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At least 19 records

AMiBA: cluster Sunyaev-Zel'dovich effect observations with the expanded 13-element array

The Yuan-Tseh Lee Array for Microwave Background Anisotropy (AMiBA) is a co-planar interferometer array operating at a wavelength of 3 mm to measure the Sunyaev–Zel’dovich effect (SZE) of galaxy clusters at arcminute scales. The first phase of operation—with a compact 7-element array with 0.6 m antennas (AMiBA-7)—observed six clusters at angular scales from 5{sup ′} to 23{sup ′}. Here, we describe the expansion of AMiBA to a 13-element array with 1.2 m antennas (AMiBA-13), its subsequent commissioning, and cluster SZE observing program. The most noticeable changes compared to AMiBA-7 are (1) array re-configuration with baselines ranging from 1.4 m to 4.8 m, allowing us to sample structures between 2{sup ′} and 10{sup ′}, (2) 13 new lightweight carbon-fiber-reinforced plastic (CFRP) 1.2 m reflectors, and (3) additional correlators and six new receivers. Since the reflectors are co-mounted on and distributed over the entire six-meter CFRP platform, a refined hexapod pointing error model and phase error correction scheme have been developed for AMiBA-13. These effects—entirely negligible for the earlier central close-packed AMiBA-7 configuration—can lead to additional geometrical delays during observations. Our correction scheme recovers at least 80 ± 5% of the point-source fluxes. We, therefore, apply an upward correcting factor of 1.25 to our visibilities to correct for phase decoherence, and a ±5% systematic uncertainty is added in quadrature with our statistical errors. We demonstrate the absence of further systematics with a noise level consistent with zero in stacked uv-visibilities. From the AMiBA-13 SZE observing program, we present here maps of a subset of 12 clusters with signal-to-noise ratios above five. We demonstrate combining AMiBA-7 with AMiBA-13 observations on Abell 1689, by jointly fitting their data to a generalized Navarro–Frenk–White model. Our cylindrically integrated Compton-y values for five radii are consistent with results from the Berkeley-Illinois-Maryland Array, the Owens Valley Radio Observatory, the Sunyaev–Zel’dovich Array, and the Planck Observatory. We also report the first targeted SZE detection toward the optically selected cluster RCS J1447+0828, and we demonstrate the ability of AMiBA SZE data to serve as a proxy for the total cluster mass. Finally, we show that our AMiBA-SZE derived cluster masses are consistent with recent lensing mass measurements in the literature.

79 ASTRONOMY AND ASTROPHYSICS↗

Modular assembly of transposable element arrays by microsatellite targeting in the guayule and rice genomes

Background: Guayule ( Parthenium argentatum A. Gray) is a rubber-producing desert shrub native to Mexico and the United States. Guayule represents an alternative to Hevea brasiliensis as a source for commercial natural rubber. The efficient application of modern molecular/genetic tools to guayule improvement requires characterization of its genome. Results: The 1.6 Gb guayule genome was sequenced, assembled and annotated. The final 1.5 Gb assembly, while fragmented (N50 = 22 kb), maps > 95% of the shotgun reads and is essentially complete. Approximately 40,000 transcribed, protein encoding genes were annotated on the assembly. Further characterization of this genome revealed 15 families of small, microsatellite-associated, transposable elements (TEs) with unexpected chromosomal distribution profiles. These SaTar (Satellite Targeted) elements, which are non-autonomous Mu-like elements (MULEs), were frequently observed in multimeric linear arrays of unrelated individual elements within which no individual element is interrupted by another. This uniformly non-nested TE multimer architecture has not been previously described in either eukaryotic or prokaryotic genomes. Five families of similarly distributed non-autonomous MULEs (microsatellite associated, modularly assembled) were characterized in the rice genome. Families of TEs with similar structures and distribution profiles were identified in sorghum and citrus. Conclusion: The sequencing and assembly of the guayule genome provides a foundation for application of current crop improvement technologies to this plant. In addition, characterization of this genome revealed SaTar elements with distribution profiles unique among TEs. Satar targeting appears based on an alternative MULE recombination mechanism with the potential to impact gene evolution.

59 BASIC BIOLOGICAL SCIENCES↗

Evaluation of a generalized least squares algorithm for infrasound beamforming with coherent background noise

Infrasonic signals of interest can occur during periods with persistent, coherent, background noise, which may be natural or anthropogenic. For high signal-to-noise (SNR) ratio transient signals, an ‘overprinting’ of the coherent background may occur, and the signal may still be detected. However, this approach fails for low SNR signals of interest, which may be obscured by coherent noise. An infrasound beamforming method based on generalized least squares (GLS) is investigated for detecting transient signals of interest in the presence of coherent and incoherent background noise. This approach relies on an estimate of the noise covariance, captured in a covariance matrix, to effectively null contributions to the array response from noisy directions of arrival. Synthetic array data is used to investigate the performance of the GLS beamformer compared to the Bartlett beamformer when coherent and incoherent backgrounds are present. Additionally, the effects of array element number and relative strength of the interfering signal on the GLS estimates is investigated. GLS empirical area under the curve estimates suggest that the beamformer can recover coherent power for a signal of interest lower in amplitude than the coherent background, but this effectiveness degrades more quickly with SNR for a four element array compared to a six or eight element infrasound array. Finally, infrasound from the Forensic Surface Experiment, a bolide signal observed at IMS array I37NO, and a volcanic signal recorded at the Alaska Volcano Observatory array ADKI are used to evaluate GLS performance on recorded data. A ten minute window was used to capture the background noise, and the coherent background signal was nulled in all three examples.

58 GEOSCIENCES↗

Enhanced focus steering abilities of multi-element therapeutic arrays operating in nonlinear regimes

Steering abilities of a typical HIFU therapeutic array operated in linear and nonlinear regimes were compared using numerical simulation with the 3D Westervelt equation. The array included 256 elements of 1.2 MHz frequency and 6.6 mm diameter distributed in a quasi-random pattern over a spherical shell with a 130 mm aperture and a focal length of 120 mm. In the case of linear focusing, thermal effects are proportional to the intensity level and the criterion for safe array operation is that the intensity in the grating lobes should be less than 10% of the intensity in the main focus. In the case of nonlinear focusing, the heating effect is no longer proportional to intensity; therefore the heat deposition rate was chosen as the relevant metric, using the same 10% threshold for the secondary lobe in comparison with the focal maximum. When steering the focus, the same linearly predicted intensity level at the main focus was maintained by increasing the array power. Numerical simulations of the acoustic field were performed for nonlinear propagation both in water and in tissue. It was shown that for shock-forming conditions in the main focus, the steering range of safe electronic focusing is larger than that for linear propagation conditions. Nonlinear sonication regimes therefore can be used to enlarge tissue volumes that can be sonicated using electronic steering of the focus of HIFU arrays.

42 ENGINEERING↗

Ultra-wideband mutual coupling compensation of active electronically scanned arrays in multi-channel radar systems

Technologies pertaining to the calibration of ultra-wide-band active-electronically-scanned arrays to compensate for transmit and receive mutual coupling between array elements and/or non-ideal isolated channels are described herein. A plurality of near-field measurements are taken by way of probe or probes that may be moved among a plurality of positions aligned with respective elements in the array. For each position of the probe, each of the elements of the array is stimulated to transmit or receive a calibration signal to or from the probe, respectively. Frequency-domain transfer functions are computed from the received signals by the probe or the element for each of the array elements in each of the positions of the probe. The inverse of the matrix of transfer functions comprise frequency-domain transmit and receive correction factors that are used to modify desired array inputs/outputs such that the modified signals correct for mutual coupling between elements in the array.

42 ENGINEERING↗

LOW-FREQUENCY IMAGING OF FIELDS AT HIGH GALACTIC LATITUDE WITH THE MURCHISON WIDEFIELD ARRAY 32 ELEMENT PROTOTYPE

The Murchison Widefield Array (MWA) is a new low-frequency, wide-field-of-view radio interferometer under development at the Murchison Radio-astronomy Observatory in Western Australia. We have used a 32 element MWA prototype interferometer (MWA-32T) to observe two 50 Degree-Sign diameter fields in the southern sky, covering a total of {approx}2700 deg{sup 2}, in order to evaluate the performance of the MWA-32T, to develop techniques for epoch of reionization experiments, and to make measurements of astronomical foregrounds. We developed a calibration and imaging pipeline for the MWA-32T, and used it to produce {approx}15' angular resolution maps of the two fields in the 110-200 MHz band. We perform a blind source extraction using these confusion-limited images, and detect 655 sources at high significance with an additional 871 lower significance source candidates. We compare these sources with existing low-frequency radio surveys in order to assess the MWA-32T system performance, wide-field analysis algorithms, and catalog quality. Our source catalog is found to agree well with existing low-frequency surveys in these regions of the sky and with statistical distributions of point sources derived from Northern Hemisphere surveys; it represents one of the deepest surveys to date of this sky field in the 110-200 MHz band.

79 ASTRONOMY AND ASTROPHYSICS↗

A 189 MHz, 2400 deg{sup 2} POLARIZATION SURVEY WITH THE MURCHISON WIDEFIELD ARRAY 32-ELEMENT PROTOTYPE

We present a Stokes I, Q and U survey at 189 MHz with the Murchison Widefield Array 32 element prototype covering 2400 deg{sup 2}. The survey has a 15.6 arcmin angular resolution and achieves a noise level of 15 mJy beam{sup -1}. We demonstrate a novel interferometric data analysis that involves calibration of drift scan data, integration through the co-addition of warped snapshot images, and deconvolution of the point-spread function through forward modeling. We present a point source catalog down to a flux limit of 4 Jy. We detect polarization from only one of the sources, PMN J0351-2744, at a level of 1.8% {+-} 0.4%, whereas the remaining sources have a polarization fraction below 2%. Compared to a reported average value of 7% at 1.4 GHz, the polarization fraction of compact sources significantly decreases at low frequencies. We find a wealth of diffuse polarized emission across a large area of the survey with a maximum peak of {approx}13 K, primarily with positive rotation measure values smaller than +10 rad m{sup -2}. The small values observed indicate that the emission is likely to have a local origin (closer than a few hundred parsecs). There is a large sky area at {alpha} {>=} 2{sup h}30{sup m} where the diffuse polarized emission rms is fainter than 1 K. Within this area of low Galactic polarization we characterize the foreground properties in a cold sky patch at ({alpha}, {delta}) = (4{sup h}, -27. Degree-Sign 6) in terms of three-dimensional power spectra.

79 ASTRONOMY AND ASTROPHYSICS↗

Expandable LED array interconnect

A light emitting device that can function as an array element in an expandable array of such devices. The light emitting device comprises a substrate that has a top surface and a plurality of edges. Input and output terminals are mounted to the top surface of the substrate. Both terminals comprise a plurality of contact pads disposed proximate to the edges of the substrate, allowing for easy access to both terminals from multiple edges of the substrate. A lighting element is mounted to the top surface of the substrate. The lighting element is connected between the input and output terminals. The contact pads provide multiple access points to the terminals which allow for greater flexibility in design when the devices are used as array elements in an expandable array.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Regression of exchangeable relational arrays

Relational arrays represent measures of association between pairs of actors, often in varied contexts or over time. Trade flows between countries, financial transactions between individuals, contact frequencies between school children in classrooms and dynamic protein-protein interactions are all examples of relational arrays. Elements of a relational array are often modelled as a linear function of observable covariates. Uncertainty estimates for regression coefficient estimators, and ideally the coefficient estimators themselves, must account for dependence between elements of the array, e.g., relations involving the same actor. Existing estimators of standard errors that recognize such relational dependence rely on estimating extremely complex, heterogeneous structure across actors. This paper develops a new class of parsimonious coefficient and standard error estimators for regressions of relational arrays. Here we leverage an exchangeability assumption to derive standard error estimators that pool information across actors, and are substantially more accurate than existing estimators in a variety of settings. This exchangeability assumption is pervasive in network and array models in the statistics literature, but not previously considered when adjusting for dependence in a regression setting with relational data. We demonstrate improvements in inference theoretically, via a simulation study, and by analysis of a dataset involving international trade.

97 MATHEMATICS AND COMPUTING↗

Scalable and automated CRISPR-based strain engineering using droplet microfluidics

Abstract We present a droplet-based microfluidic system that enables CRISPR-based gene editing and high-throughput screening on a chip. The microfluidic device contains a 10 × 10 element array, and each element contains sets of electrodes for two electric field-actuated operations: electrowetting for merging droplets to mix reagents and electroporation for transformation. This device can perform up to 100 genetic modification reactions in parallel, providing a scalable platform for generating the large number of engineered strains required for the combinatorial optimization of genetic pathways and predictable bioengineering. We demonstrate the system’s capabilities through the CRISPR-based engineering of two test cases: (1) disruption of the function of the enzyme galactokinase ( galK ) in E. coli and (2) targeted engineering of the glutamine synthetase gene ( glnA ) and the blue-pigment synthetase gene ( bpsA ) to improve indigoidine production in E. coli .

42 ENGINEERING↗

The Pointing Self-calibration Algorithm for Aperture Synthesis Radio Telescopes

This paper is concerned with algorithms for calibration of direction-dependent effects (DDE) in aperture synthesis radio telescopes (ASRT). After correction of direction-independent effects (DIE) using self-calibration, imaging performance can be limited by the imprecise knowledge of the forward gain of the elements in the array. In general, the forward gain pattern is directionally dependent and varies with time due to a number of reasons. Some factors, such as rotation of the primary beam with Parallactic Angle for Azimuth–Elevation mount antennas are known a priori. Some, such as antenna pointing errors and structural deformation/projection effects for aperture-array elements cannot be measured a priori. Thus, in addition to algorithms to correct for DD effects known a priori, algorithms to solve for DD gains are required for high dynamic range imaging. Here, we discuss a mathematical framework for antenna-based DDE calibration algorithms and show that this framework leads to computationally efficient optimal algorithms that scale well in a parallel computing environment. As an example of an antenna-based DD calibration algorithm, we demonstrate the Pointing SelfCal (PSC) algorithm to solve for the antenna pointing errors. Our analysis show that the sensitivity of modern ASRT is sufficient to solve for antenna pointing errors and other DD effects. We also discuss the use of the PSC algorithm in real-time calibration systems and extensions for antenna Shape SelfCal algorithm for real-time tracking and corrections for pointing offsets and changes in antenna shape.

79 ASTRONOMY AND ASTROPHYSICS↗

Optical Characterization of the SPT-3G Camera

The third-generation South Pole Telescope camera is designed to measure the cosmic microwave background across three frequency bands (centered at 95, 150 and 220 GHz) with ~ 16,000 transition-edge sensor (TES) bolometers. Each multichroic array element on a detector wafer has a broadband sinuous antenna that couples power to six TESs, one for each of the three observing bands and both polarizations, via lumped element filters. Ten detector wafers populate the detector array, which is coupled to the sky via a large-aperture optical system. Here we present the frequency band characterization with Fourier transform spectroscopy, measurements of optical time constants, beam properties, and optical and polarization efficiencies of the detector array. The detectors have frequency bands consistent with our simulations and have high average optical efficiency which is 86, 77 and 66% for the 95, 150 and 220 GHz detectors. The time constants of the detectors are mostly between 0.5 and 5 ms. The beam is round with the correct size, and the polarization efficiency is more than 90% for most of the bolometers.

79 ASTRONOMY AND ASTROPHYSICS↗

Beam steering via resonance detuning in coherently coupled vertical cavity laser arrays

Coherently coupled vertical-cavity surface-emitting laser arrays offer unique advantages for nonmechanical beam steering applications. We have applied dynamic coupled mode theory to show that the observed temporal phase shift between vertical-cavity surface-emitting array elements is caused by the detuning of their resonant wavelengths. Hence, a complete theoretical connection between the differential current injection into array elements and the beam steering direction has been established. It is found to be a fundamentally unique beam-steering mechanism with distinct advantages in efficiency, compactness, speed, and phase-sensitivity to current.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Wavelength selective filtering with non-radial array of microstructure elements

A non-radial array of microstructure elements provides enhanced wavelength selective filtering. The elements are arranged along a line that does not intersect the center of the core. In this configuration, the first coupling element in an array that is nearest to the core is a non-integer array unit spacing from the main waveguide where the array unit spacing is defined as the flat to flat distance of a hexagonal cell.

Kiani, Leily S.↗

Passive Acoustic Detection of Wind Turbine In-Flow Conditions for Active Control and Optimization

Wind is a significant source of energy; however, the human capability to produce electrical energy still has many hurdles to overcome. One of these is the unpredictability of the winds in the atmospheric boundary layer (ABL). The ABL is highly turbulent in both stable and unstable conditions (based on the vertical temperature profile) and the resulting fluctuations can have a dramatic impact on wind turbine operation. Any method by which these fluctuations could be observed, estimated, or predicted could provide a benefit to the wind energy industry as a whole. Based on the fundamental coupling of velocity fluctuations to pressure fluctuations in the nearly incompressible flow in the ABL, This work hypothesizes that a ground-based array of infrasonic pressure transducers could be employed to estimate the vertical wind profile over a height relevant for wind turbines. To analyze this hypothesis, experiments and field deployments were conducted. Wind tunnel experiments were performed for a thick turbulent boundary layer over a neutral or heated surface. Surface pressure and velocity probe measurements were acquired simultaneously. Two field deployments yielded surface pressure data from a 49 element array. The second deployment at the Reese Technology Center in Lubbock, TX, also included data from a smaller aperture, 96-element array and a 200-meter tall meteorological tower. Analysis of the data successfully demonstrated the ability to estimate the vertical velocity profile using coherence data from the pressure array. Also, dynamical systems analysis methods were successful in identifying and tracking a gust type event. In addition to the passive acoustic profiling method, this program also investigated a rapid response Doppler SODAR system, the optimization of wind turbine blades for enhanced power with reduced aeroacoustic noise production, and the implementation of a wireless health monitoring system for the wind turbine blades. Each of these other objectives was met successfully. The use of phase unwrapping applied to SODAR data was found to yield reasonable results for per-pulse measurements. A health monitoring system design analysis was able to demonstrate the ability to use a very small number of sensors to monitor blade health based on the blade's overall structural modes. Most notable was the development of a multi-objective optimization methodology that successfully yielded an aerodynamic blade design that produces greater power output with reduced aerodynamic loading noise. This optimization method could be significant for future design work.

17 WIND ENERGY↗

Superior spatial resolution in confocal X-ray techniques using collimating channel array optics: elemental mapping and speciation in archaeological human bone

Confocal X-ray fluorescence imaging (CXFI) and confocal X-ray absorption spectroscopy (CXAS) respectively enable the study of three dimensionally resolved localization and speciation of elements. Applied to a thick sample, essentially any volume element of interest within the X-ray fluorescence escape depth can be examined without the need for physical thin sectioning. To date, X-ray confocal detection generally has employed a polycapillary optic in front of the detector to collect fluorescence from the probe volume formed at the intersection of its focus with the incident microfocus beam. This work demonstrates the capability of a novel Collimating Channel Array (CCA) optic in providing an improved and essentially energy independent depth resolution approaching 2 μm. By presenting a comparison of elemental maps of archaeological bone collected without confocal detection, and with polycapillary- and CCA-based confocal detection, this study highlights the strengths and limitations of each mode. Unlike the polycapillary, the CCA shows similar spatial resolution in maps for both low (Ca) and high (Pb and Sr) energy X-ray fluorescence, thus illustrating the energy independent nature of the CCA optic resolution. While superior spatial resolution is demonstrated for all of these elements, the most significant improvement is observed for Ca, demonstrating the advantage of employing the CCA optic in examining light elements. In addition to CXFI, this configuration also enables the collection of Pb L3 CXAS data from micro-volumes with dimensions comparable to bone microstructures of interest. Our CXAS result, which represents the first CCA-based biological CXAS, demonstrates the ability of CCA optics to collect site specific spectroscopic information. The demonstrated combination of site-specific elemental localization and speciation data will be useful in diverse fields.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗