spectrometry (MS/MS), a powerful tool for characterizing specific metabolite yields and lysate metabolic flux from starting materials, is also presented. Altogether, applying these analytical methods to CFME lysate metabolism enables the advancement of these systems as alternative platforms for executing faster or novel metabolic engineering tasks.

59 BASIC BIOLOGICAL SCIENCES↗