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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2017

Apex Dips of Experimental Flux Ropes: Helix or Cusp?

We present a new theory for the presence of apex dips in certain experimental flux ropes. Previously such dips were thought to be projections of a helical loop axis generated by the kink instability. However, new evidence from experiments and simulations suggest that the feature is a 2D cusp rather than a 3D helix. The proposed mechanism for cusp formation is a density pileup region generated by nonlinear interaction of neutral gas cones emitted from fast-gas nozzles. The results indicate that density perturbations can result in large distortions of an erupting flux rope, even in the absence of significant pressure or gravitational forces. The density pileup at the apex also suppresses the m = 1 kink mode by acting as a stationary node. Consequently, more accurate density profiles should be considered when attempting to model the stability and shape of solar and astrophysical flux ropes.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

A Germline-Targeting Chimpanzee SIV Envelope Glycoprotein Elicits a New Class of V2-Apex Directed Cross-Neutralizing Antibodies

HIV-1 and its SIV precursors share a broadly neutralizing antibody (bNAb) epitope in variable loop 2 (V2) at the envelope glycoprotein (Env) trimer apex. Here, we tested the immunogenicity of germ line-targeting versions of a chimpanzee SIV (SIVcpz) Env in human V2-apex bNAb heavy-chain precursor-expressing knock-in mice and as chimeric simian-chimpanzee immunodeficiency viruses (SCIVs) in rhesus macaques (RMs). Trimer immunization of knock-in mice induced V2-directed NAbs, indicating activation of V2-apex bNAb precursor-expressing mouse B cells. SCIV infection of RMs elicited high-titer viremia, potent autologous tier 2 neutralizing antibodies, and rapid sequence escape in the canonical V2-apex epitope. Six of seven animals also developed low-titer heterologous plasma breadth that mapped to the V2-apex. Antibody cloning from two of these animals identified multiple expanded lineages with long heavy chain third complementarity determining regions that cross-neutralized as many as 7 of 19 primary HIV-1 strains, but with low potency. Negative stain electron microscopy (NSEM) of members of the two most cross-reactive lineages confirmed V2 targeting but identified an angle of approach distinct from prototypical V2-apex bNAbs, with antibody binding either requiring or inducing an occluded-open trimer. Probing with conformation-sensitive, nonneutralizing antibodies revealed that SCIV-expressed, but not wild-type SIVcpz Envs, as well as a subset of primary HIV-1 Envs, preferentially adopted a more open trimeric state. These results reveal the existence of a cryptic V2 epitope that is exposed in occluded-open SIVcpz and HIV-1 Env trimers and elicits cross-neutralizing responses of limited breadth and potency.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Immunization of cows with HIV envelope trimers generates broadly neutralizing antibodies to the V2-apex from the ultralong CDRH3 repertoire

The generation of broadly neutralizing antibodies (bnAbs) to conserved epitopes on HIV Envelope (Env) is one of the cornerstones of HIV vaccine research. The animal models commonly used for HIV do not reliably produce a potent broadly neutralizing serum antibody response, with the exception of cows. Cows have previously produced a CD4 binding site response by homologous prime and boosting with a native-like Env trimer. In small animal models, other engineered immunogens were shown to focus antibody responses to the bnAb V2-apex region of Env. Here, we immunized two groups of cows (n = 4) with two regimens of V2-apex focusing Env immunogens to investigate whether antibody responses could be generated to the V2-apex on Env. Group 1 was immunized with chimpanzee simian immunodeficiency virus (SIV)-Env trimer that shares its V2-apex with HIV, followed by immunization with C108, a V2-apex focusing immunogen, and finally boosted with a cross-clade native-like trimer cocktail. Group 2 was immunized with HIV C108 Env trimer followed by the same HIV trimer cocktail as Group 1. Longitudinal serum analysis showed that one cow in each group developed serum neutralizing antibody responses to the V2-apex. Eight and 11 bnAbs were isolated from Group 1 and Group 2 cows, respectively, and showed moderate breadth and potency. Potent and broad responses in this study developed much later than previous cow immunizations that elicited CD4bs bnAbs responses and required several different immunogens. All isolated bnAbs were derived from the ultralong CDRH3 repertoire. The finding that cow antibodies can target more than one broadly neutralizing epitope on the HIV surface reveals the generality of elongated structures for the recognition of highly glycosylated proteins. The exclusive isolation of ultralong CDRH3 bnAbs, despite only comprising a small percent of the cow repertoire, suggests these antibodies outcompete the long and short CDRH3 antibodies during the bnAb response.

Microbiology↗
DOE OSTI2017

Neutron Radiation, Radiation Measurement and the JLab APEX Experiment

The A-prime Experiment (APEX), which is approved to run at the Thomas Jefferson Accelerator Facility (JLab) Hall A, will search for a new vector boson that is hypothesized to be a possible force carrier that couples to dark matter. APEX results should be sensitive to the mass range of 65 MeV to 550 MeV, and high sensitivity will be achieved by means of a high intensity 100 muA beam on a 0.3 g/cm 2 Tungsten target resulting in very high luminosity. The experiment should be able to observe an A-prime with a coupling constant 1 x 10 7 times smaller than the electromagnetic coupling constant. To deal safely with such enormous intensity and luminosity, a full radiation analysis must be used. A Geant4 Monte Carlo simulation was performed to study the radiation environments expected in the JLab Hall A during the APEX experiment. We benchmarked our simulations with measurements carried out during past experiments such as the Pb Radius Experiment (PREX-I). Our PREX-I simulations agreed reasonably well with measurements performed by measuring the change in dark current in a Silicon Photomultipliers as a means of radiation damage. However, our simulations were initially significantly higher than the neutron dose measurements (using NP100) in Hall A. The apparent disagreement hints to several potential problems in NP100 measurements including the dead-time. Further, we identified radiation sources in the beam line and tested several shielding strategies to lower the radiation in Hall A. We characterized several thermal neutron detectors and also studied possibility of damage to electronics due to neutron radiation. We successfully demonstrated that the APEX experiment can be carried out in JLab Hall A without worrying about radiation damage to expensive electronics. The A-prime will appear as a narrow resonance in the invariant mass spectrum of e + e - pairs resulting from the electron beam scattering off the APEX target. In this search for the A-prime, it is critical to have a good mass resolution which is mainly dominated by the track measurement uncertainties. We studied a novel method to calibrate the HRS optics which will improve the accuracy of track measurements. Our results will be used to design HRS calibration runs for the APEX experiment.

Kaluarachchi, Maduka↗
DOE OSTI2019

The A' Experiment (APEX): Search for a New Vector Boson A' Decaying to an electron-positron pair

The objective of the research is to search for a particle that mediates a new force that is akin to electromagnetism. This mediator is called a "heavy photon" and denoted by A' . The A' will be searched for with the A' Experiment (APEX) in Experimental Hall A at the Thomas Jefferson National Accelerator Facility (Jefferson Lab) located in Virginia, USA. APEX is a pioneering, technologically proven, highly efficient experiment to search for an A' in the mass range 65 to 525 MeV, with a factor of 10 to 30 improvement in sensitivity over previous A' searches. APEX's science goal --- to search for new forces beyond the known strong, weak, and electromagnetic forces --- is an important component of the mission of the High Energy Physics program in the Department of Energy's Office of Science. APEX uses an intense beam of electrons to look for rare events --- the production and decay of an A' --- and is thus part of the science program of the Intensity Frontier. A discovery by APEX would be of immense scientific interest and fundamentally change our basic understanding of the matter and forces present in our Universe.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2022

Single-nuclei transcriptome analysis of the shoot apex vascular system differentiation in Populus

ABSTRACT Differentiation of stem cells in the plant apex gives rise to aerial tissues and organs. Presently, we lack a lineage map of the shoot apex cells in woody perennials – a crucial gap considering their role in determining primary and secondary growth. Here, we used single-nuclei RNA-sequencing to determine cell type-specific transcriptomes of the Populus vegetative shoot apex. We identified highly heterogeneous cell populations clustered into seven broad groups represented by 18 transcriptionally distinct cell clusters. Next, we established the developmental trajectories of the epidermis, leaf mesophyll and vascular tissue. Motivated by the high similarities between Populus and Arabidopsis cell population in the vegetative apex, we applied a pipeline for interspecific single-cell gene expression data integration. We contrasted the developmental trajectories of primary phloem and xylem formation in both species, establishing the first comparison of vascular development between a model annual herbaceous and a woody perennial plant species. Our results offer a valuable resource for investigating the principles underlying cell division and differentiation conserved between herbaceous and perennial species while also allowing us to examine species-specific differences at single-cell resolution.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

A Comprehensive Analysis of NGC 2158 in the Gaia Era: Photometric Parameters, Apex, and Orbit

We present an investigation of NGC 2158 using Gaia DR2 data. We identified 800 most likely cluster members with membership probability higher than 90%. The mean proper motions of this object are determined as (μ {sub x} = −0.203 ± 0.003, μ {sub y} = −1.99 ± 0.004) mas yr{sup −1}. The limiting radius, log(age), and distance of the cluster are obtained as 23.5 arcmin, 9.38 ± 0.04 Gyr, and 4.69 ± 0.22 kpc, respectively. The overall mass function slope (0.93 ± 0.14) is flatter than the Salpeter value (1.35) within the mass range of 1.17–1.44 M {sub ⊙}. This cluster also shows the mass-segregation effect and our study demonstrates that NGC 2158 is a dynamically relaxed open cluster. Using the apex diagram (AD), the apex coordinates of the cluster are obtained in different ways and are examined using the (μ {sub U},μ {sub T}) diagram. The best value of the apex coordinates is determined as A = 8724 ± 160, D = −3661 ± 530. We also determined the orbit of the cluster and found that NGC 2158 moves almost in the solar antapex direction. The resulting spatial velocity of NGC 2158 is 51 km s{sup −1}. A significant oscillation along the Z-coordinate up to 529 pc is detected. Various scenarios regarding the origin of this cluster are also discussed.

42 ENGINEERING↗
DOE OSTI2021

Mesoscale Frank–Kasper Crystal Structures from Dendron Assembly by Controlling Core Apex Interactions

Single-component polymeric materials open up a great potential for self-assembly into mesoscale complex crystal structures that are known as Frank-Kasper (FK) phases. Predicting the packing structures of the soft-matter spheres, however, remains a challenge even when the molecular design is precisely known. Here, we investigate the role of the molecules' enthalpic interaction in determining the low-symmetry crystal structures. To this end, we synthesize architecturally asymmetric dendrons by varying their apex functionalities and examine the packing structures of the second-generation (G2) dendritic wedges. Our work shows that weakening the hydrogen bonding of the dendron apex makes the particles softer and smaller, and leads to the formation of various FK structures at lower temperatures, including the new observation of a FK C14 phase in the cone-shaped dendron systems. As a consequence of the free energy balance between the particle's interfacial tension and the chain's stretching, various packing structures are mainly tuned by designing the hydrogen bonding interaction.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2022

Apex hydrogen bonds in dendron assemblies modulate close-packed mesocrystal structures

The close-packed mesocrystal structures from soft-matter assemblies have recently received attention due to their structural similarity to atomic crystals, displaying various sphere-packing Frank–Kasper (FK) and quasicrystal structures. Herein, diverse mesocrystal structures are explored in second-generation dendrons (G2-X) designed with identical wedges, in which the terminal functionalities X = CONH 2 and CH 2 NH 2 represent two levels of the strong and weak hydrogen-bonding apexes, respectively. The cohesive interactions at the core apex, referred to as the core interactions, are effectively modulated by forming heterogeneous hydrogen bonds between these two functional units. For the dendron assemblies compositionally close to each pure component of G2-CONH 2 and G2-CH 2 NH 2 , their own FK A15 and C14 phases dominate other phases, respectively. We show the existence of the wide-range FK σ including the dodecagonal quasicrystal (DDQC) phases from the dendron mixtures between G2-CONH 2 and G2-CH 2 NH 2 , providing an experimental phase sequence of A15–σ–DDQC–C14 as the core interactions are alleviated. Intriguingly, the temperature dependence of particle sizes shows that the high plateau values of particle sizes are maintained equivalently until each threshold temperature (T th ), followed by a prompt decrease above the T th . A decrease in T th by alleviating the core interactions and its composition dependence suggest that the more size-dispersed particles, the more susceptibility to chain exchange with increasing temperature. Here our results on the formation of supramolecular dendron assemblies provide a guide to understand the core-interaction-dependent mesocrystal structures toward the fundamental principle underlying the temperature dependence of their particle sizes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2025

What's on the menu? Examining native apex‐ and invasive meso‐predator diets to understand impacts on ecosystems

Abstract Understanding how carnivores impact ecological communities is essential for guiding effective management actions and conserving biodiversity. Quantifying predators' diets, including prey selectivity, allows for the assessment of the relative effects native and invasive predators may have on prey populations. In Australia, populations of a native, terrestrial apex predator, the dingo Canis dingo/C. familiaris , and introduced and invasive subordinate mesopredators, the European red fox Vulpes vulpes and feral cat Felis catus , co‐occur, but there is limited understanding of their relative impacts on native and invasive prey in different ecosystems. To assess the possible effects of dingoes, foxes and cats on prey, we examined their diet and prey selectivity across a ~10,000 km 2 semi‐arid mallee ecosystem. Using macroscopic scat analysis, we identified strong dietary niche separation. Larger‐bodied dingoes primarily consumed large marsupial herbivores, whereas foxes and cats primarily consumed smaller prey, including introduced and native rodents and birds. Foxes had the broadest diet, and the greatest dietary overlap with cats ( = 0.81), compared with dingoes ( = 0.50) or between dingoes and cats ( = 0.36). Livestock were identified in 2% of dingo and 7% of fox scats. Cats and foxes consumed more than 15 times the volume of small native mammals compared with dingoes, including threatened species such as fat‐tailed dunnarts Sminthopsis crassicaudata . Cats and foxes also selectively consumed small mammals relative to their estimated availability and consumed fewer large mammals. In contrast, dingoes consumed fewer birds and more echidnas relative to their availability. Our results suggest limited intraguild competition within this semi‐arid ecosystem, as dingoes are primarily exerting top‐down pressure on large herbivores, whereas invasive mesopredators are disproportionately impacting smaller prey, including threatened native mammals. Practical implication . Our findings suggest that ongoing conservation management of dingoes, red foxes and feral cats must consider the variation in diets, impacts on prey and ecological roles of these different predator species, and avoid indiscriminate lethal control methods. Quantifying actual, rather than assumed, impacts of predators on threatened native species, large herbivores and livestock is essential to achieve effective and integrated ecosystem management.

Mason, Rachel T. [School of Life and Environmental↗
DOE OSTI2017

A performance study of the time-varying cache behavior: a study on APEX, Mantevo, NAS, and PARSEC

Cache has long been used to minimize the latency of main memory accesses by storing frequently used data near the processor. Processor performance depends on the underlying cache performance. Therefore, significant research has been done to identify the most crucial metrics of cache performance. Although the majority of research focuses on measuring cache hit rates and data movement as the primary cache performance metrics, cache utilization is significantly important. We investigate the application’s locality using cache utilization metrics. In addition, we present cache utilization and traditional cache performance metrics as the program progresses providing detailed insights into the dynamic application behavior on parallel applications from four benchmark suites running on multiple cores. We explore cache utilization for APEX, Mantevo, NAS, and PARSEC, mostly scientific benchmark suites. Our results indicate that 40% of the data bytes in a cache line are accessed at least once before line eviction. Also, on average a byte is accessed two times before the cache line is evicted for these applications. Moreover, we present runtime cache utilization, as well as, conventional performance metrics that illustrate a holistic understanding of cache behavior. To facilitate this research, we build a memory simulator incorporated into the Structural Simulation Toolkit (Rodrigues et al. in SIGMETRICS Perform Eval Rev 38(4):37–42, 2011). Finally, our results suggest that variable cache line size can result in better performance and can also conserve power.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2018

The Utility of Penile Bulb Contouring to Localise the Prostate Apex as Compared to Urethrography

High-precision radiotherapy relies on accurate anatomic localisation. Urethrography is often used to localise the prostatic apex. However, urethrography is an invasive localisation procedure and may introduce a systemic error. The penile bulb (PB) is contoured to minimise the risk of erectile dysfunction. The purpose of this study is to assess the value of using the PB, as an alternative to urethrography, to localise the prostate.

62 RADIOLOGY AND NUCLEAR MEDICINE↗
DOE OSTI2024

Diocotron modes in pure electron plasmas in the APEX levitating dipole trap

Abstract Observations of persistent toroidal modes in dipole-trapped pure electron plasmas are presented. Non-neutral electron plasmas were confined by the poloidal magnetic field of the APEX (A Positron Electron eXperiment) levitating dipole trap. The negative bias of the electron emitter was gated to control the filling time. Large amplitude, narrow-band oscillations were consistently observed in wall probe measurements after the fill. The oscillatory image-charge currents induced by the trapped electron plasma typically persisted for many seconds with fundamental frequencies, f 0 = 50 to 500 kHz, that scale with the E → × B → drift velocity. We attribute this feature to the dipole-equivalent of the diocotron mode that is commonly observed in non-neutral plasmas in linear traps.

Deller, A. (ORCID:0000000234301501)↗
DOE OSTI2018

The Variable Saturation Hydraulic Conductivity Method for Improving Soil Water Content Simulation in EPIC and APEX Models

Core Ideas We propose VSHC for calculating soil water percolation in continuous models. VSHC relates permeability to daily hydraulic properties to estimate hydraulic conductivity. VSHC performed well at field scale and improved estimates of peak streamflows. Soil water percolation is a key process in the life cycle of water in fields, watersheds, and river basins. The Environmental Policy Integrated Climate (EPIC) and the Agricultural Policy/Environmental eXtender (APEX) are continuous models developed for evaluating the environmental effects of agricultural management. Traditionally, these models have simulated soil water percolation processes using a tipping‐bucket approach, with the rate of flow limited by the saturated hydraulic conductivity. This simple approach often leads to inaccuracy in simulating elevated soil water conditions where soil water content (SWC) levels may remain above field capacity under prolonged wet weather periods or limited drainage. To overcome this deficiency, a new submodel, the variable saturation hydraulic conductivity (VSHC) method, was developed for simulating soil water percolation processes using a nonlinear equation to estimate the effective hydraulic conductivity as a function of the SWC and soil properties. The VSHC method was evaluated at three sites in the United States and two sites in Europe. In addition, a numerical solution of the Richards equation was used as a benchmark for SWC comparison. Results show that the VSHC method substantially improves the accuracy of the SWC simulation in long‐term simulations, particularly during wet periods. At the watershed scale, results on the Riesel Y2 watershed indicate that the VSHC method enhances model performance in the high‐flow regime of channel peak flows because of the improved estimation of SWC, which implies that the improved SWC simulation at the field scale is beneficial to hydrologic modeling at the watershed scale.

Doro, Luca↗
DOE OSTI2019

Technical Equivalency Evaluation of Lynx Electronics and Apex-InVivo software for the LLNL Whole Body Scanning Bed System

Lawrence Livermore National Laboratory (LLNL) Whole Body Counter (WBC) is replacing the following components for its scanning bed counting system: NIM electronics with modern Lynx electronics, The Alpha Workstation running VMS with a PC running Windows , and Abacos-Plus in-vivo counting software with the new Apex-InVivo software. These new components provide a compact design, extend the lifecycle of the system as a whole, reduce maintenance and user time, an improve overall ease of use. The technical evaluations and results described in this document demonstrate that the total system, incorporating these new components, provides results that comply with Internal Dosimetry requirements.

61 RADIATION PROTECTION AND DOSIMETRY↗
DOE OSTI2021

Evaluation of Apex Alpha with LabWare-LIMS Data Reduction for Alpha Analyses

Savannah River Site's Environmental Bioassay Laboratory is migrating its laboratory information management system (LIMS) from SQL-LIMS to Oracle Labware-LIMS (LW-LIMS) systems to align with the Department of Energy's cyber security policies. Concurrently with the LIMS upgrade, the current VMS based Alpha Measurement System (AMS) software is being replaced with Apex Alpha software to reduce other cyber vulnerabilities, streamline procedural production aspects of data handling, and improve outdated reduction processes to align the program with requirements outlined in ANSI N13.30. The primary technical changes which are being implemented are: - Reagent contributions are added in data reduction, - Moving average background equivalent activity are used for gross signal corrections, - Measured uncertainty of both are included in the decision level and propagated uncertainty, - Tracer levels are increased for precision and accuracy improvements, and - Reports are modified for compliance.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗