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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,783 records · Page 99
All sourcesNASA NTRSDOE OSTI
DOE OSTI2018

Structure of the peptidoglycan polymerase RodA resolved by evolutionary coupling analysis

The shape, elongation, division and sporulation (SEDS) proteins are a large family of ubiquitous and essential transmembrane enzymes with critical roles in bacterial cell wall biology. The exact function of SEDS proteins was for a long time poorly understood, but recent work has revealed that the prototypical SEDS family member RodA is a peptidoglycan polymerase—a role previously attributed exclusively to members of the penicillin-binding protein family4. This discovery has made RodA and other SEDS proteins promising targets for the development of next-generation antibiotics. However, little is known regarding the molecular basis of SEDS activity, and no structural data are available for RodA or any homologue thereof. Here we report the crystal structure of Thermus thermophilus RodA at a resolution of 2.9 Å, determined using evolutionary covariance-based fold prediction to enable molecular replacement. The structure reveals a ten-pass transmembrane fold with large extracellular loops, one of which is partially disordered. Here, the protein contains a highly conserved cavity in the transmembrane domain, reminiscent of ligand-binding sites in transmembrane receptors. Mutagenesis experiments in Bacillus subtilis and Escherichia coli show that perturbation of this cavity abolishes RodA function both in vitro and in vivo, indicating that this cavity is catalytically essential. These results provide a framework for understanding bacterial cell wall synthesis and SEDS protein function.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

SpackDev: Multi-Package Development with Spack

High Energy Physics (HEP) software environments often involve ~ hundreds of external packages and libraries, and similar numbers of experiment-specific, science-critical packages—many under continuous development. Managing coherent releases of the external software stack is challenging enough, but managing the highly-collaborative—and distributed—development of a large body of code against such a stack adds even more complexity and room for error. Spack is a popular Python-based package management tool with a specific focus on the needs of High Performance Computing (HPC) systems and system administrators whose strength is orchestrating the discrete download, build, testing, and installation of pre-packaged or tagged third-party software against similarly stable dependencies. As such it is becoming increasingly popular within HEP as that community makes increasing use of HPC facilities, and as efforts to develop future HPC systems utilize Spack to provide scientific software on those platforms. SpackDev is a system to facilitate the simultaneous development of interconnected sets of packages. Intended to handle packages without restriction to one internal build system, SpackDev is integrated with Spack as a command extension in order to leverage features such as dependency calculations and build system configuration, and is generally applicable outside HEP. We describe SpackDev’s features and development over the last two years, initial experience using SpackDev in the context of the LArSoft liquid argon detector toolkit, and work remaining before it can be considered a fully-functional multi-package build system for HEP experiments utilizing Spack.

Green, Chris↗
NASA NTRS1987

User's guide to programming fault injection and data acquisition in the SIFT environment

Described are the features, command language, and functional design of the SIFT (Software Implemented Fault Tolerance) fault injection and data acquisition interface software. The document is also intended to assist and guide the SIFT user in defining, developing, and executing SIFT fault injection experiments and the subsequent collection and reduction of that fault injection data. It is also intended to be used in conjunction with the SIFT User's Guide (NASA Technical Memorandum 86289) for reference to SIFT system commands, procedures and functions, and overall guidance in SIFT system programming.

Elks, Carl R.↗
NASA NTRS1994

Radiative transfer in shrub savanna sites in Niger: Preliminary results from HAPEX-Sahel. Part 3: Optical dynamics and vegetation index sensitivity to biomass and plant cover

A shrub savannah landscape in Niger was optically characterized utilizing blue, green, red and near-infrared wavelengths. Selected vegetation indices were evaluated for their performance and sensitivity to describe the complex Sahelian soil/vegetation canopies. Bidirectional reflectance factors (BRF) of plants and soils were measured at several view angles, and used as input to various vegetation indices. Both soil and vegetation targets had strong anisotropic reflectance properties, rendering all vegetation index (6) responses to be a direct function of sun and view geometry. Soil background influences were shown to alter the response of most vegetation indices. N-space greenness had the smallest dynamic range in VI response, but the n-space brightness index provided additional useful information. The global environmental monitoring index (GEMI) showed a large 6 dynamic range for bare soils, which was undesirable for a vegetation index. The view angle response of the normalized difference vegetation index (NDVI), atmosphere resistant vegetation index (ARVI) and soil atmosphere resistant vegetation index (SARVI) were asymmetric about nadir for multiple view angles, and were, except for the SARVI, altered seriously by soil moisture and/or soil brightness effects. The soil adjusted vegetation index (SAVI) was least affected by surface soil moisture and was symmetric about nadir for grass vegetation covers. Overall the SAVI, SARVI and the n-space vegetation index performed best under all adverse conditions and were recommended to monitor vegetation growth in the sparsely vegetated Sahelian zone.

vanLeeuwen, W. J. D.↗
DOE OSTI2015

Development of a reverse genetics system to generate a recombinant Ebola virus Makona expressing a green fluorescent protein

Previous studies have demonstrated the potential application of reverse genetics technology in studying a broad range of aspects of viral biology, including gene regulation, protein function, cell entry, and pathogenesis. Here, we describe a highly efficient reverse genetics system used to generate recombinant Ebola virus (EBOV) based on a recent isolate from a human patient infected during the 2014–2015 outbreak in Western Africa. We also rescued a recombinant EBOV expressing a fluorescent reporter protein from a cleaved VP40 protein fusion. Using this virus and an inexpensive method to quantitate the expression of the foreign gene, we demonstrate its potential usefulness as a tool for screening antiviral compounds and measuring neutralizing antibodies. - Highlights: • Recombinant Ebola virus (EBOV) derived from Makona variant was rescued. • New protocol for viral rescue allows 100% efficiency. • Modified EBOV expresses a green fluorescent protein from a VP40-fused protein. • Modified EBOV was tested as tool to screen antiviral compounds and measure neutralizing antibodies.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2016

PSR B0329+54: STATISTICS OF SUBSTRUCTURE DISCOVERED WITHIN THE SCATTERING DISK ON RADIOASTRON BASELINES OF UP TO 235,000 km

We discovered fine-scale structure within the scattering disk of PSR B0329+54 in observations with the RadioAstron ground–space radio interferometer. Here we describe this phenomenon, characterize it with averages and correlation functions, and interpret it as the result of decorrelation of the impulse-response function of interstellar scattering between the widely separated antennas. This instrument included the 10 m Space Radio Telescope, the 110 m Green Bank Telescope, the 14 × 25 m Westerbork Synthesis Radio Telescope, and the 64 m Kalyazin Radio Telescope. The observations were performed at 324 MHz on baselines of up to 235,000 km in 2012 November and 2014 January. In the delay domain, on long baselines the interferometric visibility consists of many discrete spikes within a limited range of delays. On short baselines it consists of a sharp spike surrounded by lower spikes. The average envelope of correlations of the visibility function shows two exponential scales, with characteristic delays of τ{sub 1}=4.1±0.3 μs and τ{sub 2}=23±3 μs, indicating the presence of two scales of scattering in the interstellar medium. These two scales are present in the pulse-broadening function. The longer scale contains 0.38 times the scattered power of the shorter one. We suggest that the longer tail arises from highly scattered paths, possibly from anisotropic scattering or from substructure at large angles.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Investigation of the Cyanothece nitrogenase cluster in Synechocystis : a blueprint for engineering nitrogen-fixing photoautotrophs

ABSTRACT The nitrogenase gene cluster of unicellular diazotrophic cyanobacteria, such asCyanothece, is frequently selected by nature for nitrogen-fixing partnerships with eukaryotic phototrophs. The essential cluster components that confer an advantage in such partnerships remain underexplored. To use this cluster for the development of synthetic, phototrophic nitrogen-fixing systems, a thorough and systematic analysis of its constituent genes is necessary. An initial effort to assess the possibility of engineering this cluster into non-diazotrophic phototrophs led to the generation of aSynechocystis6803 strain with significant nitrogenase activity. In the current study, a refactoring approach was taken to determine the dispensability of the non-structural genes in the cluster and define a minimal gene set for constructing a functional nitrogenase for phototrophs. Using a bottom-up strategy, thenifgenes fromCyanothece51142 were re-organized to form new operons. The genes were then seamlessly removed to determine their essentiality in the nitrogen fixation process. We demonstrate that besides the structural genesnifHDK,nifBSUENPVZTXW, as well ashesAB, are important for optimal nitrogenase function in a phototroph. We also show that optimal expression of these genes is crucial for efficient nitrogenase activity. Our findings provide a solid foundation for generating synthetic systems that will facilitate solar-powered conversion of atmospheric nitrogen into nitrogen-rich compounds, a stride toward a greener world. IMPORTANCE Integrating nitrogen fixation genes into various photosynthetic organisms is an exciting strategy for converting atmospheric nitrogen into nitrogen-rich products in a green and energy-efficient way. In order to facilitate this process, it is essential that we understand the fundamentals of the functioning of a prokaryotic nitrogen-fixing machinery in a non-diazotrophic, photoautotrophic cell. This study examines a nitrogenase gene cluster that has been naturally selected on multiple occasions for a nitrogen-fixing partnership by eukaryotic photoautotrophs and provides a basic blueprint for designing a photosynthetic organism with nitrogen-fixing ability.

Microbiology↗
NASA NTRS1986

Lens collimation and testing using a Twyman-Green interferometer with a self-pumped phase-conjugating mirror

Ordinarily Twyman-Green interferometers are employed testing optical elements. In a modification of the basic configuration, the ordinary mirror in the test arm is replaced with a self-pumped phase-conjugating mirror using a barium titanate crystal. It is shown that, with a redefinition of components, the new configuration permits retention and improvement of the optical element testing function while simultaneously serving as a sensitive test for collimation. The optical path difference resulting from the double pass in the original Twyman-Green interferometer approximately equals that of the single pass and phase conjugation in the modification.

Howes, W. L.↗
DOE OSTI2018

Integrated System of Thermal/Dimensional Analysis for Quality Control of Metallic Melt and Ductile Iron Casting Solidification

The main objective of the present work is to introduce a specific experimental instrument and technique for simultaneously evaluating cooling curves and expansion or contraction of cast metals during solidification. Contraction/expansion analysis illustrates the solidification parameters progression, according to the molten cast iron characteristics, which are dependent on the melting procedure and applied metallurgical treatments, mold media rigidity and thermal behavior [heat transfer parameters]. The first part of the paper summarizes the performance of this two-mold device. Its function is illustrated by representative shrinkage tendency results in ductile cast iron as affected by mold rigidity (green sand and furan resin sand molds) and inoculant type (FeSi-based alloys), published in part previously. The second part of the paper illustrates an application of this equipment adapted for commercial foundry use. It conducts thermal analysis and volume change measurements in a single ceramic cup so that mold media as well as solidification conditions are constants, with cast iron quality as the variable. Experiments compared gray and ductile cast iron solidification patterns. Gray iron castings are characterized by higher undercooling at the beginning and at the end of solidification and lower graphitic expansion. Typically, ductile cast iron exhibits higher graphitic, initial expansion, conducive for shrinkage formation in soft molds.

36 MATERIALS SCIENCE↗
DOE OSTI2021

Urban Forests as Main Regulator of the Evaporative Cooling Effect in Cities

Abstract Higher temperatures in urban areas expose a large fraction of the human population to potentially dangerous heat stress. Green spaces are promoted worldwide as local and city‐scale cooling strategies but the amount, type, and functioning of vegetation in cities lack quantification and their interaction with urban climate in different settings remains a matter of debate. Here we use state‐of‐the‐art remote sensing data from 145 city clusters to disentangle the drivers of surface urban heat islands (SUHI) intensity and quantify urban‐rural differences in vegetation cover, species composition, and evaporative cooling. We show that nighttime SUHIs are affected mostly by abiotic factors, while daytime SUHIs are highly correlated with vegetation characteristics and the wetness of the background climate. Magnitude and seasonality of daytime SUHIs are controlled by urban‐rural differences in plant transpiration and leaf area, which explain the dependence of SUHIs on wetness conditions. Leaf area differences are caused primarily by changes in vegetation type and a loss of in‐city forested areas, highlighting the importance of maintaining “natural reserves” as a sustainable heat mitigation policy.

Paschalis, Athanasios↗
DOE OSTI2024

Thermal stability and coalescence dynamics of exsolved metal nanoparticles at charged perovskite surfaces

Exsolution reactions enable the synthesis of oxide-supported metal nanoparticles, which are desirable as catalysts in green energy conversion technologies. It is crucial to precisely tailor the nanoparticle characteristics to optimize the catalysts’ functionality, and to maintain the catalytic performance under operation conditions. We use chemical (co)-doping to modify the defect chemistry of exsolution-active perovskite oxides and examine its influence on the mass transfer kinetics of Ni dopants towards the oxide surface and on the subsequent coalescence behavior of the exsolved nanoparticles during a continuous thermal reduction treatment. Nanoparticles that exsolve at the surface of the acceptor-type fast-oxygen-ion-conductor SrTi 0.95 Ni 0.05 O 3–δ (STNi) show a high surface mobility leading to a very low thermal stability compared to nanoparticles that exsolve at the surface of donor-type SrTi 0.9 Nb 0.05 Ni 0.05 O 3–δ (STNNi). Our analysis indicates that the low thermal stability of exsolved nanoparticles at the acceptor-doped perovskite surface is linked to a high oxygen vacancy concentration at the nanoparticle-oxide interface. For catalysts that require fast oxygen exchange kinetics, exsolution synthesis routes in dry hydrogen conditions may hence lead to accelerated degradation, while humid reaction conditions may mitigate this failure mechanism.

25 ENERGY STORAGE↗
DOE OSTI2022

Viscosity in water from first-principles and deep-neural-network simulations

Abstract We report on an extensive study of the viscosity of liquid water at near-ambient conditions, performed within the Green-Kubo theory of linear response and equilibrium ab initio molecular dynamics (AIMD), based on density-functional theory (DFT). In order to cope with the long simulation times necessary to achieve an acceptable statistical accuracy, our ab initio approach is enhanced with deep-neural-network potentials (NNP). This approach is first validated against AIMD results, obtained by using the Perdew–Burke–Ernzerhof (PBE) exchange-correlation functional and paying careful attention to crucial, yet often overlooked, aspects of the statistical data analysis. Then, we train a second NNP to a dataset generated from the Strongly Constrained and Appropriately Normed (SCAN) functional. Once the error resulting from the imperfect prediction of the melting line is offset by referring the simulated temperature to the theoretical melting one, our SCAN predictions of the shear viscosity of water are in very good agreement with experiments.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2017

Al x In 1-x P LEDs with II-VI Cladding Layers for Efficient Red and Amber Emission. Final Scientific & Technical Report

Realizing solid state lighting systems with high efficiency and enhanced functionality will require the adoption of color-mixing (cm-LEDs) architectures combining highly efficient red, green, blue and amber light emitting diodes. Already, the hybrid architectures (hy-LEDs) pair phosphor-converted wide bandgap nitride LEDs with (Al x Ga 1-x ) 0.51 In 0.49 P red LEDs to improve the emission spectrum and reduce losses in the infrared. However, the efficiencies of (Al x Ga 1-x ) 0.51 In 0.49 P red and amber LEDs are still too low to truly enable these approaches. The DOE Solid-State Lighting R&D Plan highlights red and amber LED improvement as a long-term research goal. Excessive electron leakage out of the cladding layers, in particular, leads to strong thermal droop and red LED efficiencies of ~25% at normal operating temperatures. The typical device architecture for red and amber LEDs is based on indirect bandgap (Al y Ga 1-y ) 0.51 In 0.49 P cladding layers used to confine injected electrons and holes within a lower, direct bandgap (Al x Ga 1-x ) 0.51 In 0.49 P light-emitting active layer (x < y). The challenge with this approach is that the electron confinement is limited and decreases as the emission wavelength is shortened. Hence, thermal droop and overall device efficiency are very poor for amber LEDs. Innovative solutions to this problem must be sought through the use of new semiconductor materials and structures that will increase electron confinement. We plan to develop Al x In 1-x P LEDs with a II-VI semiconductor electron cladding layer to greatly increase the carrier confinement. Such an approach has the potential to improve red and amber LED efficiency, temperature stability, and light extraction. Al x In 1-x P active layers provide high direct bandgap energies needed to reach amber wavelengths without detrimental internal losses. ZnSe-based alloys are attractive candidates for the electron cladding layer because they can be engineered to provide high conduction band energies relative to the Al x In 1-x P active layer while maintaining roughly the same lattice constant. The lower index of refraction of the II-VI cladding layer will also aid light extraction. While extended defects have largely precluded the use of II-VI semiconductors as the light emitting layer in LEDs and lasers, the effects of these defects on device performance can be mitigated by limiting the use of II-VI materials to the thin, heavily doped cladding layer. Proposed research will focus on optimizing the quality of the Al x In 1-x P active layer and the heteropolar growth of the III-V/II-VI interface, tuning the II-VI cladding layer composition, and device design to maximize electron confinement and LED efficiency. Significant improvement in the performance of red and amber LEDs through this new approach is expected to advance the capabilities of next generation solid-state lighting technologies.

36 MATERIALS SCIENCE↗
NASA NTRS1986

The effect of leaf size on the microwave backscattering by corn

Attema and Ulaby (1978) proposed the cloud model to predict the microwave backscattering properties of vegetation. This paper describes a modification in which the biophysical properties and microwave properties of vegetation are related at the level of the individual scatterer (e.g., the leaf or the stalk) rather than at the level of the aggregated canopy (e.g., the green leaf area index). Assuming that the extinction cross section of an average leaf was proportional to its water content, that a power law relationship existed between the backscattering cross section of an average green corn leaf and its area, and that the backscattering coefficient of the surface was a linear function of its volumetric soil moisture content, it is found that the explicit inclusion of the effects of corn leaf size in the model led to an excellent fit between the observed and predicted backscattering coefficients. Also, an excellent power law relationship existed between the backscattering cross section of a corn leaf and its area.

Paris, J. F.↗
NASA NTRS1995

Impact of differences in the solar irradiance spectrum on surface reflectance retrieval with different radiative transfer codes

Surface reflectance retrieval from imaging spectrometer data as acquired with the Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) has become important for quantitative analysis. In order to calculate surface reflectance from remotely measured radiance, radiative transfer codes such as 5S and MODTRAN2 play an increasing role for removal of scattering and absorption effects of the atmosphere. Accurate knowledge of the exo-atmospheric solar irradiance (E(sub 0)) spectrum at the spectral resolution of the sensor is important for this purpose. The present study investigates the impact of differences in the solar irradiance function, as implemented in a modified version of 5S (M5S), 6S, and MODTRAN2, and as proposed by Green and Gao, on the surface reflectance retrieved from AVIRIS data. Reflectance measured in situ is used as a basis of comparison.

Staenz, K.↗