Search NASA⌕ Search

SEARCH · Search NASA

Results for “structural modification”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,765 records · Page 98
All sourcesNASA NTRSDOE OSTI
DOE OSTI2018

The Influence of Pr and Nd Substitution on Hydrogen Storage Properties of Mechanically Alloyed (La,Mg){sub 2}Ni{sub 7}-Type Alloys

The (La,Mg){sub 2}Ni{sub 7}-type alloys are candidates for hydrogen storage materials. In this study, mechanical alloying with subsequent annealing under the argon atmosphere at 1123 K for 0.5 h is applied to produce La{sub 1.5−x}Pr{sub x}Mg{sub 0.5}Ni{sub 7} and La{sub 1.5−x}Nd{sub x}Mg{sub 0.5}Ni{sub 7} alloys (x = 0, 0.25, 0.5, 1). A shaker-type ball mill is used in the study. The objective of the present study is to investigate the influence of the amount of Pr or Nd in the La-Mg-Ni alloy on the electrochemical, hydrogenation and dehydrogenation properties of (La,Mg){sub 2}Ni{sub 7}-type materials. The x-ray diffraction analysis reveals the formation of multi-phase structure materials. The obtained alloys were studied by a conventional Sievert’s type apparatus at 303 K. It has been observed that a chemical modification by Pr and Nd can affect the kinetics of the hydrogen absorption process and the maximum hydrogen storage capacity. Moreover, the stability of the electrochemical discharge capacity during cyclic work of the (La,Mg){sub 2}Ni{sub 7}-type alloys is improved by a substitution with the La by Pr or Nd atoms.

36 MATERIALS SCIENCE↗
DOE OSTI2022

OC6 phase I: Improvements to the OpenFAST predictions of nonlinear, low-frequency responses of a floating offshore wind turbine platform

We report in the OC5 and OC6 projects, the authors observed a persistent underprediction of the nonlinear, low-frequency responses of an offshore wind semisubmersible with many mid-fidelity engineering models, including the OpenFAST tool developed by the National Renewable Energy Laboratory. Both the low-frequency wave excitation in surge and pitch and the resulting resonance motions were severely underpredicted. In response, we developed several modifications to the OpenFAST model from the OC5/6 projects to improve the predictions of the low-frequency wave loads and responses. All modifications are in the modeling of the viscous drag forces. Efforts were made to provide physical justifications to the changes and to limit the number of additional parameters requiring tuning, so that the modified model can be applied to other floating wind systems. With the proposed modifications, the predictions of the low-frequency surge and pitch wave loads on a fixed floater and the resonance responses of a floating structure are both significantly improved with a single set of model coefficients, which leads to good agreement with the measurements from the OC6 wave-basin experimental campaign.

17 WIND ENERGY↗
DOE OSTI2020

Rapid and Simultaneous Characterization of Drug Conjugation in Heavy and Light Chains of a Monoclonal Antibody Revealed by High-Resolution Ion Mobility Separations in SLIM

Antibody-drug conjugates (ADCs) have recently gained traction in the biomedical community due to their promise for human therapeutics and an alternative to chemotherapy for cancer. Crucial metrics for ADC efficacy, safety, and selectivity are their drug-antibody ratios (DARs). However, DAR characterization (i.e., determining the average number of conjugated drugs on the antibody) through analytical methods remains challenging due to the heterogeneity of drug conjugation as well as the numerous post-translational modifications possible in the monoclonal antibody. In this work, we report on the use of high-resolution ion mobility spectrometry separations in our structures for lossless ion manipulations coupled to mass spectrometry (SLIM IMS-MS) platform for the rapid and simultaneous characterization of the drug load profile (i.e., stoichiometric distribution of the number of conjugated drugs present on the mAb), determination of the weighted average DAR in both the heavy and light chains of a model antibody-drug conjugate, and calculation of the overall DAR of the ADC. After chemical reduction of the ADC and a subsequent 31.5 meter SLIM IMS separation the various drug bound antibody species could be well resolved for both chains. Furthermore, we also show that higher resolution separations were possible with SLIM IMS as compared to ones performed on a commercially available (~1 meter) drift tube IMS-MS platform. Interestingly, additional gas-phase substructures become evident with longer path length SLIM IMS, potentially providing insight related to how drug conjugation may alter the structural properties of a monoclonal antibody and thus affect its overall potency and/or selectivity for a given antigen. We expect high-resolution SLIM IMS separations will augment the existing toolbox for ADC characterization, particularly for structural confirmation to enable the rapid optimization of DAR for a given ADC and thus better understand its potential toxicity and potency.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2018

Capturing Phase Behavior of Ternary Lipid Mixtures with a Refined Martini Coarse-Grained Force Field

Whether lipid rafts are present in the membranes of living cells remains hotly disputed despite their incontrovertible existence in liposomes at 298 K. In attempts to resolve this debate, molecular dynamics (MD) simulations have been extensively used to study lipid phase separation at high resolution. However, computation has been of limited utility in this respect because the experimental distributions of phases in lamellar lipid mixtures are poorly reproduced by simulations. In particular, all-atom (AA) approaches suffer from restrictions on accessible time scales and system sizes whereas the more efficient coarse-grained (CG) force fields remain insufficiently accurate to achieve correspondence with experiment. We refine the CG Martini parameters for the high- and low-melting temperature (T m ) lipids 1,2-dipalmitoyl-sn-glycero-3-phosphatidylcholine (DPPC) and 1,2-dioleoyl-sn-glycero-3-phosphatidylcholine (DOPC). Our approach involves the modification of bonded Martini parameters based on fitting to atomistic simulations conducted with the CHARMM36 lipid force field. The resulting CG parameters reproduce experimental structural and thermodynamic properties of homogeneous lipid membranes while concurrently improving simulation fidelity to experimental phase diagrams of DPPC, DOPC, and cholesterol lipid mixtures. Importantly, the refined parameters provide much better phase accuracy for regions near the critical point that mimic the lipid concentrations under physiological conditions.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Potent Noncovalent Inhibitors of the Main Protease of SARS-CoV-2 from Molecular Sculpting of the Drug Perampanel Guided by Free Energy Perturbation Calculations

Starting from our previous finding of 14 known drugs as inhibitors of the main protease (M pro ) of SARS-CoV-2, the virus responsible for COVID-19, we have redesigned the weak hit perampanel to yield multiple noncovalent, nonpeptidic inhibitors with ca. 20 nM IC 50 values in a kinetic assay. Free-energy perturbation (FEP) calculations for M pro -ligand complexes provided valuable guidance on beneficial modifications that rapidly delivered the potent analogues. The design efforts were confirmed and augmented by determination of high-resolution X-ray crystal structures for five analogues bound to M pro . Results of cell-based antiviral assays further demonstrated the potential of the compounds for treatment of COVID-19. In addition to the possible therapeutic significance, the work clearly demonstrates the power of computational chemistry for drug discovery, especially FEP-guided lead optimization.

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2024

Restricted Rotational Flexibility of the C5α-Methyl-Substituted Carbapenem NA-1-157 Leads to Potent Inhibition of the GES-5 Carbapenemase

Carbapenem antibiotics are used as a last-resort treatment for infections caused by multidrug-resistant bacteria. The wide spread of carbapenemases in Gram-negative bacteria has severely compromised the utility of these drugs and represents a serious public health threat. To combat carbapenemase-mediated resistance, new antimicrobials and inhibitors of these enzymes are urgently needed. Here, we describe the interaction of the atypically C5α-methyl-substituted carbapenem, NA-1-157, with the GES-5 carbapenemase. MICs of this compound against Escherichia coli, Klebsiella pneumoniae, and Acinetobacter baumannii producing the enzyme were reduced 4–16-fold when compared to MICs of the commercial carbapenems, reaching clinically sensitive breakpoints. When NA-1-157 was combined with meropenem, a strong synergistic effect was observed. Kinetic and ESI-LC/MS studies demonstrated that NA-1-157 is a potent inhibitor of GES-5, with a high inactivation efficiency of (2.9 ± 0.9) × 105 M –1 s –1 . Acylation of GES-5 by NA-1-157 was biphasic, with the fast phase completing within seconds, and the slow phase taking several hours and likely proceeding through a reversible tetrahedral intermediate. Deacylation was extremely slow (k 3 = (2.4 ± 0.3) × 10 –7 s –1 ), resulting in a residence time of 48 ± 6 days. MD simulation of the GES-5-meropenem and GES-5-NA-1-157 acyl-enzyme complexes revealed that the C5α-methyl group in NA-1- 157 sterically restricts rotation of the 6α-hydroxyethyl group preventing ingress of the deacylating water into the vicinity of the scissile bond of the acyl-enzyme intermediate. Furthermore, these data demonstrate that NA-1-157 is a potent irreversible inhibitor of the GES-5 carbapenemase.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2017

Constructing “Designer Atoms” via Resonant Graphene-Induced Lamb Shifts

The properties of an electron in an atom or molecule are not fixed; rather they are a function of the optical environment of the emitter. Not only is the spontaneous emission a function of the optical environment, but also the underlying wave functions and energy levels, which are modified by the potential induced by quantum fluctuations of the electromagnetic field. In free space, this modification of atomic levels and wave functions is very weak and generally hard to observe due to the prevalence of other perturbations like fine structure. Here in this paper, we explore the possibility of highly tailorable electronic structure by exploiting large Lamb shifts in tunable electromagnetic environments such as graphene, whose optical properties are dynamically controlled via doping. The Fermi energy can be chosen so that the Lamb shift is very weak, but it can also be chosen so that the shifts become more prominent than the fine structure of the atom and even potentially the Coulomb interaction with the nucleus. Potential implications of this idea include being able to electronically shift an unfavorable emitter structure into a favorable one, a new approach to probe near-field physics in fluorescence, and a way to access regimes of physics where vacuum fluctuations are not a weak perturbation but rather the dominant physics.

74 ATOMIC AND MOLECULAR PHYSICS↗
DOE OSTI2021

Single-component multilayered self-assembling nanoparticles presenting rationally designed glycoprotein trimers as Ebola virus vaccines

Ebola virus (EBOV) glycoprotein (GP) can be recognized by neutralizing antibodies (NAbs) and is the main target for vaccine design. Here, we first investigate the contribution of the stalk and heptad repeat 1-C (HR1 C ) regions to GP metastability. Specific stalk and HR1 C modifications in a mucin-deleted form (GPΔmuc) increase trimer yield, whereas alterations of HR1 C exert a more complex effect on thermostability. Crystal structures are determined to validate two rationally designed GPΔmuc trimers in their unliganded state. We then display a modified GPΔmuc trimer on reengineered protein nanoparticles that encapsulate a layer of locking domains (LD) and a cluster of helper T-cell epitopes. In mice and rabbits, GP trimers and nanoparticles elicit cross-ebolavirus NAbs, as well as non-NAbs that enhance pseudovirus infection. Repertoire sequencing reveals quantitative profiles of vaccine-induced B-cell responses. This study demonstrates a promising vaccine strategy for filoviruses, such as EBOV, based on GP stabilization and nanoparticle display.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2026

Limitations of probing field-induced response with STM

The kagome superconductors AV 3 Sb 5 (where A = K, Cs, Rb) exhibit intertwined density waves, unconventional superconductivity and time-reversal symmetry breaking without spin magnetism, with scanning tunnelling microscopy (STM) studies reporting, albeit not universally, magnetic-field-dependent changes in the apparent chirality of the 2 × 2 charge density wave (CDW). Related to this, Xing et al. investigated the effects of magnetic and electric fields on the 2 × 2 CDW state and the lattice structure of kagome superconductor RbV3Sb5, reporting a field-induced ~1% change in the in-plane lattice constants, concomitant with the CDW intensity modification, controlled by the field direction. Here we demonstrate how the apparent magnetic field induced lattice and CDW intensity change can be explained as a consequence of two independent experimental artifacts: a reconfiguration of atoms at the STM tip apex that alters the amplitudes of CDW modulations, and piezo creep, hysteresis and thermal drift, which artificially distort STM topographs. Here, we argue that the reported piezomagnetism could be attributed to experimental artifacts rather than an intrinsic magnetic-field-induced change of the sample.

Candelora, Christopher [Boston College, Chestnut H↗
DOE OSTI2020

Disruption of a key ligand-H-bond network drives dissociative properties in vamorolone for Duchenne muscular dystrophy treatment

Duchenne muscular dystrophy is a genetic disorder that shows chronic and progressive damage to skeletal and cardiac muscle leading to premature death. Antiinflammatory corticosteroids targeting the glucocorticoid receptor (GR) are the current standard of care but drive adverse side effects such as deleterious bone loss. Through subtle modification to a steroidal backbone, a recently developed drug, vamorolone, appears to preserve beneficial efficacy but with significantly reduced side effects. We use combined structural, biophysical, and biochemical approaches to show that loss of a receptor-ligand hydrogen bond drives these remarkable therapeutic effects. Moreover, vamorolone uniformly weakens coactivator associations but not corepressor associations, implicating partial agonism as the main driver of its dissociative properties. Additionally, we identify a critical and evolutionarily conserved intramolecular network connecting the ligand to the coregulator binding surface. Interruption of this allosteric network by vamorolone selectively reduces GR-driven transactivation while leaving transrepression intact. Our results establish a mechanistic understanding of how vamorolone reduces side effects, guiding the future design of partial agonists as selective GR modulators with an improved therapeutic index.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Understanding the lattice thermal conductivity of SrTiO 3 from an ab initio perspective

Here, we present a detailed analysis of the structure dependence of the lattice thermal conductivity of SrTiO 3 . We have used both ab initio molecular dynamic simulations and density functional theory calculations to decouple the effect of different structural distortions on the thermal conductivity. We have identified two main mechanisms for tuning the thermal conductivity when a distortion is applied. First, the modification of the acoustic-modes energy dispersion when a change in the lattice parameters is imposed and second, the low energy polar modes. In particular and counterintuitively, we have found that an increase in the angle of the oxygen octahedral rotations increases the thermal conductivity due to its coupling to these polar modes.

36 MATERIALS SCIENCE↗
DOE OSTI2020

The NtrYX Two-Component System Regulates the Bacterial Cell Envelope

ABSTRACT Activity of the NtrYX two-component system has been associated with important processes in diverse bacteria, ranging from symbiosis to nitrogen and energy metabolism. In the facultative alphaproteobacterium Rhodobacter sphaeroides , loss of the two-component system NtrYX results in increased lipid production and sensitivity to some known cell envelope-active compounds. In this study, we show that NtrYX directly controls multiple properties of the cell envelope. We find that the response regulator NtrX binds upstream of cell envelope genes, including those involved in peptidoglycan biosynthesis and modification and in cell division. We show that loss of NtrYX impacts the cellular levels of peptidoglycan precursors and lipopolysaccharide and alters cell envelope structure, increasing cell length and the thickness of the periplasm. Cell envelope function is also disrupted in the absence of NtrYX, resulting in increased outer membrane permeability. Based on the properties of R. sphaeroides cells lacking NtrYX and the target genes under direct control of this two-component system, we propose that NtrYX plays a previously undescribed, and potentially conserved, role in the assembly, structure, and function of the cell envelope in a variety of bacteria. IMPORTANCE The bacterial cell envelope provides many important functions. It protects cells from harsh environments, serves as a selective permeability barrier, houses bioenergetic functions, defines sensitivity to antibacterial agents, and plays a crucial role in biofilm formation, symbiosis, and virulence. Despite the important roles of this cellular compartment, we lack a detailed understanding of the biosynthesis and remodeling of the cell envelope. Here, we report that the R. sphaeroides two-component signaling system NtrYX is a previously undescribed regulator of cell envelope processes, providing evidence that it is directly involved in controlling transcription of genes involved in cell envelope assembly, structure, and function in this and possibly other bacteria. Thus, our data report on a newly discovered process used by bacteria to assemble and remodel the cell envelope.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

MEUMAPPS (C++ Version)

Many materials, metal alloys in particular, have features on the on micrometer or nanometer scale that have a large impact on the properties of the material. These features are known as the microstructure of the material. Understanding why and how the microstructure forms in a material is of fundamental scientific interest as well as of significant technological interest. The capability to predict microstructure evolution in a material allows the intentional design of microstructures and hence the intentional design of material properties. The phase-field method is one of the leading methods for predicting microstructure evolution. One of the most significant problems for phase-field models is their computational expense. Even limited phase-field simulations can easily require thousands of CPU core-hours to complete, which significantly limits their use. This code provides both a general framework for creating scalable, GPU-accelerated phase-field model applications as well as several applications themselves. The code is capable of using hundreds of GPUs efficiently, which greatly reduces the time required to perform simulations. The code is written with an emphasis on performance portability, that is the ability for the code to run efficiently on a number of different computing architectures without modification of the source code. The performance portability of this code is primarily enabled through the use of two libraries, Kokkos (performance portable data structures and execution patterns) and heFFTe (performance portable distributed 3D fast Fourier transforms). The code consists of a core library, applications, and tests. The core library includes shared functionality between applications. This includes interfaces with fast Fourier transform (FFT) libraries such as heFFTe, data structures based on Kokkos, file input and output capabilities, and a solver for infinitesimal strain mechanical equilibrium problems. Five applications are included in the code. The flagship application is the MEUMAPPS-SS application, which implements the Kim-Kim-Suzuki phase-field model for precipitation for an arbitrary number of phases and components in a metal alloy. Five simpler applications are also included that solve the Eshelby inclusion problem, Allen-Cahn equation, the coupled Allen-Cahn and diffusion equations, and the Cahn-Hilliard equation. The code includes two applications to solve the Cahn-Hilliard equation, one with constant-step-size first-order time integration and the second with adaptive high-order time integration.

DeWitt, Stephen [Oak Ridge National Lab. (ORNL), O↗
NASA NTRS1981

The technology development methodology for a class of large diameter spaceborne deployable antennas

The application of thermally stable graphite epoxy materials in flexure is discussed and deployment mechanism designs that are adaptable to both the proof of concept and the full scale 100 meter system with no modification to the basic concept are presented. The ground deployment test techniques and mechanisms developed for ground demonstration and evaluation of large size antenna structures are presented to illustrate the complexities involved in supporting antenna structural elements in excess of 25 meters in length.

Wade, W. D.↗
NASA NTRS1980

An experimental investigation of noise attenuating techniques for space-shuttle canisters

A model of the space shuttle thermal canister was acoustically tested to determine the amount of noise attenuation which could be derived using a simple, single-wall canister construction having rectangular shape. Acoustic testing was performed on the basic canister and with noise-attenuating design modifications. The basic canister experienced noise amplifications at 56 and 80 Hz, which are attributed to the fundamental canister acoustic mode and local panel structural resonances, respectively. The standing wave response at 56 Hz was effectively suppressed by the incorporation of a cardboard baffle midway between the canister end-caps (an additional overall noise reduction of 4 dB). The canister was next tested with 14%, 22.5% and 31% sound absorptive coverages on the interior walls. The coverage was effective between 400-3000 Hz; the maximum benefit (9 dB) occurring at 1600 Hz. Viscoelastic damping strips bonded to the canister exterior provided an additional 4 to 5 dB attenuation over much of the frequency range and has an overall reduction of about 10 dB as compared to 4.4 dB without damping. A significant reduction of the resonant effect at 80 Hz was noted.

Mirandy, L.↗
NASA NTRS1986

Controller design via structural reduced modeling by FETM

The Finite Element - Transfer Matrix (FETM) method has been developed to reduce the computations involved in analysis of structures. This widely accepted method, however, has certain limitations, and does not directly produce reduced models for control design. To overcome these shortcomings, a modification of FETM method has been developed. The modified FETM method easily produces reduced models that are tailored toward subsequent control design. Other features of this method are its ability to: (1) extract open loop frequencies and mode shapes with less computations, (2) overcome limitations of the original FETM method, and (3) simplify the procedures for output feedback, constrained compensation, and decentralized control. This semi annual report presents the development of the modified FETM, and through an example, illustrates its applicability to an output feedback and a decentralized control design.

Yousuff, A.↗
NASA NTRS1987

AH-64A shake test and correlation with NASTRAN finite element model predictions

A NASTRAN FEM code for the AH-64A helicopter airframe has been evaluated in light of suspended-fuselage shake tests that determined this aircraft's frequency-response characteristics at numerous measurement locations throughout the structure. Natural frequencies and mode shapes have been estimated from frequency-response data. On the basis of the correlation study results obtained, several modifications were made to the FEM model, yielding significant performance improvements.

Toossi, Mostafa↗
NASA NTRS1991

Photographic Image Restoration

Deblurring capabilities would significantly improve the Flight Science Support Office's ability to monitor the effects of lift-off on the shuttle and landing on the orbiter. A deblurring program was written and implemented to extract information from blurred images containing a straight line or edge and to use that information to deblur the image. The program was successfully applied to an image blurred by improper focussing and two blurred by different amounts of blurring. In all cases, the reconstructed modulation transfer function not only had the same zero contours as the Fourier transform of the blurred image but the associated point spread function also had structure not easily described by simple parameterizations. The difficulties posed by the presence of noise in the blurred image necessitated special consideration. An amplitude modification technique was developed for the zero contours of the modulation transfer function at low to moderate frequencies and a smooth filter was used to suppress high frequency noise.

Hite, Gerald E.↗