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At least 1,765 records · Page 98

Recent Advances in the Use of TRIPOLI-4 Monte Carlo Code for Radiation Protection and Shielding Calculations - Paper 47

TRIPOLI-4 is a general purpose radiation transport code. It uses the continuous-energy Monte Carlo method to simulate neutron, photon, electron and positron transport in three-dimensional geometries. The main application areas of TRIPOLI-4 code include radiation protection and shielding, fission reactor physics, nuclear criticality safety, fusion reactor design, and nuclear instrumentation. For the radiation protection and shielding calculations with TRIPOLI-4 code, miscellaneous radiation sources options, various variance reduction options, and many useful tally options are available. Perturbation calculations on material densities and nuclide concentrations are routinely used in radiation protection applications. Parallel calculations with TRIPOLI-4 are also easy to perform with a PC under the linux/unix OS. To help the users to get the feedback from their test runs during the input data preparation and adjustment and to analyze the intermediate and final results from their production runs, several user-interface tools have been introduced. By using some application cases in the fields of radiation shielding, radiation dosimetry, and gamma spectrometry, this paper summarizes and demonstrates some essential improvements and possibilities in the use of TRIPOLI-4 code on fixed source calculations. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

An Update on Improvements to NiCE Support for PROTEUS

The Department of Energy Office of Nuclear Energy's Nuclear Energy Advanced Modeling and Simulation (NEAMS) program has supported the development of the NEAMS Integrated Computational Environment (NiCE), a modeling and simulation workflow environment that provides services and plugins to facilitate tasks such as code execution, model input construction, visualization, and data analysis. This report details the development of workflows for the reactor core neutronics application, PROTEUS. This advanced neutronics application (primarily developed at Argonne National Laboratory) aims to improve nuclear reactor design and analysis by providing an extensible and massively parallel, finite-element solver for current and advanced reactor fuel neutronics modeling. The integration of PROTEUS-specific tools into NiCE is intended to make the advanced capabilities that PROTEUS provides more accessible to the nuclear energy research and development community. This report will detail the work done to improve existing PROTEUS workflow support in NiCE. We will demonstrate and discuss these improvements, including the development of flexible IO services, an improved interface for input generation, and the addition of advanced Fortran development tools natively in the platform.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

CROCUS Dual Polarization Ceilometer Data at Northeastern Illinois University Rooftop

This dataset is from the Department of Energy Office of Science funded project, CROCUS Urban Integrated Field Laboratory (https://crocus-urban.org/). The dual-polarization ceilometer (Vaisala CL61) is an autonomous lidar system operating at 910 nm wavelength, providing valuable measurements for understanding atmospheric boundary layer evolution, air quality, and cloud-aerosol interactions. The CL61 measures the backscattered signal intensity alternating between parallel- and cross-polarization signals. The unique depolarization measurement capability improves discrimination between different particle types, such as liquid droplets, ice crystals, and aerosols. The depolarization is highly dependent on the scatterer shape and orientation (spherical vs non-spherical particles), with the linear depolarization ratio providing a measure of dominant backscatter signal component from atmospheric particles at various heights, essentially allowing discrimination between liquid and solid particles. With its efficient optical system, CL61’s improved signal-to-noise ratio compared to traditional ceilometers allows studying detailed vertical profiles of aerosols and clouds up to 15 km height.Datasets are stored in a netCDF data format, and we we encourage users to make use of the associated toolkits available from Unidata (https://www.unidata.ucar.edu/software/netcdf/), Project Pythia (https://foundations.projectpythia.org/core/data-formats/netcdf-cf.html), and our “Instrument Cookbooks” (https://crocus-urban.github.io/instrument-cookbooks) for more information on how to process the metadata-rich datasets.

54 ENVIRONMENTAL SCIENCES↗

Runtime Scheduling Policies for Distributed Graph Algorithms

In this paper we explore scheduling and runtime system support for unordered distributed graph computations that rely on optimistic (speculative) execution. Performance of such algorithms is impacted by two competing trends: the higher degree of parallelism enabled by optimistic execution in turn requires substantial runtime support. To address the potentially high overhead and scheduling complexity introduced by the runtime, we investigate customizable scheduling policies that augment the scheduler of the underlying runtime to adapt it to a specific graph application. We present several implementations of Distributed Control (DC), a data-driven unordered approach with work prioritization and demonstrate that customizable scheduling policies result in the most efficient implementation, outperforming the well-known -stepping Single-Source Shortest Paths (SSSP) and Jones-Plassmann vertex-coloring algorithms. We apply two scheduling techniques, flow control and adaptive frequency of network progress, which allow application-level control over the balance of domain work and the runtime work. Experimental results show the benefit of such application-aware scheduling for irregular distributed graph algorithms.

Firoz, Jesun S.↗

Custom Accessors: Enabling Scalable Data Ingestion, (Re-)Organization, and Analysis on Distributed Systems

The emerging class of high velocity and high volume data analytic workflows comprise interwoven data ingestion, organization, and processing stages, with ingestion and organization steps often contributing comparable or even higher computational costs than actual processing steps. Since complex workflows consist of a variety of phases that view and use data differently, being able to construct efficient, scalable, distributed data structures (arrays, vectors, sets, maps, and multi-maps) is essential and requires custom methods to extend and shrink containers, analyze and position data, and, maintain globallyconsistent meta-data. In this paper, we propose a novel datastructure access paradigm based on the concept of Accessors. At a high level, accessors are customizable callable objects that can modify the behavior of insert, read, update, and delete operations for distributed containers while preserving atomicity guarantees. Accessors provide a very clean and natural way to implement a variety of programming patterns, e.g., conditional insertion/deletion and cascading computations, which would be otherwise hard (or even impossible) to express in parallel and distributed settings without using locks. We demonstrate the practicality and usefulness of our approach with two representative use cases and study the performance of these applications on a distributed High-Performance Computing system. Our analysis highlights that our proposed abstraction allows for an effective overlapping and concurrent execution of different workflow steps (e.g., data ingestion and analysis), which in a conventional analytics pipeline would execute sequentially, contributing cumulatively to the overall latency.

Castellana, Vito G. [BATTELLE (PACIFIC NW LAB)] (O↗

High-Pressure Structural Response of an Insensitive Energetic Crystal: Dihydroxylammonium 5,5'-Bistetrazole-1,1'-diolate (TKX-50)

The structural response of a novel, insensitive energetic crystal—dihydroxylammonium 5,5'-bistetrazole-1,1'-diolate (TKX-50)—was examined under high pressure. Using synchrotron single-crystal X-ray diffraction measurements, details of molecular, intermolecular, and crystal changes were determined to ~10 GPa to understand its structural stability. The experimental results showed that TKX-50 exhibits highly anisotropic compression and significantly lower volume compressibility than currently known energetic crystals. These results are found to be in general agreement with our previous predictions from the DFT calculations. Additionally, the experimental data revealed anomalous compression—an expansion of the unit cell along the a axis (negative linear compressibility, NLC) upon compression to ~3 GPa. The structural analyses demonstrated that this unusual effect, the first such observation in an energetic crystal, is a consequence of the highly anisotropic response of 3D motifs, comprised of two parallel anions [(C 2 N 8 O 2 ) 2– ] linked with two cations [(NH 3 OH) + ] through four strong hydrogen bonds. The present results demonstrate that the structural stability of TKX-50 is controlled by the strong and highly anisotropic intermolecular interactions, and these may contribute to its shock insensitivity.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Visualizing Hierarchical Performance Profiles of Parallel Codes Using CallFlow

Calling context trees (CCTs) couple performance metrics with call paths, helping understand the execution and performance of parallel programs. To identify performance bottlenecks, programmers and performance analysts visually explore CCTs to form and validate hypotheses regarding degraded performance. However, due to the complexity of parallel programs, existing visual representations do not scale to applications running on a large number of processors. In this work, we present CallFlow, an interactive visual analysis tool that provides a high-level overview of CCTs together with semantic refinement operations to progressively explore CCTs. Using a flow-based metaphor, we visualize a CCT by treating execution time as a resource spent during the call chain, and demonstrate the effectiveness of our design with case studies on large-scale, production simulation codes.

97 MATHEMATICS AND COMPUTING↗

Integrating Flow Imaging Analysis and Single-Particle ICP-TOFMS for Comprehensive Micro- and Nanoplastic Characterization

Flow imaging analysis (FIA), provides composition-agnostic morphological characterization. These measurements of particle size and shape are valuable to mass-based analysis, such as single particle inductively coupled plasma time-of-flight mass spectrometry (sp-ICP-TOFMS), which provides quantitative data on elements within particles. Using these two methods together enables informed use of geometric assumptions required by sp-ICP-TOFMS, as particle mass is typically converted to a particle diameter using assumed-spherical geometry. To validate this concept, parallel measurements to determine particle diameters were performed by FIA and sp-ICP-TOFMS on four particle suspensions: 300 nm polystyrene Eu-doped nanoparticles, 1 μm Fe-rich beads, 3 μm four element calibration polystyrene beads and 5 μm polystyrene beads. The Fe-particles obtained the highest percent difference from the manufacturer’s nominal diameter, as the mean diameter obtained by FIA was overestimated by 21% and sp-ICP-TOFMS underestimated the mean diameter by 20.7%. Two types of particles were selected to test the effect of varying the particle number concentrations (PNC) on sizing accuracy, and both methods accurately sized each particle population at the PNC expected. Single particle analysis of carbon has continued to be a popular research topic, with direct applications to environmental pollutants in terms of nano- and micro- plastics. Real-world plastic particles were studied, and FIA’s measured circularity values demonstrated that the particles deviated from spherical geometries, therefore sp-ICP-TOFMS data should be interpreted as mass-based rather than size-based. Combining these techniques enables improved interpretation of particle populations and evaluation of particle sizes.

Szakas, Sarah [ORNL] (ORCID:0000000241332197)↗

Moment representation in the lattice Boltzmann method on massively parallel hardware

The widely-used lattice Boltzmann method (LBM) for computational fluid dynamics is highly scalable, but also significantly memory bandwidth-bound on current architectures. This paper presents a new regularized LBM implementation that reduces the memory footprint by only storing macroscopic, moment-based data. We show that the amount of data that must be stored in memory during a simulation is reduced by up to 47%. We also present a technique for cache-aware data re-utilization and show that optimizing cache utilization to limit data motion results in a similar improvement in time to solution. These new algorithms are implemented in the hemodynamics solver HARVEY and demonstrated using both idealized and realistic biological geometries. We develop a performance model for the moment representation algorithm and evaluate the performance on Summit.

Vardhan, Madhurima↗

Near-continuum, hypersonic oxygen flow over a double cone simulated by direct simulation Monte Carlo informed from quantum chemistry

A large-scale, fully resolved direct simulation Monte Carlo (DSMC) computation of a non-equilibrium, reactive flow of pure oxygen over a double cone is presented. Under the simulated near-continuum conditions, the computational demands are shown to be significant because of the wide range of length scales that must be resolved. Therefore, robust grid adaption capabilities and efficient parallelization of the Stochastic PArallel Rarefied-gas Time-accurate Analyzer (SPARTA) code that is utilized in this work are essential. The thermochemical and transport collision models were selected for efficiency and simplicity. First-principles data, obtained from the highly accurate direct molecular simulation method, were used to inform the collision models’ parameters. Importantly, because SPARTA implements molecular collision models using collision-specific energies, the resulting macroscopic relaxation rates were evaluated a posteriori via zero-dimensional heat bath simulations. The comparisons of surface properties, namely heat flux and pressure, show very close agreement with previous computational fluid dynamics (CFD) results. Differences with the measurements were found to be similar to the CFD simulations. The unresolved discrepancy with the measurements could be due to inconsistent free stream conditions with the actual experimental data or missing physical phenomena altogether, for example atomic and molecular oxygen electronically excited states, three-dimensional effects, or more complex gas–surface interactions. As shown in this work, the advantages of obtaining a DSMC particle solution for these flows reside in the method's ability to be directly informed from first principles and to seamlessly describe internal energy non-equilibrium for all modes. With the advent of exascale computing and beyond, particle methods will be an increasingly important tool to verify the validity of physical assumptions in reduced-order models via fully resolved, experimental-scale simulations, down to the level of molecular-level distributions.

Mechanics↗

Differentiating Thermal Conductances at Semiconductor Nanocrystal/Ligand and Ligand/Solvent Interfaces in Colloidal Suspensions

Infrared-pump, electronic-probe (IPEP) spectroscopy is used to measure heat flow into and out of CdSe nanocrystals suspended in an organic solvent, where the surface ligands are initially excited with an infrared pump pulse. Subsequently, the heat is transferred from the excited ligands to the nanocrystals and in parallel to the solvent. Parallel heat transfer in opposite directions uniquely enables us to differentiate the thermal conductances at the nanocrystal/ligand and ligand/solvent interfaces. Using a novel solution to the heat diffusion equation, we fit the IPEP data to find that the nanocrystal/ligand conductances range from 88 to 135 MW m –2 K –1 and are approximately 1 order of magnitude higher than the ligand/solvent conductances, which range from 7 to 26 MW m –2 K –1 . Transient nonequilibrium molecular dynamics (MD) simulations of nanocrystal suspensions agree with IPEP data and show that ligands bound to the nanocrystal by bidentate bonds have more than twice the per-ligand conductance as those bound by monodentate bonds.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Whistler wave generation by anisotropic tail electrons during asymmetric magnetic reconnection in space and laboratory

Whistler wave generation near the magnetospheric separatrix during reconnection at the dayside magnetopause is studied with data from the Magnetospheric Multiscale (MMS) mission. The dispersion relation of the whistler mode is measured for the first time near the reconnection region in space, which shows that whistler waves propagate nearly parallel to the magnetic field line. A linear analysis indicates that the whistler waves are generated by temperature anisotropy in the electron tail population. This is caused by loss of electrons with a high velocity parallel to the magnetic field to the exhaust region. Here, there is a positive correlation between activities of whistler waves and the lower–hybrid drift instability (LHDI) both in laboratory and space, indicating the enhanced transport by LHDI may be responsible for the loss of electrons with a high parallel velocity.

79 ASTRONOMY AND ASTROPHYSICS↗

Partitioning and Communication Strategies for Sparse Non-negative Matrix Factorization

Non-negative matrix factorization (NMF), the problem of finding two non-negative low-rank factors whose product approximates an input matrix, is a useful tool for many data mining and scientific applications such as topic modeling in text mining and unmixing in microscopy. In this paper, we focus on scaling algorithms for NMF to very large sparse datasets and massively parallel machines by employing effective algorithms, communication patterns, and partitioning schemes that leverage the sparsity of the input matrix. We consider two previous works developed for related problems, one that uses a fine-grained partitioning strategy using a point-to-point communication pattern and one that uses a Cartesian, or checkerboard, partitioning strategy using a collective-based communication pattern. We show that a combination of the previous approaches balances the demands of the various computations within NMF algorithms and achieves high efficiency and scalability. From the experiments, we see that our proposed strategy runs up to 10x faster than the state of the art on real-world datasets.

Kaya, Oguz↗

Whistler wave generation by anisotropic tail electrons during asymmetric magnetic reconnection in space and laboratory

Whistler wave generation near the magnetospheric separatrix during reconnection at the dayside magnetopause is studied with data from the Magnetospheric Multiscale (MMS) mission. The dispersion relation of the whistler mode is measured for the first time near the reconnection region in space, which shows that whistler waves propagate nearly parallel to the magnetic field line. A linear analysis indicates that the whistler waves are generated by temperature anisotropy in the electron tail population. This is caused by loss of electrons with a high velocity parallel to the magnetic field to the exhaust region. There is a positive correlation between activities of whistler waves and the lower-hybrid drift instability (LHDI) both in laboratory and space, indicating the enhanced transport by LHDI may be responsible for the loss of electrons with a high parallel velocity.

Dispersion relation↗

kynema-sgf [SWR-20-85]

Kynema-SGF (formerly AMR-Wind), wherein SGF stands for structured-grid fluid dynamics, is a massively parallel, block-structured adaptive-mesh, incompressible flow solver. The codebase was initiated in 2019 from incflo. The solver is built on top of the AMReX library. AMReX library provides the mesh data structures, mesh adaptivity, as well as the linear solvers used for solving the governing equations. Kynema-SGF is actively developed and maintained by a dedicated multi-institutional team from Lawrence Berkeley National Laboratory, National Laboratory of the Rockies, and Sandia National Laboratories. The primary applications for Kynema-SGF are: performing large-eddy simulations (LES) of atmospheric boundary layer (ABL) flows, simulating wind farm turbine-wake interactions using actuator disk or actuator line models for turbines, and as a background solver when coupled with a near-body solver (e.g., Kynema-UGF) with overset methodology to perform blade-resolved simulations of multiple wind turbines within a wind farm. For offshore applications, the ability to model the air-sea interaction effects and its impact on the ABL characteristics is another focus for the code development effort. As with other codes in the Kynema ecosystem, Kynema-SGF shares the following objectives: *an open, well-documented implementation of the state-of-the-art computational models for modeling wind farm flow physics at various fidelities that are backed by a comprehensive verification and validation (V&V) process; *be capable of performing the highest-fidelity simulations of flow fields within wind farms; and *be able to leverage the high-performance leadership class computing facilities available at DOE national laboratories.

Ananthan, Shreyas↗

Exascale Programming Approaches for Accelerated Climate Modeling for Energy

The Accelerated Climate Modeling for Energy (ACME) program is a leading-edge climate and Earth system model designed to address the U.S. Department of Energy (DOE) mission needs. The ACME project involves collaboration between seven National Laboratories, the National Center for Atmospheric Research, four academic institutions, and one private-sector company. The ACME project funds ongoing efforts to ensure the model continues to make efficient use of DOE Leadership Computing Facilities (LCFs) in order to best address the three driving grand challenge science questions:Water cycle: How will more realistic portrayals of features important to the water cycle (resolution, clouds, aerosols, snowpack, river routing, land use) affect river flow and associated freshwater supplies at the watershed scale?Cryosphere systems: Could a dynamical instability in the Antarctic ice sheet be triggered within the next 40 years?Biogeochemistry: What are the contributions and feedbacks from natural and managed systems to current greenhouse gas fluxes, and how will those factors and associated fluxes evolve in the future?

Norman, Matthew↗

Characterizing Quantum Devices Using Model Selection

Quantum information processors are a new kind of computing device with the potential to solve certain problems very quickly. The quantum bits, or "ʺqubits,"ʺ that enable such processors are being developed at Sandia and around the world. In support of this effort, Sandia’s Center for Computing Research is designing methods and algorithms to characterize and debug the behavior of experimental qubits, such as trapped ions and electron spins in silicon. This is a challenge, because qubits are hard to characterize for exactly the same reason that they are powerful. Their behavior (and misbehavior) is far richer and more complicated than that of classical bits! The most reliable models of quantum errors have infinitely many parameters, and we never have enough data to fit all of them. Until now, researchers simply threw out most of these parameters resulting in a crude approximation that makes the problem tractable, but isn’t reliable or accurate enough for Sandia’s experimental work. Our new techniques use statistical model selection to identify “significant” error parameters on the fly, applying a data-­‐‑driven information criterion to choose a Hilbert space that describes the data well without overfitting. To find a reliable criterion, we needed to evaluate many candidates on an enormous corpus of test cases–for which we relied on Red Sky’s ability to run parallel Monte Carlo simulations. Our computations demonstrate how classic model selection methods have to be modified for quantum devices. These results will enable new techniques that identify the effective dimension of as-­‐‑built qubits on the fly, and then use this information to reliably pin down error behaviors and produce successively better and more useful qubits. This project highlights the close and productive relationship between Sandia and the University of New Mexico, where Travis Scholten is working towards a Ph.D. in physics. Both the intellectual environment of UNM and the high-­‐‑powered supercomputing available at Sandia were critical ingredients in achieving our research goals.

97 MATHEMATICS AND COMPUTING↗

An Integrated Approach to Parameter Learning in Infinite-Dimensional Space

The availability of sophisticated modern physics codes has greatly extended the ability of domain scientists to understand the processes underlying their observations of complicated processes, but it has also introduced the curse of dimensionality via the many user-set parameters available to tune. Many of these parameters are naturally expressed as functional data, such as initial temperature distributions, equations of state, and controls. Thus, when attempting to find parameters that match observed data, being able to navigate parameter-space becomes highly non-trivial, especially considering that accurate simulations can be expensive both in terms of time and money. Existing solutions include batch-parallel simulations, high-dimensional, derivative-free optimization, and expert guessing, all of which make some contribution to solving the problem but do not completely resolve the issue. In this work, we explore the possibility of coupling together all three of the techniques just described by designing user-guided, batch-parallel optimization schemes. Our motivating example is a neutron diffusion partial differential equation where the time-varying multiplication factor serves as the unknown control parameter to be learned. We find that a simple, batch-parallelizable, random-walk scheme is able to make some progress on the problem but does not by itself produce satisfactory results. After reducing the dimensionality of the problem using functional principal component analysis (fPCA), we are able to track the progress of the solver in a visually simple way as well as viewing the associated principle components. This allows a human to make reasonable guesses about which points in the state space the random walker should try next. Thus, by combining the random walker's ability to find descent directions with the human's understanding of the underlying physics, it is possible to use expensive simulations more efficiently and more quickly arrive at the desired parameter set.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗