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At least 19 records

Mesoscale evaluation of AMPS using AWARE radar observations of a wind and precipitation event over the Ross Island region of Antarctica

Surface, upper-air, and radar observations are used to assess the performance of the Antarctic Mesoscale Prediction System (AMPS) in simulating the mesoscale aspects of a wind and precipitation event over the Ross Island region of Antarctica that spanned January 16–20, 2016. The observations, collected during the Atmospheric Radiation Measurement (ARM) West Antarctic Radiation Experiment (AWARE), provide a unique dataset for evaluating AMPS, especially the radar observations that facilitate a three-dimensional depiction of winds and precipitation. Comparisons of AMPS forecast data with surface meteorology, balloon-sounding, and profiling radar observations at and above sites near McMurdo Station reveal a mixture of similarities and differences. A generally southerly flow is evident at low levels in both the AMPS simulations and observed Doppler radial velocities. AMPS winds are comparable to those observed at the surface and aloft in terms of magnitude, direction, and timing but the strongest simulated southerly flow is displaced eastward relative to the observations. AMPS-simulated reflectivity over the broader Ross Island region is more limited in areal extent and smaller in magnitude than observed by a scanning Doppler radar. Three episodes of surface precipitation are observed near McMurdo Station over the five-day event with peak rates of ~3 mm h -1 and a total accumulation of ~22 mm. However, AMPS produces no surface precipitation at that location over the five-day event due to a low-level dry bias in the forecasts. Herein, the results show the first observationally based three-dimensional understanding of meteorology in the Ross Island region.

AMPS↗

The multifaceted role of c-di-AMP signaling in the regulation of Porphyromonas gingivalis lipopolysaccharide structure and function

This study unveils the intricate functional association between cyclic di-3’,5’-adenylic acid (c-di-AMP) signaling, cellular bioenergetics, and the regulation of lipopolysaccharide (LPS) profile in Porphyromonas gingivalis, a Gram-negative obligate anaerobe considered as a keystone pathogen involved in the pathogenesis of chronic periodontitis. Previous research has identified variations in P. gingivalis LPS profile as a major virulence factor, yet the underlying mechanism of its modulation has remained elusive. We employed a comprehensive methodological approach, combining two mutants exhibiting varying levels of c-di-AMP compared to the wild type, alongside an optimized analytical methodology that combines conventional mass spectrometry techniques with a novel approach known as FLAT n . We demonstrate that c-di-AMP acts as a metabolic nexus, connecting bioenergetic status to nuanced shifts in fatty acid and glycosyl profiles within P. gingivalis LPS. Notably, the predicted regulator gene cdaR, serving as a potent regulator of c-di-AMP synthesis, was found essential for producing N-acetylgalactosamine and an unidentified glycolipid class associated with the LPS profile. The multifaceted roles of c-di-AMP in bacterial physiology are underscored, emphasizing its significance in orchestrating adaptive responses to stimuli. Furthermore, our findings illuminate the significance of LPS variations and c-di-AMP signaling in determining the biological activities and immunostimulatory potential of P. gingivalis LPS, promoting a pathoadaptive strategy. The study expands the understanding of c-di-AMP pathways in Gram-negative species, laying a foundation for future investigations into the mechanisms governing variations in LPS structure at the molecular level and their implications for host-pathogen interactions.

59 BASIC BIOLOGICAL SCIENCES↗

Automated Mobility Platforms (AMPs) for Versatile, Energy Efficient, Facility and District Scale Transport

The Automated Mobility Platforms (AMPs) concept is envisioned as an on-demand network of automated lightweight electric vehicles serving mobility needs in a large facility or district-scale setting. Supplanting the function of legacy automated people mover systems, AMPs is scalable to meet the needs of moving people in large interior spaces with destinations that are too distant for walking and in which larger motor vehicles would be unfeasible or undesirable. The AMPs system is designed for automated management and operation, extending to how and where the vehicles are sent to serve mobility needs, as organized through a supervisory management system. AMPs vehicles are requested by users via smartphone app or buttons located on interactive infrastructure elements. AMPs vehicles function similarly to elevators, though in the horizontal plane, wherein users summon vehicles, and are moved point-to-point, with user requested destinations set through intuitive interfaces. The concept targets extensibility, manageability, and performance improvements over legacy technologies, with accessibility and safety features integrally designed into the system.

ADA supportive modes↗

Neutralization profiles of HIV-1 viruses from the VRC01 Antibody Mediated Prevention (AMP) trials

The VRC01 Antibody Mediated Prevention (AMP) efficacy trials conducted between 2016 and 2020 showed for the first time that passively administered broadly neutralizing antibodies (bnAbs) could prevent HIV-1 acquisition against bnAb-sensitive viruses. HIV-1 viruses isolated from AMP participants who acquired infection during the study in the sub-Saharan African (HVTN 703/HPTN 081) and the Americas/European (HVTN 704/HPTN 085) trials represent a panel of currently circulating strains of HIV-1 and offer a unique opportunity to investigate the sensitivity of the virus to broadly neutralizing antibodies (bnAbs) being considered for clinical development. Pseudoviruses were constructed using envelope sequences from 218 individuals. The majority of viruses identified were clade B and C; with clades A, D, F and G and recombinants AC and BF detected at lower frequencies. We tested eight bnAbs in clinical development (VRC01, VRC07-523LS, 3BNC117, CAP256.25, PGDM1400, PGT121, 10–1074 and 10E8v4) for neutralization against all AMP placebo viruses (n = 76). Compared to older clade C viruses (1998–2010), the HVTN703/HPTN081 clade C viruses showed increased resistance to VRC07-523LS and CAP256.25. At a concentration of 1μg/ml (IC80), predictive modeling identified the triple combination of V3/V2-glycan/CD4bs-targeting bnAbs (10-1074/PGDM1400/VRC07-523LS) as the best against clade C viruses and a combination of MPER/V3/CD4bs-targeting bnAbs (10E8v4/10-1074/VRC07-523LS) as the best against clade B viruses, due to low coverage of V2-glycan directed bnAbs against clade B viruses. Overall, the AMP placebo viruses represent a valuable resource for defining the sensitivity of contemporaneous circulating viral strains to bnAbs and highlight the need to update reference panels regularly. Our data also suggests that combining bnAbs in passive immunization trials would improve coverage of global viruses.

60 APPLIED LIFE SCIENCES↗

A Multi-Dimensional Benefit Assessment of Automated Mobility Platforms (AMP) for Large Facilities

Automated Mobility Platform (AMP) is a general term for intelligently managed passenger mobility systems that leverage automation and electrification to improve system performance and sustainability through the integration of real-time data streams with advanced decision-making processes tailored for use in large facilities. Using airports as an example, the rapid growth in air travel demand has led to facility expansions and congested terminals, which directly impacts equity (e.g., increased challenges for passengers with reduced mobility [PRMs]) and sustainability - both of which are important metrics often neglected during the engineering design process. Therefore, to evaluate systems and inform critical decisions more effectively, a holistic evaluation framework is proposed that includes equity, sustainability, and infrastructure perspectives - referred to as a multidimensional benefit assessment. More specifically, the following analysis focuses on: (1) mobility, with emphasis on travel time and accessibility within an airport, contrasting existing systems with the proposed AMP system; (2) equity analysis, specifically to the PRM community, but with an eye to the whole of society; (3) energy consumption and greenhouse gas (GHG) emissions associated with intra-airport mobility, comparing and contrasting modes as well as impacts on overall airport operations efficiency; and (4) fundamental changes in building design enabled by AMPs for larger and more flexible, functional, and energy-efficient structures.

ADVANCED PROPULSION SYSTEMS↗

AMPED EFRC: Alliance for Molecular PhotoElectrode Design for Solar Fuels

Inspired by natural photosynthesis, the mission of the AMPED EFRC was to develop the fundamental molecular basis for solar-driven water oxidation and carbon dioxide reduction catalysis with dye-sensitized photoelectrodes. From 2014-2022, the Center advanced the state-of-the-art in molecule-decorated photoanodes for water oxidation and broke new ground in the development of photocathodes for CO 2 reduction. A collaborative approach brought together experts in inorganic synthesis, organometallic catalysis, interfacial materials synthesis, photoelectrochemistry, and time-resolved dynamics to address by Grand Challenges in the 2007 DOE BESAC report. Since 2009, the UNC EFRC has published 314 peer-reviewed journal articles, and 2 book chapters. More specifically there were 146 peer-reviewed publications,1-146 during the 2014-20 funding cycle, with 80% supported solely by the EFRC, and about half resulting from collaborations among multiple PIs. Three major scientific research areas emerged from AMPED that are described below with details of the most impactful advances for solar energy research.

14 SOLAR ENERGY↗

A Multi-Dimensional Benefit Assessment of Automated Mobility Platforms (AMP) for Large Facilities: Mobility, Energy, Equity, and Facility Management & Design

The goal of the automated mobility platforms (AMPs) initiative is to raise the bar of service regarding equity and sustainability for public mobility systems that are crucial to large facilities, and doing so using electrified, energy efficient technology. Using airports as an example, the rapid growth in air travel demand has led to facility expansions and congested terminals, which directly impacts equity (e.g., increased challenges for Passengers with Reduced Mobility [PRMs]) and sustainability - both of which are important metrics often overlooked during the engineering design process. Therefore, to evaluate systems and inform critical near- and long-term decisions more effectively, a holistic evaluation framework is proposed focused on four key areas: (1) mobility, with emphasis on travel time and accessibility within an airport, (2) environment, focused on energy consumption and greenhouse gas (GHG) emissions associated with intra-airport mobility, (3) equity, specifically to the PRM community, but with an eye to the whole of society, and (4) built environment, or the fundamental changes in building design enabled by different mobility systems for larger and more flexible, functional, and energy-efficient structures. Below, AMPs are defined, and each metric is discussed further, all with a focus on airport mobility.

ADVANCED PROPULSION SYSTEMS↗

First measurements of energetic protons in Mega Amp Spherical Tokamak Upgrade (MAST-U)

First proton production rates from the d(d,p)t reaction in the Mega Amp Spherical Tokamak Upgrade (MAST-U) are measured. The data were taken during the MAST-U experimental campaign with an upgraded version of the proton detector (PD) previously used in MAST. The new detector array consists of three collimated silicon surface barrier detectors with a depletion depth of 300 μm and a collimated 120 μm thick diamond detector, mounted on the MAST-U reciprocating probe arm. This array measures the energies of unconfined energetic 3 MeV protons and 1 MeV tritons mainly produced by beam-thermal DD reactions during neutral beam injection heating. Diamond detectors have the potential to be uniquely suited to detect charged fusion products as they promise to be much more radiation resistant and much less sensitive to temperature variations compared to silicon-based detectors. Using silicon and diamond-based detectors simultaneously allowed us to directly compare the performance of these two detector types. PD particle rates measured during different plasma scenarios are presented and compared to neutron rates measured using the neutron camera upgrade and TRANSP predictions.

Instruments & Instrumentation↗

Linear gyrokinetic simulations of toroidal Alfvén eigenmodes in the Mega-Amp Spherical Tokamak

Linear gyrokinetic (GK) simulations using the Gyrokinetic Toroidal Code (GTC) have been performed to investigate Toroidicity-driven Alfvén Eigenmodes (TAEs) driven by the neutral beam injection (NBI) induced fast ions in the Mega-Amp Spherical Tokamak (MAST) to identify the non-perturbative and kinetic effects of thermal plasma. A specific TAE in MAST discharge 26887, with an on-axis NBI power of approximately 1.5 MW and plasma current around 800 kA, exhibited frequency chirping, and the tangential soft x-ray camera array resolved the radial mode structure peaked near |q|=1.5. Various excitation methods were used in the GTC linear simulations, illustrating this code's capability to realistically represent the mechanisms and behaviors of fast ion-driven TAEs in spherical tokamaks. The radial structures from these GK simulations closely match measurements and calculations performed using the NOVA ideal MHD code, though with the frequencies approximately 10 kHz lower, likely due to various kinetic and non-perturbative effects. The simulations measured the damping rates due to continuum damping, radiative damping, and ion Landau damping, revealing that ion Landau damping has the most significant contribution to the total damping rate of the TAE. A comparison of growth rates of TAEs excited by fast ion Maxwellian and slowing-down distributions shows that the TAEs excited by a fast ion anisotropic pitch distribution (as part of the slowing-down distributions) are more unstable compared to those excited by a Maxwellian distribution with an equivalent fast ion beta. This shows that the use of fast ion anisotropy alters the number of fast ions to be in shear Alfvén resonance, and hence, it can greatly affect the stability of TAEs. These tests can be performed with the GTC but impossible with ideal MHD simulations, highlighting the necessity of kinetic simulations such as the GTC for a precise prediction of the TAE stability.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

MOD-Amp System Design Spring: Spring 2026 – Georgetown University, SYSM–5620

High-energy lasers (HELs) play an important role in both national defense and scientific research. In defense applications, HELs are used for target detection, tracking, and engagement. In research environments, they support studies of extreme physical conditions relevant to fusion energy and plasma science. These systems depend on the amplification of light through stimulated emission of radiation, allowing optical energy to be increased to the levels required for operation. This amplification occurs when light passes through an energized gain medium that receives energy from an external optical or electrical source. To achieve the desired output, laser systems often use multiple amplification stages, including high-gain preamplifiers and lower-gain power or booster amplifiers. At Lawrence Livermore National Laboratory (LLNL) and other national laboratories, many large-aperture laser amplifier systems are aging and rely on system-specific hardware, obsolete technologies, and incomplete documentation. These legacy systems create challenges for maintenance, supportability, and long-term operation. Their lack of standardization also increases the difficulty of sustaining reliable performance over time. As this infrastructure continues to age, the likelihood of unplanned downtime grows, which can negatively affect both national security missions and scientific research programs that depend on dependable HEL capabilities. The purpose of this document is to demonstrate the application of systems engineering fundamentals and design thinking through the development of a laser amplifier case study. The proposed system concept is intended as an academic exercise and not as a finalized engineering design. As a result, the development presented in this document is incomplete and may contain technical assumptions or errors that would require further investigation before any real-world implementation.

42 ENGINEERING↗

Atomic Force Microscopy to Characterize Antimicrobial Peptide-Induced Defects in Model Supported Lipid Bilayers

Antimicrobial peptides (AMPs) interact with bacterial cell membranes through a variety of mechanisms, causing changes extending from nanopore formation to microscale membrane lysis, eventually leading to cell death. Several AMPs also disrupt mammalian cell membranes, despite their significantly different lipid composition and such collateral hemolytic damage hinders the potential therapeutic applicability of the AMP as an anti-microbial. Elucidating the mechanisms underlying the AMP–membrane interactions is challenging due to the variations in the chemical and structural features of the AMPs, the complex compositional variations of cell membranes and the inadequacy of any single experimental technique to comprehensively probe them. (1) Background: Atomic Force Microscopy (AFM) imaging can be used in combination with other techniques to help understand how AMPs alter the orientation and structural organization of the molecules within cell membranes exposed to AMPs. The structure, size, net charge, hydrophobicity and amphipathicity of the AMPs affect how they interact with cell membranes of differing lipid compositions. (2) Methods: Our study examined two different types of AMPs, a 20-amino acid, neutral, α-helical (amphipathic) peptide, alamethicin, and a 13-amino acid, non-α-helical cationic peptide, indolicidin (which intramolecularly folds, creating a hydrophobic core), for their interactions with supported lipid bilayers (SLBs). Robust SLB model membranes on quartz supports, incorporating predominantly anionic lipids representative of bacterial cells, are currently not available and remain to be developed. Therefore, the SLBs of zwitterionic egg phosphatidylcholine (PC), which represents the composition of a mammalian cell membrane, was utilized as the model membrane. This also allows for a comparison with the results obtained from the Quartz Crystal Microbalance with Dissipation (QCM-D) experiments conducted for these peptides interacting with the same zwitterionic SLBs. Further, in the case of alamethicin, because of its neutrality, the lipid charge may be less relevant for understanding its membrane interactions. (3) Results: Using AFM imaging and roughness analysis, we found that alamethicin produced large, unstable defects in the membrane at 5 µM concentrations, and completely removed the bilayer at 10 µM. Indolicidin produced smaller holes in the bilayer at 5 and 10 µM, although they were able to fill in over time. The root-mean-square (RMS) roughness values for the images showed that the surface roughness caused by visible defects peaked after peptide injection and gradually decreased over time. (4) Conclusions: AFM is useful for helping to uncover the dynamic interactions between different AMPs and cell membranes, which can facilitate the selection and design of more efficient AMPs for use in therapeutics and antimicrobial applications.

Swana, Kathleen W.↗

Comparative evaluation of antimicrobial activity of human granulysin, bovine and porcine NK-lysins against Shiga toxin-producing Escherichia coli O157:H7

Shiga toxin-producing Escherichia coli (STEC) O157:H7 (O157) is a foodborne pathogen causing human disease ranging from hemorrhagic colitis and hemolytic uremic syndrome to kidney failure, while remaining harmless to cattle, its primary reservoir. The severity of the human disease associated mainly with Shiga toxin production and a global emergence of antibiotic resistant STEC highlights the need for effective non-antibiotic, pre-harvest strategies to reduce O157 in cattle, the principal source of human infection. Towards this goal three synthetic antimicrobial peptides (AMPs): human granulysin (hGRNL), bovine NK-lysin (bNK2A), and porcine NK-lysin (pNKL), were tested in vitro against O157 isolates. As expected, circular dichroism spectroscopy findings were consistent with a predominantly α-helical conformation for all three AMPs in an environment mimicking bacterial outer surface or liposaccharides. The minimum inhibitory concentrations (MIC) and minimum bactericidal concentrations of hGRNL (200 μM), bNK2A (12.5 μM against strain 86–24 and 25 μM against EDL933), and pNKL (6.25 μM) were determined using the Clinical and Laboratory Standards Institute broth microdilution method in Müeller-Hinton broth (cation-adjusted). The bNK2A and pNKL AMPs did not induce Shiga toxin expression in O157 at MIC, as there was a significant decrease or no change in toxin expression following 4- or 20 h incubation with the AMPs; bNK2A p <0.0001 (4 h) and p = 0.4831 (20 h); pNKL p <0.0001 (4 h) and p = 0.0001 (20 h). Propidium iodide uptake assay revealed faster O157 membrane damage or killing kinetics with bNK2A and pNKL compared to hGRNL. Nonetheless, transmission electron microscopy demonstrated that all three AMPs mediated damage to O157 membranes. In contrast, the three AMPs showed minimal cytotoxicity (<2%) against cattle red blood cells at tested concentrations (0.39–50 μM). Overall, our results demonstrate the potential for bNK2A and pNKL to be further developed into novel non-antibiotic agents to reduce O157 shedding in cattle.

59 BASIC BIOLOGICAL SCIENCES↗

Potent Antiviral Activity against HSV-1 and SARS-CoV-2 by Antimicrobial Peptoids

Viral infections, such as those caused by Herpes Simplex Virus-1 (HSV-1) and SARS-CoV-2, affect millions of people each year. However, there are few antiviral drugs that can effectively treat these infections. The standard approach in the development of antiviral drugs involves the identification of a unique viral target, followed by the design of an agent that addresses that target. Antimicrobial peptides (AMPs) represent a novel source of potential antiviral drugs. AMPs have been shown to inactivate numerous different enveloped viruses through the disruption of their viral envelopes. However, the clinical development of AMPs as antimicrobial therapeutics has been hampered by a number of factors, especially their enzymatically labile structure as peptides. We have examined the antiviral potential of peptoid mimics of AMPs (sequence-specific N-substituted glycine oligomers). These peptoids have the distinct advantage of being insensitive to proteases, and also exhibit increased bioavailability and stability. Our results demonstrate that several peptoids exhibit potent in vitro antiviral activity against both HSV-1 and SARS-CoV-2 when incubated prior to infection. In other words, they have a direct effect on the viral structure, which appears to render the viral particles non-infective. Visualization by cryo-EM shows viral envelope disruption similar to what has been observed with AMP activity against other viruses. Furthermore, we observed no cytotoxicity against primary cultures of oral epithelial cells. These results suggest a common or biomimetic mechanism, possibly due to the differences between the phospholipid head group makeup of viral envelopes and host cell membranes, thus underscoring the potential of this class of molecules as safe and effective broad-spectrum antiviral agents. We discuss how and why differing molecular features between 10 peptoid candidates may affect both antiviral activity and selectivity.

60 APPLIED LIFE SCIENCES↗

Lactoferricins impair the cytosolic membrane of Escherichia coli within a few seconds and accumulate inside the cell

We report the real-time response of Escherichia coli to lactoferricin-derived antimicrobial peptides (AMPs) on length scales bridging microscopic cell sizes to nanoscopic lipid packing using millisecond time-resolved synchrotron small-angle X-ray scattering. Coupling a multiscale scattering data analysis to biophysical assays for peptide partitioning revealed that the AMPs rapidly permeabilize the cytosolic membrane within less than 3 s—much faster than previously considered. Final intracellular AMP concentrations of ~80–100 mM suggest an efficient obstruction of physiologically important processes as the primary cause of bacterial killing. On the other hand, damage of the cell envelope and leakage occurred also at sublethal peptide concentrations, thus emerging as a collateral effect of AMP activity that does not kill the bacteria. This implies that the impairment of the membrane barrier is a necessary but not sufficient condition for microbial killing by lactoferricins. The most efficient AMP studied exceeds others in both speed of permeabilizing membranes and lowest intracellular peptide concentration needed to inhibit bacterial growth.

59 BASIC BIOLOGICAL SCIENCES↗